PI0014930 (gene) Melon (PI 482460) v1

Overview


Name	PI0014930
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr04: 17138797 .. 17139459 (-)
RNA-Seq Expression	PI0014930
Synteny	PI0014930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCCTCAAAACCCTTAACAAGGATAAAGGTGCCCTAGAAGAAGAAGAAAGAACATCGCTCATTCCACCCCCTAAGAAGTGCAAAGTTCTTGATGGTGTGTCTGGCTTGCAACCCAAAGAAAAGAAATGGAAGCCAGAAGTGACCATCAATCCAAAGCCATTGGCCATCCTTCCCCCTTTAAAAAGGCCATCCAAATCGCCCAGTCCTCCCCTACCTCCAAAAATCCAAACTCCTTCACCACCTCCACCAATCCAAAATCCACTTCCCAACCTCCAATCTCCCAAATCCAAACTCATCAGGCAAGCTAAGCCCATGTCGGCTATCCTTCTATCGTCACTCCACAATCCACTCACTACATCTATCCTCATCATCATACCACCACCCTCCGTCTCGCGACCTGACCTCAACCAACCCTTGCGTGACCAAAATGGTGTGGTTGGCGAAGAAGAGTTCCTTGACCTTAAAGAAGAACTGTCAGGCAATCCTCCTCCTTCATCGTCTATTATCAACCTTTTCAAAGAGGACGACGTAGTCATTGCGACCACGAGCATTACCAAGTTGCCTCCCCTAGTCAAGTCTAGAACAAGTGTTGATGACCCATTTGTTAGAGGCAAAGTTGTCACCTGTGACACACCAGGTGAGACCAACTCATTTACATGA

mRNA sequence

ATGTGCCTCAAAACCCTTAACAAGGATAAAGGTGCCCTAGAAGAAGAAGAAAGAACATCGCTCATTCCACCCCCTAAGAAGTGCAAAGTTCTTGATGGTGTGTCTGGCTTGCAACCCAAAGAAAAGAAATGGAAGCCAGAAGTGACCATCAATCCAAAGCCATTGGCCATCCTTCCCCCTTTAAAAAGGCCATCCAAATCGCCCAGTCCTCCCCTACCTCCAAAAATCCAAACTCCTTCACCACCTCCACCAATCCAAAATCCACTTCCCAACCTCCAATCTCCCAAATCCAAACTCATCAGGCAAGCTAAGCCCATGTCGGCTATCCTTCTATCGTCACTCCACAATCCACTCACTACATCTATCCTCATCATCATACCACCACCCTCCGTCTCGCGACCTGACCTCAACCAACCCTTGCGTGACCAAAATGGTGTGGTTGGCGAAGAAGAGTTCCTTGACCTTAAAGAAGAACTGTCAGGCAATCCTCCTCCTTCATCGTCTATTATCAACCTTTTCAAAGAGGACGACGTAGTCATTGCGACCACGAGCATTACCAAGTTGCCTCCCCTAGTCAAGTCTAGAACAAGTGTTGATGACCCATTTGTTAGAGGCAAAGTTGTCACCTGTGACACACCAGGTGAGACCAACTCATTTACATGA

Coding sequence (CDS)

ATGTGCCTCAAAACCCTTAACAAGGATAAAGGTGCCCTAGAAGAAGAAGAAAGAACATCGCTCATTCCACCCCCTAAGAAGTGCAAAGTTCTTGATGGTGTGTCTGGCTTGCAACCCAAAGAAAAGAAATGGAAGCCAGAAGTGACCATCAATCCAAAGCCATTGGCCATCCTTCCCCCTTTAAAAAGGCCATCCAAATCGCCCAGTCCTCCCCTACCTCCAAAAATCCAAACTCCTTCACCACCTCCACCAATCCAAAATCCACTTCCCAACCTCCAATCTCCCAAATCCAAACTCATCAGGCAAGCTAAGCCCATGTCGGCTATCCTTCTATCGTCACTCCACAATCCACTCACTACATCTATCCTCATCATCATACCACCACCCTCCGTCTCGCGACCTGACCTCAACCAACCCTTGCGTGACCAAAATGGTGTGGTTGGCGAAGAAGAGTTCCTTGACCTTAAAGAAGAACTGTCAGGCAATCCTCCTCCTTCATCGTCTATTATCAACCTTTTCAAAGAGGACGACGTAGTCATTGCGACCACGAGCATTACCAAGTTGCCTCCCCTAGTCAAGTCTAGAACAAGTGTTGATGACCCATTTGTTAGAGGCAAAGTTGTCACCTGTGACACACCAGGTGAGACCAACTCATTTACATGA

Protein sequence

MCLKTLNKDKGALEEEERTSLIPPPKKCKVLDGVSGLQPKEKKWKPEVTINPKPLAILPPLKRPSKSPSPPLPPKIQTPSPPPPIQNPLPNLQSPKSKLIRQAKPMSAILLSSLHNPLTTSILIIIPPPSVSRPDLNQPLRDQNGVVGEEEFLDLKEELSGNPPPSSSIINLFKEDDVVIATTSITKLPPLVKSRTSVDDPFVRGKVVTCDTPGETNSFT

Homology

[Close]

BLAST of PI0014930 vs. ExPASy TrEMBL
Match: A0A5A7SLS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00080 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-04
Identity = 45/88 (51.14%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 3   LKTLNKDKGALEEEERTSLIPPP---KKCKVLDGVSGLQPKEKKWKPEVTINPKPLAILP 62
           LKTLNK KG   EEE  SL PPP   K+ K  D  S  + KEK+WK + TINPKPL ILP
Sbjct: 84  LKTLNKVKG---EEEEASLPPPPSPLKRKKAHDNASSSKKKEKRWKQDATINPKPLTILP 143

Query: 63  ---PLKRPSKSPSPPLPPKIQTPSPPPP 85
              PL  P   P P   P  Q+   PPP
Sbjct: 144 LTLPLPPP---PYPKTQPPHQSYQHPPP 165

[Close]

BLAST of PI0014930 vs. NCBI nr
Match: KAA0031700.1 (hypothetical protein E6C27_scaffold139G004840 [Cucumis melo var. makuwa] >TYK04412.1 hypothetical protein E5676_scaffold409G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 5.3e-04
Identity = 45/88 (51.14%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 3   LKTLNKDKGALEEEERTSLIPPP---KKCKVLDGVSGLQPKEKKWKPEVTINPKPLAILP 62
           LKTLNK KG   EEE  SL PPP   K+ K  D  S  + KEK+WK + TINPKPL ILP
Sbjct: 84  LKTLNKVKG---EEEEASLPPPPSPLKRKKAHDNASSSKKKEKRWKQDATINPKPLTILP 143

Query: 63  ---PLKRPSKSPSPPLPPKIQTPSPPPP 85
              PL  P   P P   P  Q+   PPP
Sbjct: 144 LTLPLPPP---PYPKTQPPHQSYQHPPP 165

The following BLAST results are available for this feature:

BLAST of PI0014930 vs.


Match Name	E-value	Identity	Description

BLAST of PI0014930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLS8	2.6e-04	51.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0014930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031700.1	5.3e-04	51.14	hypothetical protein E6C27_scaffold139G004840 [Cucumis melo var. makuwa] >TYK044...	[more]

BLAST of PI0014930 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014930.1	PI0014930.1	mRNA