PI0014461 (gene) Melon (PI 482460) v1

Overview


Name	PI0014461
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	MuDRA-like transposase
Location	chr05: 15964320 .. 15964906 (+)
RNA-Seq Expression	PI0014461
Synteny	PI0014461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAGAAAGAATACATTGGCGGTCAAATGAAAGGGTTGATTGTGGATGTCGGTATAAAGTTTGAGGACTTTTTACGAGAAATTTATAGAATTAGTGGGATAAAGTTAGTTGAGTTTGATTTGGTTCTAAGATGTTTGTACAATGTGAAGCCCTTTATGTCTTTGTTATTAGCAATCAAGAAAATCTTCACTTTTACCTAACAGGTGATTATGTGTGTCAAGTTGCAAGTTTGGTTTCAAAGGTACCTATAGTAGTCCATCAATCTAGGAGTATAGCATCGCCATTTCCTATTCAAATGGTCCAAAATGTTTCTTCATTCACATATGAGCTTCAATTTATCCTCAAATACAATGTGGGTTTGAATGAGTTTCGATCTTTGAGTCTATTGATTAATAATGTGTGCCCATTCAAATTGGGAGATGATACAGATGGATTGGTCAATAGAGAACCTGTAGACATATCAGATTATTGTGTTAATAATAATGAGTATGTATATGATGTGGAGATGTCGTTTGATTTTGATGTCGATGTTAATGTGGAAGTTGTAGAGGTAACTGAGGCAGATGGTAGTGCTCATCATTAG

mRNA sequence

ATGAGTGAGAAAGAATACATTGGCGGTCAAATGAAAGGGTTGATTGTGGATGTCGGTGATTATGTGTGTCAAGTTGCAAGTTTGGTTTCAAAGGTACCTATAGTAGTCCATCAATCTAGGAGTATAGCATCGCCATTTCCTATTCAAATGGTCCAAAATGTTTCTTCATTCACATATGAGCTTCAATTTATCCTCAAATACAATGTGGGTTTGAATGAGTTTCGATCTTTGAGTCTATTGATTAATAATGTGTGCCCATTCAAATTGGGAGATGATACAGATGGATTGGTCAATAGAGAACCTGTAGACATATCAGATTATTGTGTTAATAATAATGAGTATGTATATGATGTGGAGATGTCGTTTGATTTTGATGTCGATGTTAATGTGGAAGTTGTAGAGGTAACTGAGGCAGATGGTAGTGCTCATCATTAG

Coding sequence (CDS)

ATGAGTGAGAAAGAATACATTGGCGGTCAAATGAAAGGGTTGATTGTGGATGTCGGTGATTATGTGTGTCAAGTTGCAAGTTTGGTTTCAAAGGTACCTATAGTAGTCCATCAATCTAGGAGTATAGCATCGCCATTTCCTATTCAAATGGTCCAAAATGTTTCTTCATTCACATATGAGCTTCAATTTATCCTCAAATACAATGTGGGTTTGAATGAGTTTCGATCTTTGAGTCTATTGATTAATAATGTGTGCCCATTCAAATTGGGAGATGATACAGATGGATTGGTCAATAGAGAACCTGTAGACATATCAGATTATTGTGTTAATAATAATGAGTATGTATATGATGTGGAGATGTCGTTTGATTTTGATGTCGATGTTAATGTGGAAGTTGTAGAGGTAACTGAGGCAGATGGTAGTGCTCATCATTAG

Protein sequence

MSEKEYIGGQMKGLIVDVGDYVCQVASLVSKVPIVVHQSRSIASPFPIQMVQNVSSFTYELQFILKYNVGLNEFRSLSLLINNVCPFKLGDDTDGLVNREPVDISDYCVNNNEYVYDVEMSFDFDVDVNVEVVEVTEADGSAHH

Homology

[Close]

BLAST of PI0014461 vs. ExPASy TrEMBL
Match: A0A5A7V5P4 (Putative F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001800 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.5e-10
Identity = 53/117 (45.30%), Postives = 65/117 (55.56%), Query Frame = 0


Query: 29  VSKVPIVVHQSRSIASPFPIQMVQNVSSFT--YELQFILKYNVGLNEFRSLSLLINNVCP 88
           + KVPIV  QSRS    FPIQM QNV S T  +EL F                       
Sbjct: 437 ILKVPIVARQSRSTLLSFPIQMAQNVLSSTLYHELLF----------------------S 496

Query: 89  FKLGDDTDGLVNREPVDISDYCVNNNEYVYDVEMSFDFDVDVNVEVVEVTEADGSAH 144
            K+GD+T  LV++E V  S++ VN+NE  +DVEMS D DVD+ VE +EV E D SAH
Sbjct: 497 SKVGDNTYELVSKEYVGSSNHNVNDNENAFDVEMSSDPDVDITVEALEVFEVDVSAH 531

[Close]

BLAST of PI0014461 vs. ExPASy TrEMBL
Match: A0A5A7TN70 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00160 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 54  VSSFTYELQFILKYNVGLNEFRSLSLLINNVCPFKLGDDTDGLVNREPVDISDYCVNNNE 113
           +SS  + LQ IL YN  LN+ + LS L  N+CP KL DDT  LV+   V+  D   N+N+
Sbjct: 1   MSSHEHNLQLILVYNGVLNDVQDLSPLTTNMCPLKLEDDTKELVSMVHVESLDDDFNDND 60

Query: 114 YVYDVEMSFDFDVDVNVEVVEVTEADGSAH 144
             + ++MS ++ VDVN+E  EV++A+   H
Sbjct: 61  NAFGMKMSSNY-VDVNMEAFEVSKANVRTH 89

[Close]

BLAST of PI0014461 vs. ExPASy TrEMBL
Match: A0A5A7TK14 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00580 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 88  KLGDDTDGLVNREPVDISDYCVNNNEYVYDVEMSFDFDVDVNVEVVEVTEADGSAHH 145
           +L  DT+G V  E V++ +  VN+NE  +D+EMS DFDVDVNV+ +EV+EAD SAHH
Sbjct: 29  ELEGDTNGFVRMEHVELLNDDVNDNENAFDMEMSSDFDVDVNVDALEVSEADVSAHH 85

[Close]

BLAST of PI0014461 vs. ExPASy TrEMBL
Match: A0A5D3CFW2 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00280 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-04
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 54  VSSFTYELQFILKYNVGLNEFRSLSLLINNVCPFKLGDDTDGLVNREPVDISDYCVNNNE 113
           +SS    LQ I +YNV LNE R+LS L  NVCP +LGDDT+ LV+   V   D   N+N+
Sbjct: 8   LSSLEPNLQLIPEYNVVLNEVRNLSSLTVNVCPLELGDDTNRLVSMVHVKSFDDDFNDND 67

Query: 114 YVYDVEMS 122
             + +E+S
Sbjct: 68  NSFGMEIS 75

[Close]

BLAST of PI0014461 vs. NCBI nr
Match: KAA0061121.1 (putative F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK03792.1 putative F-box/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 7.2e-10
Identity = 53/117 (45.30%), Postives = 65/117 (55.56%), Query Frame = 0


Query: 29  VSKVPIVVHQSRSIASPFPIQMVQNVSSFT--YELQFILKYNVGLNEFRSLSLLINNVCP 88
           + KVPIV  QSRS    FPIQM QNV S T  +EL F                       
Sbjct: 437 ILKVPIVARQSRSTLLSFPIQMAQNVLSSTLYHELLF----------------------S 496

Query: 89  FKLGDDTDGLVNREPVDISDYCVNNNEYVYDVEMSFDFDVDVNVEVVEVTEADGSAH 144
            K+GD+T  LV++E V  S++ VN+NE  +DVEMS D DVD+ VE +EV E D SAH
Sbjct: 497 SKVGDNTYELVSKEYVGSSNHNVNDNENAFDVEMSSDPDVDITVEALEVFEVDVSAH 531

[Close]

BLAST of PI0014461 vs. NCBI nr
Match: KAA0041775.1 (hypothetical protein E6C27_scaffold67G001300 [Cucumis melo var. makuwa] >TYK27063.1 hypothetical protein E5676_scaffold95G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-06
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 88  KLGDDTDGLVNREPVDISDYCVNNNEYVYDVEMSFDFDVDVNVEVVEVTEADGSAHH 145
           +L  DT+G V  E V++ +  VN+NE  +D+EMS DFDVDVNV+ +EV+EAD SAHH
Sbjct: 29  ELEGDTNGFVRMEHVELLNDDVNDNENAFDMEMSSDFDVDVNVDALEVSEADVSAHH 85

[Close]

BLAST of PI0014461 vs. NCBI nr
Match: KAA0043247.1 (hypothetical protein E6C27_scaffold110G001310 [Cucumis melo var. makuwa] >TYK29311.1 hypothetical protein E5676_scaffold129G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-06
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 54  VSSFTYELQFILKYNVGLNEFRSLSLLINNVCPFKLGDDTDGLVNREPVDISDYCVNNNE 113
           +SS  + LQ IL YN  LN+ + LS L  N+CP KL DDT  LV+   V+  D   N+N+
Sbjct: 1   MSSHEHNLQLILVYNGVLNDVQDLSPLTTNMCPLKLEDDTKELVSMVHVESLDDDFNDND 60

Query: 114 YVYDVEMSFDFDVDVNVEVVEVTEADGSAH 144
             + ++MS ++ VDVN+E  EV++A+   H
Sbjct: 61  NAFGMKMSSNY-VDVNMEAFEVSKANVRTH 89

[Close]

BLAST of PI0014461 vs. NCBI nr
Match: KAA0067248.1 (MuDRA-like transposase [Cucumis melo var. makuwa] >TYK10857.1 MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-04
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 54  VSSFTYELQFILKYNVGLNEFRSLSLLINNVCPFKLGDDTDGLVNREPVDISDYCVNNNE 113
           +SS    LQ I +YNV LNE R+LS L  NVCP +LGDDT+ LV+   V   D   N+N+
Sbjct: 8   LSSLEPNLQLIPEYNVVLNEVRNLSSLTVNVCPLELGDDTNRLVSMVHVKSFDDDFNDND 67

Query: 114 YVYDVEMS 122
             + +E+S
Sbjct: 68  NSFGMEIS 75

The following BLAST results are available for this feature:

BLAST of PI0014461 vs.


Match Name	E-value	Identity	Description

BLAST of PI0014461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5P4	3.5e-10	45.30	Putative F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TN70	1.1e-06	42.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TK14	1.1e-06	56.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CFW2	2.9e-04	47.06	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]

BLAST of PI0014461 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061121.1	7.2e-10	45.30	putative F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK03792.1 putativ...	[more]
KAA0041775.1	2.2e-06	56.14	hypothetical protein E6C27_scaffold67G001300 [Cucumis melo var. makuwa] >TYK2706...	[more]
KAA0043247.1	2.2e-06	42.22	hypothetical protein E6C27_scaffold110G001310 [Cucumis melo var. makuwa] >TYK293...	[more]
KAA0067248.1	5.9e-04	47.06	MuDRA-like transposase [Cucumis melo var. makuwa] >TYK10857.1 MuDRA-like transpo...	[more]

BLAST of PI0014461 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014461.1	PI0014461.1	mRNA