PI0014590 (gene) Melon (PI 482460) v1

Overview


Name	PI0014590
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr06: 15983601 .. 15984235 (+)
RNA-Seq Expression	PI0014590
Synteny	PI0014590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTTCGTCGAGGGCCCCGAAGCATACATGGACCAGAGAAGAAAAGTCAACCCTCGTGGAATGTTTGGTGGAGTTGGTATCCGCGGGAGGATGGAAATCGAACAACGGCACATTCCGACCCGGTTACATGGCAATGATTCTGCGAATGATGATGGAAAAGCTCCCAGGGTGTACCATCCAGGGGACCACTACTATTGATTGTCGGATCAAGACGCTTAAAAGAACCTTTCAAACTATATTAGAGATGCGGGGCCCTACCTGCAGTGGATTCGGTTGGAATGACGAGGTGAAATGAATAATTGCTAAGAAGGAGCTATTTGAGAATTAGGTGAAGGTATGTAGTTTCGTGATTATCCAGAATTGGCGTAATGGAATTATGTTCGGTTCCTGTATGCAATGAAACTGAAAAAGTGTTTGTATTTTTTTGCACAGAGTCACCTCGCAGCAAAGGGTCTTTTGAACAAGCTGTTTCCATACTATGACGAACTGTCCTATGTCTTCGGGAAAGACCGCACTACGGGACAACGTGCAGAATCATTCATAGATGTCGGTTCCAATGTGCCAGGTGGTTTTGAGCCATTTGCAGGTGACGATGTTTCGAATATGGACATCCCATGCATGTACACCTAG

mRNA sequence

ATGGCAAGTTCGTCGAGGGCCCCGAAGCATACATGGACCAGAGAAGAAAAGTCAACCCTCGTGGAATGTTTGGTGGAGTTGGTATCCGCGGGAGGATGGAAATCGAACAACGGCACATTCCGACCCGGTTACATGGCAATGATTCTGCGAATGATGATGGAAAAGCTCCCAGGGTGTACCATCCAGGGGACCACTACTATTGATTGTCGGATCAAGACGCTTAAAAGAACCTTTCAAACTATATTAGAGATGCGGGGCCCTACCTGCAGTGGATTCGGTTGGAATGACGAGAGTCACCTCGCAGCAAAGGGTCTTTTGAACAAGCTGTTTCCATACTATGACGAACTGTCCTATGTCTTCGGGAAAGACCGCACTACGGGACAACGTGCAGAATCATTCATAGATGTCGGTTCCAATGTGCCAGGTGGTTTTGAGCCATTTGCAGGTGACGATGTTTCGAATATGGACATCCCATGCATGTACACCTAG

Coding sequence (CDS)

ATGGCAAGTTCGTCGAGGGCCCCGAAGCATACATGGACCAGAGAAGAAAAGTCAACCCTCGTGGAATGTTTGGTGGAGTTGGTATCCGCGGGAGGATGGAAATCGAACAACGGCACATTCCGACCCGGTTACATGGCAATGATTCTGCGAATGATGATGGAAAAGCTCCCAGGGTGTACCATCCAGGGGACCACTACTATTGATTGTCGGATCAAGACGCTTAAAAGAACCTTTCAAACTATATTAGAGATGCGGGGCCCTACCTGCAGTGGATTCGGTTGGAATGACGAGAGTCACCTCGCAGCAAAGGGTCTTTTGAACAAGCTGTTTCCATACTATGACGAACTGTCCTATGTCTTCGGGAAAGACCGCACTACGGGACAACGTGCAGAATCATTCATAGATGTCGGTTCCAATGTGCCAGGTGGTTTTGAGCCATTTGCAGGTGACGATGTTTCGAATATGGACATCCCATGCATGTACACCTAG

Protein sequence

MASSSRAPKHTWTREEKSTLVECLVELVSAGGWKSNNGTFRPGYMAMILRMMMEKLPGCTIQGTTTIDCRIKTLKRTFQTILEMRGPTCSGFGWNDESHLAAKGLLNKLFPYYDELSYVFGKDRTTGQRAESFIDVGSNVPGGFEPFAGDDVSNMDIPCMYT

Homology

[Close]

BLAST of PI0014590 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 116/179 (64.80%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 1   MASSSRAPKHTWTREEKSTLVECLVELVSAGGWKSNNGTFRPGYMAMILRMMMEKLPGCT 60
           M++S+RAP+H WTREE+ TLVECL+ELVS GGWKS+NGTFRPGY+A ++RMM EKLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IQGTTTIDCRIKTLKRTFQTILEMRGPTCSGFGWNDE----------------SHLAAKG 120
           ++ TT IDCRIKTLKRTFQ I EMRGP CSGFGWNDE                SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKLFPYYDELSYVFGKDRTTGQRAESFIDVGSNVP-GGFEPFAGDDVSNMDIPCMYT 163
           LLNK FPYYDEL+YVFG+DR TG+ AE+F DVGSN P GG++ F   D  N D P +Y+
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGD-GNEDFPPVYS 178

[Close]

BLAST of PI0014590 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 116/179 (64.80%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 1   MASSSRAPKHTWTREEKSTLVECLVELVSAGGWKSNNGTFRPGYMAMILRMMMEKLPGCT 60
           M++S+RAP+H WTREE+ TLVECL+ELVS GGWKS+NGTFRPGY+A ++RMM EKLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IQGTTTIDCRIKTLKRTFQTILEMRGPTCSGFGWNDE----------------SHLAAKG 120
           ++ TT IDCRIKTLKRTFQ I EMRGP CSGFGWNDE                SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKLFPYYDELSYVFGKDRTTGQRAESFIDVGSNVP-GGFEPFAGDDVSNMDIPCMYT 163
           LLNK FPYYDEL+YVFG+DR TG+ AE+F DVGSN P GG++ F   D  N D P +Y+
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGD-GNEDFPPVYS 178

[Close]

BLAST of PI0014590 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 116/179 (64.80%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 1   MASSSRAPKHTWTREEKSTLVECLVELVSAGGWKSNNGTFRPGYMAMILRMMMEKLPGCT 60
           M++S+RAP+H WTREE+ TLVECL+ELVS GGWKS+NGTFRPGY+A ++RMM EKLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IQGTTTIDCRIKTLKRTFQTILEMRGPTCSGFGWNDE----------------SHLAAKG 120
           ++ TT IDCRIKTLKRTFQ I EMRGP CSGFGWNDE                SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKLFPYYDELSYVFGKDRTTGQRAESFIDVGSNVP-GGFEPFAGDDVSNMDIPCMYT 163
           LLNK FPYYDEL+YVFG+DR TG+ AE+F DVGSN P GG++ F   D  N D P +Y+
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGD-GNEDFPPVYS 178

[Close]

BLAST of PI0014590 vs. ExPASy TrEMBL
Match: A0A5D3BCN9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001070 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 116/179 (64.80%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 1   MASSSRAPKHTWTREEKSTLVECLVELVSAGGWKSNNGTFRPGYMAMILRMMMEKLPGCT 60
           M++S+RAP+H WTREE+ TLVECL+ELVS GGWKS+NGTFRPGY+A ++RMM EKLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IQGTTTIDCRIKTLKRTFQTILEMRGPTCSGFGWNDE----------------SHLAAKG 120
           ++ TT IDCRIKTLKRTFQ I EMRGP CSGFGWNDE                SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKLFPYYDELSYVFGKDRTTGQRAESFIDVGSNVP-GGFEPFAGDDVSNMDIPCMYT 163
           LLNK FPYYDEL+YVFG+DR TG+ AE+F DVGSN P GG++ F   D  N D P +Y+
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGD-GNEDFPPVYS 178

[Close]

BLAST of PI0014590 vs. ExPASy TrEMBL
Match: A0A5A7SRU1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00100 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 116/179 (64.80%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 1   MASSSRAPKHTWTREEKSTLVECLVELVSAGGWKSNNGTFRPGYMAMILRMMMEKLPGCT 60
           M++S+RAP+H WTREE+ TLVECL+ELVS GGWKS+NGTFRPGY+A ++RMM EKLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IQGTTTIDCRIKTLKRTFQTILEMRGPTCSGFGWNDE----------------SHLAAKG 120
           ++ TT IDCRIKTLKRTFQ I EMRGP CSGFGWNDE                SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKLFPYYDELSYVFGKDRTTGQRAESFIDVGSNVP-GGFEPFAGDDVSNMDIPCMYT 163
           LLNK FPYYDEL+YVFG+DR TG+ AE+F DVGSN P GG++ F   D  N D P +Y+
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGD-GNEDFPPVYS 178

[Close]

BLAST of PI0014590 vs. NCBI nr
Match: TYJ96194.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97116.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01046.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK12167.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.7 bits (613), Expect = 8.6e-60
Identity = 116/179 (64.80%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 1   MASSSRAPKHTWTREEKSTLVECLVELVSAGGWKSNNGTFRPGYMAMILRMMMEKLPGCT 60
           M++S+RAP+H WTREE+ TLVECL+ELVS GGWKS+NGTFRPGY+A ++RMM EKLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IQGTTTIDCRIKTLKRTFQTILEMRGPTCSGFGWNDE----------------SHLAAKG 120
           ++ TT IDCRIKTLKRTFQ I EMRGP CSGFGWNDE                SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKLFPYYDELSYVFGKDRTTGQRAESFIDVGSNVP-GGFEPFAGDDVSNMDIPCMYT 163
           LLNK FPYYDEL+YVFG+DR TG+ AE+F DVGSN P GG++ F   D  N D P +Y+
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGD-GNEDFPPVYS 178

[Close]

BLAST of PI0014590 vs. NCBI nr
Match: KAA0031555.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0043921.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047622.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049406.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.7 bits (613), Expect = 8.6e-60
Identity = 116/179 (64.80%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 1   MASSSRAPKHTWTREEKSTLVECLVELVSAGGWKSNNGTFRPGYMAMILRMMMEKLPGCT 60
           M++S+RAP+H WTREE+ TLVECL+ELVS GGWKS+NGTFRPGY+A ++RMM EKLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IQGTTTIDCRIKTLKRTFQTILEMRGPTCSGFGWNDE----------------SHLAAKG 120
           ++ TT IDCRIKTLKRTFQ I EMRGP CSGFGWNDE                SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKLFPYYDELSYVFGKDRTTGQRAESFIDVGSNVP-GGFEPFAGDDVSNMDIPCMYT 163
           LLNK FPYYDEL+YVFG+DR TG+ AE+F DVGSN P GG++ F   D  N D P +Y+
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGD-GNEDFPPVYS 178

[Close]

BLAST of PI0014590 vs. NCBI nr
Match: KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.7 bits (613), Expect = 8.6e-60
Identity = 116/179 (64.80%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 1   MASSSRAPKHTWTREEKSTLVECLVELVSAGGWKSNNGTFRPGYMAMILRMMMEKLPGCT 60
           M++S+RAP+H WTREE+ TLVECL+ELVS GGWKS+NGTFRPGY+A ++RMM EKLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IQGTTTIDCRIKTLKRTFQTILEMRGPTCSGFGWNDE----------------SHLAAKG 120
           ++ TT IDCRIKTLKRTFQ I EMRGP CSGFGWNDE                SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKLFPYYDELSYVFGKDRTTGQRAESFIDVGSNVP-GGFEPFAGDDVSNMDIPCMYT 163
           LLNK FPYYDEL+YVFG+DR TG+ AE+F DVGSN P GG++ F   D  N D P +Y+
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGD-GNEDFPPVYS 178

[Close]

BLAST of PI0014590 vs. NCBI nr
Match: KAA0044610.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.7 bits (613), Expect = 8.6e-60
Identity = 116/179 (64.80%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 1   MASSSRAPKHTWTREEKSTLVECLVELVSAGGWKSNNGTFRPGYMAMILRMMMEKLPGCT 60
           M++S+RAP+H WTREE+ TLVECL+ELVS GGWKS+NGTFRPGY+A ++RMM EKLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IQGTTTIDCRIKTLKRTFQTILEMRGPTCSGFGWNDE----------------SHLAAKG 120
           ++ TT IDCRIKTLKRTFQ I EMRGP CSGFGWNDE                SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKLFPYYDELSYVFGKDRTTGQRAESFIDVGSNVP-GGFEPFAGDDVSNMDIPCMYT 163
           LLNK FPYYDEL+YVFG+DR TG+ AE+F DVGSN P GG++ F   D  N D P +Y+
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGD-GNEDFPPVYS 178

[Close]

BLAST of PI0014590 vs. NCBI nr
Match: KAA0038065.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.7 bits (613), Expect = 8.6e-60
Identity = 116/179 (64.80%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 1   MASSSRAPKHTWTREEKSTLVECLVELVSAGGWKSNNGTFRPGYMAMILRMMMEKLPGCT 60
           M++S+RAP+H WTREE+ TLVECL+ELVS GGWKS+NGTFRPGY+A ++RMM EKLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IQGTTTIDCRIKTLKRTFQTILEMRGPTCSGFGWNDE----------------SHLAAKG 120
           ++ TT IDCRIKTLKRTFQ I EMRGP CSGFGWNDE                SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKLFPYYDELSYVFGKDRTTGQRAESFIDVGSNVP-GGFEPFAGDDVSNMDIPCMYT 163
           LLNK FPYYDEL+YVFG+DR TG+ AE+F DVGSN P GG++ F   D  N D P +Y+
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGD-GNEDFPPVYS 178

The following BLAST results are available for this feature:

BLAST of PI0014590 vs.


Match Name	E-value	Identity	Description

BLAST of PI0014590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CWL2	4.1e-60	64.80	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TRV1	4.1e-60	64.80	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCZ1	4.1e-60	64.80	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BCN9	4.1e-60	64.80	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SRU1	4.1e-60	64.80	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0014590 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96194.1	8.6e-60	64.80	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon p...	[more]
KAA0031555.1	8.6e-60	64.80	retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon...	[more]
KAA0032766.1	8.6e-60	64.80	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0044610.1	8.6e-60	64.80	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038065.1	8.6e-60	64.80	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0014590 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 11..99 e-value: 4.6E-6 score: 27.5
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 3..136
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 3..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014590.1	PI0014590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane