Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTTCCTTTCGAGCCCCCAAACACATCTGGACGAAGGAGGAAGAGTCGTACCTGGTCAAGGTCTTGGTGGAGTTGGTATCCGTCCGCGGCTGGAAGTCAGACAATAGTACCTTCTGTCCTAGGTACCTGGCTCAGCTACAGAGAATGCTGGCGGAGAAGATGCCTGGATGTAATATCCAAGGTTCGTCGACAATTCGGATAAAAAACATGAAGAAAACATTCCATGTCATTGCAGAAATGCACAGGTCATCGTGTAGTGGGTTCGGTTGGAACGATGAAGTGAAGTGCATCATCGCTGAGAAAGAGTTGTTCGACAATTGGGTTAAGGTAAGTTATTCATTATGAAAATACGATGTTCGTTTATAATAAAAAAACTGACAATTTATTTAAAAACTTGAACAGAGTTATCCTGCTGTGAAGGGCCTCCTAAACAAGCCATTTTCCCATTATGACGACCTGTGCTATGTATTTGGGAAGGATTGTGCGACGAGAGCTCGCGCAGAGACATTCGCCAATGTTGGGTCGAATGTGCCTGGAGGGTTCGAGGGATTTTTCGCTGATTATGGAAACGATACGGAGATCCCTACGATGTACAATCAGGGACTAGACATGTCGCCCGATGACATGGCGGGCTCACGTCCCGGTCGCTCGATGGAGGGTAGGACTGGTTCAAGCGGATGGAAGTGGAAGCGAGGAGGCCAGGCAGCACAGACTGTGGAGATCATTCAAAATGTGATGGACTTCACCAACGACCAGTTGAAGGCCATTGCAAAGTGGCCGAATTTACAACGTCAAGATGAAGTCACCGCTCGTGACGAAGTTGTTAACCAGCGGTAG
mRNA sequence
ATGGCAAGTTCCTTTCGAGCCCCCAAACACATCTGGACGAAGGAGGAAGAGTCGTACCTGGTCAAGGTCTTGGTGGAGTTGGTATCCGTCCGCGGCTGGAAGTCAGACAATAGTACCTTCTGTCCTAGGTACCTGGCTCAGCTACAGAGAATGCTGGCGGAGAAGATGCCTGGATGTAATATCCAAGGTTCGTCGACAATTCGGATAAAAAACATGAAGAAAACATTCCATGTCATTGCAGAAATGCACAGGTCATCGTGTAGTGGGTTCGGTTGGAACGATGAAGTGAAGTGCATCATCGCTGAGAAAGAGTTGTTCGACAATTGGGTTAAGAGTTATCCTGCTGTGAAGGGCCTCCTAAACAAGCCATTTTCCCATTATGACGACCTGTGCTATGTATTTGGGAAGGATTGTGCGACGAGAGCTCGCGCAGAGACATTCGCCAATGTTGGGTCGAATGTGCCTGGAGGGTTCGAGGGATTTTTCGCTGATTATGGAAACGATACGGAGATCCCTACGATGTACAATCAGGGACTAGACATGTCGCCCGATGACATGGCGGGCTCACGTCCCGGTCGCTCGATGGAGGGTAGGACTGGTTCAAGCGGATGGAAGTGGAAGCGAGGAGGCCAGGCAGCACAGACTGTGGAGATCATTCAAAATGTGATGGACTTCACCAACGACCAGTTGAAGGCCATTGCAAAGTGGCCGAATTTACAACGTCAAGATGAAGTCACCGCTCGTGACGAAGTTGTTAACCAGCGGTAG
Coding sequence (CDS)
ATGGCAAGTTCCTTTCGAGCCCCCAAACACATCTGGACGAAGGAGGAAGAGTCGTACCTGGTCAAGGTCTTGGTGGAGTTGGTATCCGTCCGCGGCTGGAAGTCAGACAATAGTACCTTCTGTCCTAGGTACCTGGCTCAGCTACAGAGAATGCTGGCGGAGAAGATGCCTGGATGTAATATCCAAGGTTCGTCGACAATTCGGATAAAAAACATGAAGAAAACATTCCATGTCATTGCAGAAATGCACAGGTCATCGTGTAGTGGGTTCGGTTGGAACGATGAAGTGAAGTGCATCATCGCTGAGAAAGAGTTGTTCGACAATTGGGTTAAGAGTTATCCTGCTGTGAAGGGCCTCCTAAACAAGCCATTTTCCCATTATGACGACCTGTGCTATGTATTTGGGAAGGATTGTGCGACGAGAGCTCGCGCAGAGACATTCGCCAATGTTGGGTCGAATGTGCCTGGAGGGTTCGAGGGATTTTTCGCTGATTATGGAAACGATACGGAGATCCCTACGATGTACAATCAGGGACTAGACATGTCGCCCGATGACATGGCGGGCTCACGTCCCGGTCGCTCGATGGAGGGTAGGACTGGTTCAAGCGGATGGAAGTGGAAGCGAGGAGGCCAGGCAGCACAGACTGTGGAGATCATTCAAAATGTGATGGACTTCACCAACGACCAGTTGAAGGCCATTGCAAAGTGGCCGAATTTACAACGTCAAGATGAAGTCACCGCTCGTGACGAAGTTGTTAACCAGCGGTAG
Protein sequence
MASSFRAPKHIWTKEEESYLVKVLVELVSVRGWKSDNSTFCPRYLAQLQRMLAEKMPGCNIQGSSTIRIKNMKKTFHVIAEMHRSSCSGFGWNDEVKCIIAEKELFDNWVKSYPAVKGLLNKPFSHYDDLCYVFGKDCATRARAETFANVGSNVPGGFEGFFADYGNDTEIPTMYNQGLDMSPDDMAGSRPGRSMEGRTGSSGWKWKRGGQAAQTVEIIQNVMDFTNDQLKAIAKWPNLQRQDEVTARDEVVNQR
Homology
BLAST of PI0014401 vs. ExPASy TrEMBL
Match:
A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)
HSP 1 Score: 308.9 bits (790), Expect = 2.0e-80
Identity = 157/257 (61.09%), Postives = 191/257 (74.32%), Query Frame = 0
Query: 1 MASSFRAPKHIWTKEEESYLVKVLVELVSVRGWKSDNSTFCPRYLAQLQRMLAEKMPGCN 60
MAS RAPKH WTKEEE V+ LVELVS GW+SDN TF P YLAQLQRM+AEK+PG N
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 IQGSSTI--RIKNMKKTFHVIAEMHRSSCSGFGWNDEVKCIIAEKELFDNWVKSYPAVKG 120
IQ SSTI +K++KKT+H IAEM SCSGFGWN+E +CIIAE++LFD+W+KS+PA KG
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 LLNKPFSHYDDLCYVFGKDCATRARAETFANVGSNVPGGFEGFF-ADYGNDTEIPTMYNQ 180
LL+K F +YDDL YVFGKD AT AR+ETF NVGSNV F +D +IPTMY+Q
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 GLDMSPDDMAGSRPGRSMEGRTGSSGWKWKRGGQAAQTVEIIQNVMDFTNDQLKAIAKWP 240
G+ MSPD+M G R G++ E R SS K KRG + +TVE+I++VM+F N+QLKAIA WP
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240
Query: 241 NLQRQDEVTARDEVVNQ 255
+R EV R +VV Q
Sbjct: 241 KEKRAMEVEMRAQVVKQ 257
BLAST of PI0014401 vs. ExPASy TrEMBL
Match:
A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)
HSP 1 Score: 308.9 bits (790), Expect = 2.0e-80
Identity = 157/257 (61.09%), Postives = 191/257 (74.32%), Query Frame = 0
Query: 1 MASSFRAPKHIWTKEEESYLVKVLVELVSVRGWKSDNSTFCPRYLAQLQRMLAEKMPGCN 60
MAS RAPKH WTKEEE V+ LVELVS GW+SDN TF P YLAQLQRM+AEK+PG N
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 IQGSSTI--RIKNMKKTFHVIAEMHRSSCSGFGWNDEVKCIIAEKELFDNWVKSYPAVKG 120
IQ SSTI +K++KKT+H IAEM SCSGFGWN+E +CIIAE++LFD+W+KS+PA KG
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 LLNKPFSHYDDLCYVFGKDCATRARAETFANVGSNVPGGFEGFF-ADYGNDTEIPTMYNQ 180
LL+K F +YDDL YVFGKD AT AR+ETF NVGSNV F +D +IPTMY+Q
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 GLDMSPDDMAGSRPGRSMEGRTGSSGWKWKRGGQAAQTVEIIQNVMDFTNDQLKAIAKWP 240
G+ MSPD+M G R G++ E R SS K KRG + +TVE+I++VM+F N+QLKAIA WP
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240
Query: 241 NLQRQDEVTARDEVVNQ 255
+R EV R +VV Q
Sbjct: 241 KEKRAMEVEMRAQVVKQ 257
BLAST of PI0014401 vs. ExPASy TrEMBL
Match:
A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)
HSP 1 Score: 301.6 bits (771), Expect = 3.1e-78
Identity = 149/255 (58.43%), Postives = 183/255 (71.76%), Query Frame = 0
Query: 1 MASSFRAPKHIWTKEEESYLVKVLVELVSVRGWKSDNSTFCPRYLAQLQRMLAEKMPGCN 60
MASS R PKH WTKEEE+ LV+ LVELV+ GW+SDN TF P YL QL RM+A K+PGCN
Sbjct: 1 MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60
Query: 61 IQGSS-TIRIKNMKKTFHVIAEMHRSSCSGFGWNDEVKCIIAEKELFDNWVKSYPAVKGL 120
I S+ RIK MK+ FH +AEM +CSGFGWNDE KCI+ EKELFD+WVKS+PA KGL
Sbjct: 61 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGL 120
Query: 121 LNKPFSHYDDLCYVFGKDCATRARAETFANVGSNVPGGFEGFFADYGNDTEIPTMYNQGL 180
LNK F HYD+L YVFGKD AT RAE+FA++GSN P G++ AD DT+ P MY+ GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180
Query: 181 DMSPDDMAGSRPGRSMEGRTGSSGWKWKRGGQAAQTVEIIQNVMDFTNDQLKAIAKWPNL 240
+MSPDD+ +R R E R SSG K KR G A + +I++ +++ N+QL IA+WP L
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240
Query: 241 QRQDEVTARDEVVNQ 255
QRQD R E+V Q
Sbjct: 241 QRQDASQTRQEIVRQ 255
BLAST of PI0014401 vs. ExPASy TrEMBL
Match:
A0A5D3DBP2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00100 PE=4 SV=1)
HSP 1 Score: 299.7 bits (766), Expect = 1.2e-77
Identity = 149/250 (59.60%), Postives = 189/250 (75.60%), Query Frame = 0
Query: 1 MASSFRAPKHIWTKEEESYLVKVLVELVSVRGWKSDNSTFCPRYLAQLQRMLAEKMPGCN 60
M++S RAP+H+WTKEEE LV+ L+ELVS+ GWKSDN TF P YLAQL R++AEK+PGC
Sbjct: 1 MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRIMAEKLPGCQ 60
Query: 61 IQGSSTI--RIKNMKKTFHVIAEMHRSSCSGFGWNDEVKCIIAEKELFDNWVKSYPAVKG 120
++ ++ I RIK +K+TF IAEM +CSGFGWNDE KCI+AEKELFDNWV+S+PA KG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 121 LLNKPFSHYDDLCYVFGKDCATRARAETFANVGSNVP-GGFEGFFADYGNDTEIPTMYNQ 180
LLNKPFS+YD+L YVFG+D AT AETFA+VGSN P GG++ F GN+ +P +Y+Q
Sbjct: 121 LLNKPFSYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFLP-VYSQ 180
Query: 181 GLDMSPDDMAGSRPGRSMEGRTGSSGWKWKRGGQAAQTVEIIQNVMDFTNDQLKAIAKWP 240
G+D+S DD+ SRP R+ EGRTGSSG K KRG Q +E I +D TN+QL+ IA+WP
Sbjct: 181 GIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWP 240
Query: 241 --NLQRQDEV 246
NL + V
Sbjct: 241 ARNLANDNHV 249
BLAST of PI0014401 vs. ExPASy TrEMBL
Match:
A0A5A7VHM3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00480 PE=4 SV=1)
HSP 1 Score: 299.7 bits (766), Expect = 1.2e-77
Identity = 146/240 (60.83%), Postives = 185/240 (77.08%), Query Frame = 0
Query: 1 MASSFRAPKHIWTKEEESYLVKVLVELVSVRGWKSDNSTFCPRYLAQLQRMLAEKMPGCN 60
M++S RAP+H+WT+EEE +V+ L+ELVS+ GWKSDN TF P YLAQL RM+AEK+PGC
Sbjct: 1 MSTSNRAPRHVWTREEEGTIVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 IQGSSTI--RIKNMKKTFHVIAEMHRSSCSGFGWNDEVKCIIAEKELFDNWVKSYPAVKG 120
++ ++ I RIK +K+TF IAEM +CSGFGWNDE KCI+AEKELFDNWV+S+PA K
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKE 120
Query: 121 LLNKPFSHYDDLCYVFGKDCATRARAETFANVGSNVP-GGFEGFFADYGNDTEIPTMYNQ 180
LLNKPFS+YD+L YVFG+D AT AETFA+VGSN P GG++ F GN+ + P +Y+Q
Sbjct: 121 LLNKPFSYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSQ 180
Query: 181 GLDMSPDDMAGSRPGRSMEGRTGSSGWKWKRGGQAAQTVEIIQNVMDFTNDQLKAIAKWP 238
G+D+S DD+ SRP R+ EGRTGSSG K KRG Q VE I V+D TN+QL+ IA+WP
Sbjct: 181 GVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIYLVLDQTNEQLRQIAEWP 239
BLAST of PI0014401 vs. NCBI nr
Match:
XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 308.9 bits (790), Expect = 4.0e-80
Identity = 157/257 (61.09%), Postives = 191/257 (74.32%), Query Frame = 0
Query: 1 MASSFRAPKHIWTKEEESYLVKVLVELVSVRGWKSDNSTFCPRYLAQLQRMLAEKMPGCN 60
MAS RAPKH WTKEEE V+ LVELVS GW+SDN TF P YLAQLQRM+AEK+PG N
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 IQGSSTI--RIKNMKKTFHVIAEMHRSSCSGFGWNDEVKCIIAEKELFDNWVKSYPAVKG 120
IQ SSTI +K++KKT+H IAEM SCSGFGWN+E +CIIAE++LFD+W+KS+PA KG
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 LLNKPFSHYDDLCYVFGKDCATRARAETFANVGSNVPGGFEGFF-ADYGNDTEIPTMYNQ 180
LL+K F +YDDL YVFGKD AT AR+ETF NVGSNV F +D +IPTMY+Q
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 GLDMSPDDMAGSRPGRSMEGRTGSSGWKWKRGGQAAQTVEIIQNVMDFTNDQLKAIAKWP 240
G+ MSPD+M G R G++ E R SS K KRG + +TVE+I++VM+F N+QLKAIA WP
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240
Query: 241 NLQRQDEVTARDEVVNQ 255
+R EV R +VV Q
Sbjct: 241 KEKRAMEVEMRAQVVKQ 257
BLAST of PI0014401 vs. NCBI nr
Match:
TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 301.6 bits (771), Expect = 6.4e-78
Identity = 149/255 (58.43%), Postives = 183/255 (71.76%), Query Frame = 0
Query: 1 MASSFRAPKHIWTKEEESYLVKVLVELVSVRGWKSDNSTFCPRYLAQLQRMLAEKMPGCN 60
MASS R PKH WTKEEE+ LV+ LVELV+ GW+SDN TF P YL QL RM+A K+PGCN
Sbjct: 1 MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60
Query: 61 IQGSS-TIRIKNMKKTFHVIAEMHRSSCSGFGWNDEVKCIIAEKELFDNWVKSYPAVKGL 120
I S+ RIK MK+ FH +AEM +CSGFGWNDE KCI+ EKELFD+WVKS+PA KGL
Sbjct: 61 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGL 120
Query: 121 LNKPFSHYDDLCYVFGKDCATRARAETFANVGSNVPGGFEGFFADYGNDTEIPTMYNQGL 180
LNK F HYD+L YVFGKD AT RAE+FA++GSN P G++ AD DT+ P MY+ GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180
Query: 181 DMSPDDMAGSRPGRSMEGRTGSSGWKWKRGGQAAQTVEIIQNVMDFTNDQLKAIAKWPNL 240
+MSPDD+ +R R E R SSG K KR G A + +I++ +++ N+QL IA+WP L
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240
Query: 241 QRQDEVTARDEVVNQ 255
QRQD R E+V Q
Sbjct: 241 QRQDASQTRQEIVRQ 255
BLAST of PI0014401 vs. NCBI nr
Match:
KAA0067583.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 299.7 bits (766), Expect = 2.4e-77
Identity = 146/240 (60.83%), Postives = 185/240 (77.08%), Query Frame = 0
Query: 1 MASSFRAPKHIWTKEEESYLVKVLVELVSVRGWKSDNSTFCPRYLAQLQRMLAEKMPGCN 60
M++S RAP+H+WT+EEE +V+ L+ELVS+ GWKSDN TF P YLAQL RM+AEK+PGC
Sbjct: 1 MSTSNRAPRHVWTREEEGTIVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 IQGSSTI--RIKNMKKTFHVIAEMHRSSCSGFGWNDEVKCIIAEKELFDNWVKSYPAVKG 120
++ ++ I RIK +K+TF IAEM +CSGFGWNDE KCI+AEKELFDNWV+S+PA K
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKE 120
Query: 121 LLNKPFSHYDDLCYVFGKDCATRARAETFANVGSNVP-GGFEGFFADYGNDTEIPTMYNQ 180
LLNKPFS+YD+L YVFG+D AT AETFA+VGSN P GG++ F GN+ + P +Y+Q
Sbjct: 121 LLNKPFSYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSQ 180
Query: 181 GLDMSPDDMAGSRPGRSMEGRTGSSGWKWKRGGQAAQTVEIIQNVMDFTNDQLKAIAKWP 238
G+D+S DD+ SRP R+ EGRTGSSG K KRG Q VE I V+D TN+QL+ IA+WP
Sbjct: 181 GVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIYLVLDQTNEQLRQIAEWP 239
BLAST of PI0014401 vs. NCBI nr
Match:
TYK20986.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 299.7 bits (766), Expect = 2.4e-77
Identity = 149/250 (59.60%), Postives = 189/250 (75.60%), Query Frame = 0
Query: 1 MASSFRAPKHIWTKEEESYLVKVLVELVSVRGWKSDNSTFCPRYLAQLQRMLAEKMPGCN 60
M++S RAP+H+WTKEEE LV+ L+ELVS+ GWKSDN TF P YLAQL R++AEK+PGC
Sbjct: 1 MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRIMAEKLPGCQ 60
Query: 61 IQGSSTI--RIKNMKKTFHVIAEMHRSSCSGFGWNDEVKCIIAEKELFDNWVKSYPAVKG 120
++ ++ I RIK +K+TF IAEM +CSGFGWNDE KCI+AEKELFDNWV+S+PA KG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 121 LLNKPFSHYDDLCYVFGKDCATRARAETFANVGSNVP-GGFEGFFADYGNDTEIPTMYNQ 180
LLNKPFS+YD+L YVFG+D AT AETFA+VGSN P GG++ F GN+ +P +Y+Q
Sbjct: 121 LLNKPFSYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFLP-VYSQ 180
Query: 181 GLDMSPDDMAGSRPGRSMEGRTGSSGWKWKRGGQAAQTVEIIQNVMDFTNDQLKAIAKWP 240
G+D+S DD+ SRP R+ EGRTGSSG K KRG Q +E I +D TN+QL+ IA+WP
Sbjct: 181 GIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWP 240
Query: 241 --NLQRQDEV 246
NL + V
Sbjct: 241 ARNLANDNHV 249
BLAST of PI0014401 vs. NCBI nr
Match:
KAA0062964.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 299.3 bits (765), Expect = 3.2e-77
Identity = 149/250 (59.60%), Postives = 189/250 (75.60%), Query Frame = 0
Query: 1 MASSFRAPKHIWTKEEESYLVKVLVELVSVRGWKSDNSTFCPRYLAQLQRMLAEKMPGCN 60
M++S RAP+H+WT+EEE LV+ L+ELVS+ GWKSDN TF P YLAQL RM+AEK+PGC
Sbjct: 1 MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 IQGSSTI--RIKNMKKTFHVIAEMHRSSCSGFGWNDEVKCIIAEKELFDNWVKSYPAVKG 120
++ ++ I RIK +K+TF IAEM +CSGFGWNDE KCI+AEKELFDNWV+S+PAVKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAVKG 120
Query: 121 LLNKPFSHYDDLCYVFGKDCATRARAETFANVGSNVP-GGFEGFFADYGNDTEIPTMYNQ 180
LLNKPF +YD+L YVFG D AT AETFA+VGSN P GG++ F GN+ + P++Y+Q
Sbjct: 121 LLNKPFPYYDELTYVFGCDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPSVYSQ 180
Query: 181 GLDMSPDDMAGSRPGRSMEGRTGSSGWKWKRGGQAAQTVEIIQNVMDFTNDQLKAIAKWP 240
G+D+S DD+ SRP R+ EGRTGSSG K KRG Q +E I +D TN+QL+ IA+WP
Sbjct: 181 GVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWP 240
Query: 241 --NLQRQDEV 246
NL + V
Sbjct: 241 ARNLANDNHV 249
BLAST of PI0014401 vs. TAIR 10
Match:
AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )
HSP 1 Score: 48.9 bits (115), Expect = 7.0e-06
Identity = 18/68 (26.47%), Postives = 41/68 (60.29%), Query Frame = 0
Query: 68 RIKNMKKTFHVIAEMHRSSCSGFGWNDEVKCIIAEKELFDNWVKSYPAVKGLLNKPFSHY 127
R K++++ F+ I + RS GF W++E + + A+ ++ +++K++ + + +P +Y
Sbjct: 240 RYKSLRRQFNAIKSILRS--DGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYY 299
Query: 128 DDLCYVFG 136
DLC + G
Sbjct: 300 KDLCVLCG 305
BLAST of PI0014401 vs. TAIR 10
Match:
AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )
HSP 1 Score: 48.9 bits (115), Expect = 7.0e-06
Identity = 18/68 (26.47%), Postives = 41/68 (60.29%), Query Frame = 0
Query: 68 RIKNMKKTFHVIAEMHRSSCSGFGWNDEVKCIIAEKELFDNWVKSYPAVKGLLNKPFSHY 127
R K++++ F+ I + RS GF W++E + + A+ ++ +++K++ + + +P +Y
Sbjct: 240 RYKSLRRQFNAIKSILRS--DGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYY 299
Query: 128 DDLCYVFG 136
DLC + G
Sbjct: 300 KDLCVLCG 305
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U0H7 | 2.0e-80 | 61.09 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3B4L3 | 2.0e-80 | 61.09 | uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... | [more] |
A0A5D3C1M0 | 3.1e-78 | 58.43 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3DBP2 | 1.2e-77 | 59.60 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VHM3 | 1.2e-77 | 60.83 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
XP_008441954.1 | 4.0e-80 | 61.09 | PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... | [more] |
TYK05082.1 | 6.4e-78 | 58.43 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0067583.1 | 2.4e-77 | 60.83 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK20986.1 | 2.4e-77 | 59.60 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0062964.1 | 3.2e-77 | 59.60 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
AT4G02210.1 | 7.0e-06 | 26.47 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
AT4G02210.2 | 7.0e-06 | 26.47 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |