PI0014917 (gene) Melon (PI 482460) v1

Overview
NamePI0014917
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr01: 7955763 .. 7956104 (+)
RNA-Seq ExpressionPI0014917
SyntenyPI0014917
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATAACAACAGAAATGCCCCTCCGCCGCAAGCTGACCCAGAACCAAATGCTGCCTACATAGCACACGACTTGGATAGGCCAATTAGATCTTATGCGGCACCCAACCTCTACAACTTCAACCCAGGAATCGCCTACCCTGTATTCGGCGAGAACGTCAGGTTTGAAATCAAACCTGTTATGCTTCAAATGATTCAGAATGCCGGACAATTCGACGGACATCCTGGGGAAGATCCACACGAACATATAAGGAGCTTCTACTCCATCTGCGCTTCCTTCCATATGCCACGCATCTCACCTGAAGAACTAAGATTCGCTCTCTGTTCGGACTGTATGTAG

mRNA sequence

ATGGAAAATAACAACAGAAATGCCCCTCCGCCGCAAGCTGACCCAGAACCAAATGCTGCCTACATAGCACACGACTTGGATAGGCCAATTAGATCTTATGCGGCACCCAACCTCTACAACTTCAACCCAGGAATCGCCTACCCTGTATTCGGCGAGAACGTCAGGTTTGAAATCAAACCTGTTATGCTTCAAATGATTCAGAATGCCGGACAATTCGACGGACATCCTGGGGAAGATCCACACGAACATATAAGGAGCTTCTACTCCATCTGCGCTTCCTTCCATATGCCACGCATCTCACCTGAAGAACTAAGATTCGCTCTCTGTTCGGACTGTATGTAG

Coding sequence (CDS)

ATGGAAAATAACAACAGAAATGCCCCTCCGCCGCAAGCTGACCCAGAACCAAATGCTGCCTACATAGCACACGACTTGGATAGGCCAATTAGATCTTATGCGGCACCCAACCTCTACAACTTCAACCCAGGAATCGCCTACCCTGTATTCGGCGAGAACGTCAGGTTTGAAATCAAACCTGTTATGCTTCAAATGATTCAGAATGCCGGACAATTCGACGGACATCCTGGGGAAGATCCACACGAACATATAAGGAGCTTCTACTCCATCTGCGCTTCCTTCCATATGCCACGCATCTCACCTGAAGAACTAAGATTCGCTCTCTGTTCGGACTGTATGTAG

Protein sequence

MENNNRNAPPPQADPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVMLQMIQNAGQFDGHPGEDPHEHIRSFYSICASFHMPRISPEELRFALCSDCM
Homology
BLAST of PI0014917 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.6e-34
Identity = 73/103 (70.87%), Postives = 82/103 (79.61%), Query Frame = 0

Query: 4   NNRNAPPPQADPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVML 63
           NN+  P  QA    N  Y+A D DRPIRSYA+PNLY+FNPGIAYP F EN RFEIK VML
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 64  QMIQNAGQFDGHPGEDPHEHIRSFYSICASFHMPRISPEELRF 107
           Q+IQNAGQF  HP +DPH++IR+FYSICASFHMP IS EELRF
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRF 107

BLAST of PI0014917 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.8e-31
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 0

Query: 4   NNRNAPPPQADPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVML 63
           NN+N P  Q   E N AY+AHDLD+PI+SYA+PNLY+FNPGIAY  FGENV FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 64  QMIQNAGQFDGHPGEDPHEHIRSFYSICASFHMPRIS 101
            M QNAGQF GHP EDP++HIR+FY ICASF+M RIS
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98

BLAST of PI0014917 vs. ExPASy TrEMBL
Match: A0A5D3BVN1 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00390 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.5e-28
Identity = 65/102 (63.73%), Postives = 74/102 (72.55%), Query Frame = 0

Query: 1   MENNNRNAPP--PQADPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEI 60
           M +N  N  P       + N   IAH+LD PIR+Y + NLY+FN GIAY VFGEN  FE+
Sbjct: 1   MASNKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEV 60

Query: 61  KPVMLQMIQNAGQFDGHPGEDPHEHIRSFYSICASFHMPRIS 101
           KPVMLQMIQ AGQFDG+ GEDPHEHI+SFYSICASFHM   S
Sbjct: 61  KPVMLQMIQKAGQFDGYQGEDPHEHIKSFYSICASFHMSNFS 102

BLAST of PI0014917 vs. ExPASy TrEMBL
Match: A0A5A7TNS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00350 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-19
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 0

Query: 18  NAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVMLQMIQNAGQFDGHPG 77
           N   IAH+L+ PI  YA+P+LY FN GI YP FG N RF++KP ML MIQ   QF G+  
Sbjct: 39  NPILIAHNLNNPINEYASPDLYVFNLGITYPAFG-NARFKMKPTMLHMIQTTVQFGGYLD 98

Query: 78  EDPHEHIRSFYSICASFHMPRISPEEL 105
           EDP +HI+S Y +C+SFH+P +S E+L
Sbjct: 99  EDPQDHIKSIYVMCSSFHLPCLSQEDL 124

BLAST of PI0014917 vs. ExPASy TrEMBL
Match: A0A6J1DVZ9 (uncharacterized protein LOC111024970 OS=Momordica charantia OX=3673 GN=LOC111024970 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.2e-15
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 0

Query: 13  ADPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVMLQMIQNAGQF 72
           A P  N   +  D +R IR+YAAP ++ F+P IA P   E  RFE+K +M QM+Q  GQF
Sbjct: 25  AAPPLNVILLVDDGERVIRAYAAPAIHGFHPVIAGPAI-EAERFELKSIMFQMLQTVGQF 84

Query: 73  DGHPGEDPHEHIRSFYSICASFHMPRISPEELRFAL 109
            G+P EDPH H+R F  +  SF+M  +S E LR  L
Sbjct: 85  FGNPSEDPHLHLRYFLEVSDSFNMQEVSKEALRLKL 119

BLAST of PI0014917 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 9.6e-34
Identity = 73/103 (70.87%), Postives = 82/103 (79.61%), Query Frame = 0

Query: 4   NNRNAPPPQADPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVML 63
           NN+  P  QA    N  Y+A D DRPIRSYA+PNLY+FNPGIAYP F EN RFEIK VML
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 64  QMIQNAGQFDGHPGEDPHEHIRSFYSICASFHMPRISPEELRF 107
           Q+IQNAGQF  HP +DPH++IR+FYSICASFHMP IS EELRF
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRF 107

BLAST of PI0014917 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 5.8e-31
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 0

Query: 4   NNRNAPPPQADPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVML 63
           NN+N P  Q   E N AY+AHDLD+PI+SYA+PNLY+FNPGIAY  FGENV FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 64  QMIQNAGQFDGHPGEDPHEHIRSFYSICASFHMPRIS 101
            M QNAGQF GHP EDP++HIR+FY ICASF+M RIS
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98

BLAST of PI0014917 vs. NCBI nr
Match: TYK02149.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 65/102 (63.73%), Postives = 74/102 (72.55%), Query Frame = 0

Query: 1   MENNNRNAPP--PQADPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEI 60
           M +N  N  P       + N   IAH+LD PIR+Y + NLY+FN GIAY VFGEN  FE+
Sbjct: 1   MASNKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEV 60

Query: 61  KPVMLQMIQNAGQFDGHPGEDPHEHIRSFYSICASFHMPRIS 101
           KPVMLQMIQ AGQFDG+ GEDPHEHI+SFYSICASFHM   S
Sbjct: 61  KPVMLQMIQKAGQFDGYQGEDPHEHIKSFYSICASFHMSNFS 102

BLAST of PI0014917 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 114.4 bits (285), Expect = 6.5e-22
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 0

Query: 5   NRNAPPPQADPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVMLQ 64
           N NA    A+ + N   +AHD +RP+R YA+PNLYNF PGI  P F  N RFE+KPVMLQ
Sbjct: 57  NANA-QEHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQ 116

Query: 65  MIQNAGQFDGHPGEDPHEHIRSFYSICASFHMPRISPEELRFAL 109
           M+Q AGQF G  GEDPH H++SF  IC++F M  +  + +R  L
Sbjct: 117 MLQAAGQFGGATGEDPHAHLKSFLEICSAFPMAGVPQDSIRLTL 159

BLAST of PI0014917 vs. NCBI nr
Match: XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-19
Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = 0

Query: 2   ENNNRNAPPPQAD---PEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEI 61
           +NNN  AP        P  +  ++A D + PIR+YAAPNLY+F+PGI+ P+  EN RFEI
Sbjct: 37  DNNNNEAPEGNQGVNRPVQDPVFLAADHNIPIRNYAAPNLYDFSPGISRPIVEENARFEI 96

Query: 62  KPVMLQMIQNAGQFDGHPGEDPHEHIRSFYSICASFHMPRISPEELRFAL 109
           KPVM+QMIQN  QF+    E+PH H+  F  +C++F +P I+P  +R  L
Sbjct: 97  KPVMVQMIQNMRQFESLQCENPHAHLTIFVEMCSTFSIPGITPVGIRLYL 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2U74.6e-3470.87Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UDN82.8e-3170.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BVN16.5e-2863.73Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7TNS81.1e-1955.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1DVZ98.2e-1546.88uncharacterized protein LOC111024970 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
Match NameE-valueIdentityDescription
KAA0062403.19.6e-3470.87putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
KAA0051815.15.8e-3170.10hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142... [more]
TYK02149.11.3e-2763.73putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa][more]
WP_217833177.16.5e-2252.88retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
XP_038887458.12.3e-1947.27uncharacterized protein LOC120077591 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0014917.1PI0014917.1mRNA