PI0014449 (gene) Melon (PI 482460) v1

Overview


Name	PI0014449
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr11: 18919830 .. 18921090 (-)
RNA-Seq Expression	PI0014449
Synteny	PI0014449

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTGAAAATAGGGATTGATGAAGACACGATCTCAGACCCTGAGATCGTCTTCGGAGAGGTGAGGATTGATGAAGGAAGCATCAAGGTTGTGAAGAGGGATGATGTTATTAGTGCAATCGTATATTGATCTGTGAAGAAATCAATAAGAGAAATGTGAGAAAGAGAGGAAAAGAATGTAAGGCTTTGAGAAATCTAGAAAAAACGTAACTAGTGAAGGAGATTAGTCGCATTGGTTTTTGGGCGAACAATTAAATTTGACCTCTCGCTTATTTTTTTCCTTTTTTCTATAGTGTGTTTTTAAAAACGTTATGCTGAGATATTATTAAAAGAGCAATTTGTTGTAGTGCCCATTGATTCTAAACCTTTGAATTCTTGCTTGCATTGTTTTTGTTAGATATCTTTAGAATGCATTTTATATTTGTAGCTTCTAAAAAAGAAAAAAAAAAGGAAATCATATAAAAAAAAGTTTGCATGTTATTTTCTTTTTCTTTATTTTCCTTAGTGCATGACTAGGTTGTCTAATGCATCTAGTTTAGAATTTGTTAAAAATATTACATTGCATGAGAGGAATCTAAGAAAAGAAAAGAAAAAGGCTAGTAGCTCAATTAATCAATAATCTCATATTCACATAGAAAGAACCTCCTTTAGAGCCAATCCTAGAGAACCCTTTAAACAATACAGTGGGAGAGGAGGTGCCCGAGAAAACCCTTAAGGAACTTTATGAGCCCAATGTGCATCAAAGGCCAATAGGTCTAGTCATCCCACCTACCCTAACAAACTTCCACCTTAGGTCAGACTTGATCTCGAACTTACCCATCTTCAGAAGATCAAAAAGGGAGAATCCACGTAAGCATCTTAGAGATTTTCATGGACTTGTGAACTCCTTAGAACTCATGGGATAACTGAAGAATAGTTAATGGATTCATGGGGTAGCATCTGAGAGCAATGGATTCAAAAGGTTCGAGAAAGGGTTACAAAGAGAGATTTGTACTCCCGAAATAGCAATAGCAATGTGGACTGACTTTTCACAGTTAGTCGAGATTGCTTTGCGGGTTGAGAAGAAATTGGGAGAGGAGAAGTCGAAAGTAAAACCTAGTCAAGTTGTACCTTTGGCGGATGGATTTCGAGTCAAGACCAAAGACGTTTTACTCTTGGAATATCTAGGAGAACAAATTTCAAAGCTCGGTCCAATGGACAGTCATCTAGGCGAGATAGTAAAGGGAGTGCCTATCCGAGGCAGAGGTAGATACTTTTAG

mRNA sequence

ATGAGATTGAAAATAGGGATTGATGAAGACACGATCTCAGACCCTGAGATCGTCTTCGGAGAGAAAGAACCTCCTTTAGAGCCAATCCTAGAGAACCCTTTAAACAATACAGTGGGAGAGGAGGTGCCCGAGAAAACCCTTAAGGAACTTTATGAGCCCAATGTGCATCAAAGGCCAATAGGTCTAGTCATCCCACCTACCCTAACAAACTTCCACCTTAGGTCAGACTTGATCTCGAACTTACCCATCTTCAGAAGATCAAAAAGGGAGAATCCACCATCTGAGAGCAATGGATTCAAAAGGTTCGAGAAAGGGTTACAAAGAGAGATTTGTACTCCCGAAATAGCAATAGCAATGTGGACTGACTTTTCACAGTTAGTCGAGATTGCTTTGCGGGTTGAGAAGAAATTGGGAGAGGAGAAGTCGAAAGTAAAACCTAGTCAAGTTGTACCTTTGGCGGATGGATTTCGAGTCAAGACCAAAGACGTTTTACTCTTGGAATATCTAGGAGAACAAATTTCAAAGCTCGGTCCAATGGACAGTCATCTAGGCGAGATAGTAAAGGGAGTGCCTATCCGAGGCAGAGGTAGATACTTTTAG

Coding sequence (CDS)

ATGAGATTGAAAATAGGGATTGATGAAGACACGATCTCAGACCCTGAGATCGTCTTCGGAGAGAAAGAACCTCCTTTAGAGCCAATCCTAGAGAACCCTTTAAACAATACAGTGGGAGAGGAGGTGCCCGAGAAAACCCTTAAGGAACTTTATGAGCCCAATGTGCATCAAAGGCCAATAGGTCTAGTCATCCCACCTACCCTAACAAACTTCCACCTTAGGTCAGACTTGATCTCGAACTTACCCATCTTCAGAAGATCAAAAAGGGAGAATCCACCATCTGAGAGCAATGGATTCAAAAGGTTCGAGAAAGGGTTACAAAGAGAGATTTGTACTCCCGAAATAGCAATAGCAATGTGGACTGACTTTTCACAGTTAGTCGAGATTGCTTTGCGGGTTGAGAAGAAATTGGGAGAGGAGAAGTCGAAAGTAAAACCTAGTCAAGTTGTACCTTTGGCGGATGGATTTCGAGTCAAGACCAAAGACGTTTTACTCTTGGAATATCTAGGAGAACAAATTTCAAAGCTCGGTCCAATGGACAGTCATCTAGGCGAGATAGTAAAGGGAGTGCCTATCCGAGGCAGAGGTAGATACTTTTAG

Protein sequence

MRLKIGIDEDTISDPEIVFGEKEPPLEPILENPLNNTVGEEVPEKTLKELYEPNVHQRPIGLVIPPTLTNFHLRSDLISNLPIFRRSKRENPPSESNGFKRFEKGLQREICTPEIAIAMWTDFSQLVEIALRVEKKLGEEKSKVKPSQVVPLADGFRVKTKDVLLLEYLGEQISKLGPMDSHLGEIVKGVPIRGRGRYF

Homology

[Close]

BLAST of PI0014449 vs. ExPASy TrEMBL
Match: A0A5D3BF34 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00570 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.2e-18
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 25  PLEPILENPLNNTVGEEVPEKTLKELYEPNVHQRPIGLVIPPTLTNFHLRSDLISNLPIF 84
           P E  LEN LNN + EE PE+TL+ELYE ++HQRPI +VIPPT TNFHLRS+LISNLPIF
Sbjct: 8   PSEASLENNLNNPMEEETPERTLRELYELDIHQRPISIVIPPTTTNFHLRSNLISNLPIF 67

Query: 85  RRSKRENPPSESNGF 100
           RRS  E+P      F
Sbjct: 68  RRSNGEDPHKHLKDF 82

[Close]

BLAST of PI0014449 vs. ExPASy TrEMBL
Match: A0A5A7V727 (Peptidase A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00400 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.0e-12
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 38  VGEEVPEKTLKELYEPNVHQRPIGLVIPPTLTNFHLRSDLISNLPIFRRSKRENPPSESN 97
           +GEE PEKTL+ELYEP+VH RPIG+VI    TNFHLRS+LISNL IFR S  E+P     
Sbjct: 1   MGEEAPEKTLRELYEPDVHHRPIGIVILSITTNFHLRSNLISNLSIFRGSNGEDPHKHLR 60

Query: 98  GF 100
            F
Sbjct: 61  DF 62

[Close]

BLAST of PI0014449 vs. ExPASy TrEMBL
Match: A0A5D3BDU3 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00490 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 94  SESNGFKRFEKGLQREICTPEIAIAMWTDFSQLVEIALRVEKKLGEEKSKVKPSQVVPLA 153
           SES+ ++RFE+GL+ EI TP  AIA WT+FSQLV+IALRVE+ + EEKS V+ S+    A
Sbjct: 133 SESDRYRRFERGLRFEIRTPVTAIAKWTNFSQLVKIALRVEQSITEEKSAVELSRGTSTA 192

Query: 154 DGFR 158
            GFR
Sbjct: 193 SGFR 196

[Close]

BLAST of PI0014449 vs. ExPASy TrEMBL
Match: A0A5A7TQW1 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2741G00150 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.3e-09
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 94  SESNGFKRFEKGLQREICTPEIAIAMWTDFSQLVEIALRVEKKLGEEKSKVKPSQVVPLA 153
           SESN  +RFE+GL+ EI TP  AIA WT+FSQLVE ALRVE+ + +EKS V+ S+    A
Sbjct: 192 SESNRCQRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITQEKSAVELSRGTSTA 251

Query: 154 DGFR 158
            GFR
Sbjct: 252 SGFR 255

[Close]

BLAST of PI0014449 vs. ExPASy TrEMBL
Match: A0A5D3CU23 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00050 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.3e-09
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 94  SESNGFKRFEKGLQREICTPEIAIAMWTDFSQLVEIALRVEKKLGEEKSKVKPSQVVPLA 153
           SES+  +RFE+GL+ EICTP  AIA WT+FSQLVE ALRVE+ + EEKS ++ S+ V   
Sbjct: 285 SESDRCRRFERGLRFEICTPVTAIAKWTNFSQLVETALRVEQSIVEEKSVMELSRGVSTT 344

Query: 154 DGFR 158
            G R
Sbjct: 345 SGIR 348

[Close]

BLAST of PI0014449 vs. NCBI nr
Match: KAE8652898.1 (hypothetical protein Csa_022680 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-19
Identity = 53/77 (68.83%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 23  EPPLEPILENPLNNTVGEEVPEKTLKELYEPNVHQRPIGLVIPPTLTNFHLRSDLISNLP 82
           E PLEP  EN LNN +GEE PEKTL+ELYEP+VHQRPIG VIPPT TNFHLRS+LI NLP
Sbjct: 47  EEPLEPSFENNLNNLMGEEAPEKTLRELYEPDVHQRPIGKVIPPTTTNFHLRSNLILNLP 106

Query: 83  IFRRSKRENPPSESNGF 100
           I R S  E+P      F
Sbjct: 107 IIRGSNGEDPHKHLRDF 123

[Close]

BLAST of PI0014449 vs. NCBI nr
Match: TYJ97684.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-17
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 25  PLEPILENPLNNTVGEEVPEKTLKELYEPNVHQRPIGLVIPPTLTNFHLRSDLISNLPIF 84
           P E  LEN LNN + EE PE+TL+ELYE ++HQRPI +VIPPT TNFHLRS+LISNLPIF
Sbjct: 8   PSEASLENNLNNPMEEETPERTLRELYELDIHQRPISIVIPPTTTNFHLRSNLISNLPIF 67

Query: 85  RRSKRENPPSESNGF 100
           RRS  E+P      F
Sbjct: 68  RRSNGEDPHKHLKDF 82

[Close]

BLAST of PI0014449 vs. NCBI nr
Match: KAE8647060.1 (hypothetical protein Csa_022980 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-13
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 23  EPPLEPILENPLNNTVGEEVPEKTLKELYEPNVHQRPIGLVIPPTLTNFHLRSDLISNLP 82
           E PLEP LEN LN+ +GEE PEKTL++LYEP++HQRPIG+VIPPT TNFHLR      LP
Sbjct: 47  EEPLEPSLENNLNDLMGEEAPEKTLRKLYEPDIHQRPIGIVIPPTTTNFHLR------LP 106

Query: 83  IFRRSKRE 91
             + S+R+
Sbjct: 107 YNQLSERD 108

[Close]

BLAST of PI0014449 vs. NCBI nr
Match: KAA0062777.1 (Peptidase A1 [Cucumis melo var. makuwa] >TYK08851.1 Peptidase A1 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 8.2e-12
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 38  VGEEVPEKTLKELYEPNVHQRPIGLVIPPTLTNFHLRSDLISNLPIFRRSKRENPPSESN 97
           +GEE PEKTL+ELYEP+VH RPIG+VI    TNFHLRS+LISNL IFR S  E+P     
Sbjct: 1   MGEEAPEKTLRELYEPDVHHRPIGIVILSITTNFHLRSNLISNLSIFRGSNGEDPHKHLR 60

Query: 98  GF 100
            F
Sbjct: 61  DF 62

[Close]

BLAST of PI0014449 vs. NCBI nr
Match: KAA0037886.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYJ98020.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-09
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 94  SESNGFKRFEKGLQREICTPEIAIAMWTDFSQLVEIALRVEKKLGEEKSKVKPSQVVPLA 153
           SES+ ++RFE+GL+ EI TP  AIA WT+FSQLV+IALRVE+ + EEKS V+ S+    A
Sbjct: 133 SESDRYRRFERGLRFEIRTPVTAIAKWTNFSQLVKIALRVEQSITEEKSAVELSRGTSTA 192

Query: 154 DGFR 158
            GFR
Sbjct: 193 SGFR 196

The following BLAST results are available for this feature:

BLAST of PI0014449 vs.


Match Name	E-value	Identity	Description

BLAST of PI0014449 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BF34	8.2e-18	65.33	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00570 PE=4 ...	[more]
A0A5A7V727	4.0e-12	64.52	Peptidase A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00400 PE...	[more]
A0A5D3BDU3	1.4e-09	59.38	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7TQW1	5.3e-09	59.38	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3CU23	5.3e-09	57.81	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of PI0014449 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652898.1	1.4e-19	68.83	hypothetical protein Csa_022680 [Cucumis sativus]	[more]
TYJ97684.1	1.7e-17	65.33	integrase [Cucumis melo var. makuwa]	[more]
KAE8647060.1	1.9e-13	63.24	hypothetical protein Csa_022980 [Cucumis sativus]	[more]
KAA0062777.1	8.2e-12	64.52	Peptidase A1 [Cucumis melo var. makuwa] >TYK08851.1 Peptidase A1 [Cucumis melo v...	[more]
KAA0037886.1	2.9e-09	59.38	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYJ98020.1 Gag...	[more]

BLAST of PI0014449 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014449.1	PI0014449.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity