PI0014581 (gene) Melon (PI 482460) v1

Overview


Name	PI0014581
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ribosomal protein L37, mitochondrial
Location	chr10: 13716308 .. 13717598 (+)
RNA-Seq Expression	PI0014581
Synteny	PI0014581

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCGGCTCCTATTTATCCATATGAAACACGTGAGCTTTCTCTTTTCCTTATGTTTATTTATCCTTGTTGTTTCCTGCTCGAAAAAAGTTGTGTAGCAATACTAAAGTCTTTTTGTAGTTTTCTTTTTTTCTTTGACACAAGTTATTTCTTCATCATTTTTGTTCTATTATTTAAATTGATACTATGTTTACATATGGATCCCTATGTCCTTACATTCCATTTGGGCTTGCTGGAGGACCCTAAAAGTTTGGAAAATTAGGGAGCAATTGATTTGATTTTTGTTTGCAATTTAGGCAGATTCAGTGATATCTGTTGTTTTTCTTTCAGCTTCATTAGGAGATGTCTCCATTCGAGGGATCAACATTGTCCCATATAATAAAGTGTTGTATAGTTTATGTGATAAAGACATAAGCTATTGAGGAAAAAAATGCTTTCTAGTGAACAGAAATTTGGAAAGATGGTATTATGCACTATTCCCGACTCCCAAAAAGAAATGCAGAAGCTTTGCTGTTTAATAACTTATTTTTCATACTTCATACGTTCATACTCAAAATTTGATCCAGCAGATAGTTGAAGAGGACATGGTAAAGAAATTATTTTTCTGCTACTTTGTATAGATTGGAGTAAGTTTAGTTTTATAATTTTTGGCCTTTCTTGTCACTGTTATACTTGGAGAAAGAGTTGTTCTGGCACATGTTTTCAAGAAGTTCAAACATTGAGATGCATTTTGTTTGTTTTTTTCTGTTTGAAACCATATCAGGAAGTTTATTTGTTAGCTTGTAAGATACACAATCCCTAAAGTATACGCCTTTGAGCTGTTAGTGTTGTATCAAACTGTTGGATTCTTACCAAAGATGATTCAAAGAAAGGCGGACTACCATAGCTGTTGAATTAGTTCATCGGAACTCTAATGAATTTGTTCGTTTCTGTGTTGCAGAGAAGAAAAATATGGGTTTGAACCAAATTAGGTTGTTTAGAAGAAGCATTATTGTCAATAGCAAAGACCTAATACAACTGACATCTGTCTGAATATTCGCTGCTGGAGGCAAATCAAAGAAGGGATCTAAAGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAGTCTACTACTGTAGTTGGTGCCAATATTTTCGAAGAAGGCGCAGATCCAAAAATTATGGCAGACCCAGAGTCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCACCTCTAAGCGATTACGGAGGAAGAATGTCGAAACCCTTTCCTACGGATCCACTTTGTTAA

mRNA sequence

ATGCCTCCGGCTCCTATTTATCCATATGAAACACAGAAGAAAAATATGGGTTTGAACCAAATTAGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAGTCTACTACTGTAGTTGGTGCCAATATTTTCGAAGAAGGCGCAGATCCAAAAATTATGGCAGACCCAGAGTCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCACCTCTAAGCGATTACGGAGGAAGAATGTCGAAACCCTTTCCTACGGATCCACTTTGTTAA

Coding sequence (CDS)

ATGCCTCCGGCTCCTATTTATCCATATGAAACACAGAAGAAAAATATGGGTTTGAACCAAATTAGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAGTCTACTACTGTAGTTGGTGCCAATATTTTCGAAGAAGGCGCAGATCCAAAAATTATGGCAGACCCAGAGTCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCACCTCTAAGCGATTACGGAGGAAGAATGTCGAAACCCTTTCCTACGGATCCACTTTGTTAA

Protein sequence

MPPAPIYPYETQKKNMGLNQIRGAAADAPKASILSKEVKSTTVVGANIFEEGADPKIMADPESVWLWHLLDKHPPLSDYGGRMSKPFPTDPLC

Homology

[Close]

BLAST of PI0014581 vs. ExPASy TrEMBL
Match: A0A5D3CXE8 (39S ribosomal protein L54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00130 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.9e-19
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 23  GAAADAPKASILSKEVKSTTVVGANIFEEGADPKIMADPE-SVWLWHLLDKHPPLSDYGG 82
           GAAADAPKASILSKEVKSTTVVGANI +EGADPKIMAD E   WLWHLLDKHPPLS+   
Sbjct: 69  GAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRR 128

Query: 83  RMSKPFP 89
           + ++  P
Sbjct: 129 KNAESLP 135

[Close]

BLAST of PI0014581 vs. ExPASy TrEMBL
Match: A0A1S3B544 (54S ribosomal protein L37, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486119 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.9e-19
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 23  GAAADAPKASILSKEVKSTTVVGANIFEEGADPKIMADPE-SVWLWHLLDKHPPLSDYGG 82
           GAAADAPKASILSKEVKSTTVVGANI +EGADPKIMAD E   WLWHLLDKHPPLS+   
Sbjct: 42  GAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRR 101

Query: 83  RMSKPFP 89
           + ++  P
Sbjct: 102 KNAESLP 108

[Close]

BLAST of PI0014581 vs. ExPASy TrEMBL
Match: A0A1S4DUD4 (39S ribosomal protein L54, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486119 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.9e-19
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 23  GAAADAPKASILSKEVKSTTVVGANIFEEGADPKIMADPE-SVWLWHLLDKHPPLSDYGG 82
           GAAADAPKASILSKEVKSTTVVGANI +EGADPKIMAD E   WLWHLLDKHPPLS+   
Sbjct: 69  GAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRR 128

Query: 83  RMSKPFP 89
           + ++  P
Sbjct: 129 KNAESLP 135

[Close]

BLAST of PI0014581 vs. ExPASy TrEMBL
Match: A0A0A0KYS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539610 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.5e-17
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 23  GAAADAPKASILSKEVKSTTVVGANIFEEGADPKIMADPE-SVWLWHLLDKHPPLSDYGG 82
           GAAADAPKASILSKEVKSTTVVGANI +EGADPKIMAD E   WLW+LL+KHPPLS+   
Sbjct: 40  GAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRR 99

Query: 83  RMSKPFP 89
           + ++  P
Sbjct: 100 KNAESLP 106

[Close]

BLAST of PI0014581 vs. ExPASy TrEMBL
Match: A0A1R3HFP3 (Ribosomal protein L37, mitochondrial OS=Corchorus olitorius OX=93759 GN=COLO4_29287 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.0e-16
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 22  RGAAADAPKASILSKEVKSTTVVGANIFEEGADPKIMADPE-SVWLWHLLDKHPPLSDYG 81
           +GAA+DAPKASILSKEVKSTTVVGANI ++GADPKI+ D E   WLWHLLDK P LS+  
Sbjct: 37  KGAASDAPKASILSKEVKSTTVVGANILKDGADPKILPDSEYPDWLWHLLDKRPALSELR 96

Query: 82  GRMSKPFPTDPL 93
            +    FP + L
Sbjct: 97  RKNIDTFPYEDL 108

[Close]

BLAST of PI0014581 vs. NCBI nr
Match: XP_008442187.1 (PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 23  GAAADAPKASILSKEVKSTTVVGANIFEEGADPKIMADPE-SVWLWHLLDKHPPLSDYGG 82
           GAAADAPKASILSKEVKSTTVVGANI +EGADPKIMAD E   WLWHLLDKHPPLS+   
Sbjct: 42  GAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRR 101

Query: 83  RMSKPFP 89
           + ++  P
Sbjct: 102 KNAESLP 108

[Close]

BLAST of PI0014581 vs. NCBI nr
Match: XP_016899597.1 (PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo] >KAA0041217.1 39S ribosomal protein L54 [Cucumis melo var. makuwa] >TYK16020.1 39S ribosomal protein L54 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 23  GAAADAPKASILSKEVKSTTVVGANIFEEGADPKIMADPE-SVWLWHLLDKHPPLSDYGG 82
           GAAADAPKASILSKEVKSTTVVGANI +EGADPKIMAD E   WLWHLLDKHPPLS+   
Sbjct: 69  GAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRR 128

Query: 83  RMSKPFP 89
           + ++  P
Sbjct: 129 KNAESLP 135

[Close]

BLAST of PI0014581 vs. NCBI nr
Match: XP_038883607.1 (54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_038883608.1 54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 100.9 bits (250), Expect = 6.1e-18
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 23 GAAADAPKASILSKEVKSTTVVGANIFEEGADPKIMADPE-SVWLWHLLDKHPPLSD 79
          GAAADAPKAS LSKEVKSTTVVGANI +EGADPKIMAD E  VWLWHLLDKHPPLS+
Sbjct: 41 GAAADAPKASTLSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSE 97

[Close]

BLAST of PI0014581 vs. NCBI nr
Match: XP_038883606.1 (39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 100.9 bits (250), Expect = 6.1e-18
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 23  GAAADAPKASILSKEVKSTTVVGANIFEEGADPKIMADPE-SVWLWHLLDKHPPLSD 79
           GAAADAPKAS LSKEVKSTTVVGANI +EGADPKIMAD E  VWLWHLLDKHPPLS+
Sbjct: 49  GAAADAPKASTLSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSE 105

[Close]

BLAST of PI0014581 vs. NCBI nr
Match: KAE8649745.1 (hypothetical protein Csa_012025 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 3.0e-17
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 23  GAAADAPKASILSKEVKSTTVVGANIFEEGADPKIMADPE-SVWLWHLLDKHPPLSDYGG 82
           GAAADAPKASILSKEVKSTTVVGANI +EGADPKIMAD E   WLW+LL+KHPPLS+   
Sbjct: 137 GAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRR 196

Query: 83  RMSKPFP 89
           + ++  P
Sbjct: 197 KNAESLP 203

[Close]

BLAST of PI0014581 vs. TAIR 10
Match: AT3G01740.1 (Mitochondrial ribosomal protein L37 )

HSP 1 Score: 80.9 bits (198), Expect = 6.1e-16
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 23  GAAADAPKASILSKEVKSTTVVGANIFEEGADPKIMADPE-SVWLWHLLDKHPPLSDYGG 82
           G A+DAPK S L+KE+KSTTVVGAN  ++G+DPKI+ D +   WLWHLLDK P LS+   
Sbjct: 34  GGASDAPKGSSLTKEIKSTTVVGANTLKDGSDPKILPDSDYPDWLWHLLDKRPALSELRR 93

Query: 83  RMSKPFPTDPL 93
           +  +  P D L
Sbjct: 94  KNVETLPYDDL 104

[Close]

BLAST of PI0014581 vs. TAIR 10
Match: AT5G14290.1 (Mitochondrial ribosomal protein L37 )

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-10
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 27 DAPKASILSKEVKSTTVVGANIFEEGADPKIMADPESV-WLWHLLDKHPPLSD 79
          DAPKAS LSKE+KS+ VV AN  ++G DPKI+ + +   +LWHLLDK P LS+
Sbjct: 44 DAPKASNLSKEIKSSMVVSANTLKDGLDPKILPNSDHPDYLWHLLDKRPALSE 96

The following BLAST results are available for this feature:

BLAST of PI0014581 vs.


Match Name	E-value	Identity	Description

BLAST of PI0014581 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXE8	5.9e-19	76.12	39S ribosomal protein L54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B544	5.9e-19	76.12	54S ribosomal protein L37, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A1S4DUD4	5.9e-19	76.12	39S ribosomal protein L54, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0KYS4	1.5e-17	73.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539610 PE=4 SV=1	[more]
A0A1R3HFP3	8.0e-16	65.28	Ribosomal protein L37, mitochondrial OS=Corchorus olitorius OX=93759 GN=COLO4_29...	[more]

BLAST of PI0014581 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442187.1	1.2e-18	76.12	PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo]	[more]
XP_016899597.1	1.2e-18	76.12	PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo] >K...	[more]
XP_038883607.1	6.1e-18	87.72	54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_0388...	[more]
XP_038883606.1	6.1e-18	87.72	39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida]	[more]
KAE8649745.1	3.0e-17	73.13	hypothetical protein Csa_012025 [Cucumis sativus]	[more]

BLAST of PI0014581 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01740.1	6.1e-16	54.93	Mitochondrial ribosomal protein L37	[more]
AT5G14290.1	1.0e-10	58.49	Mitochondrial ribosomal protein L37	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013870	Ribosomal protein L37, mitochondrial	PFAM	PF08561	Ribosomal_L37	coord: 34..73 e-value: 1.2E-5 score: 25.9
IPR013870	Ribosomal protein L37, mitochondrial	PANTHER	PTHR28595	39S RIBOSOMAL PROTEIN L54, MITOCHONDRIAL	coord: 22..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014581.1	PI0014581.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome