PI0014372 (gene) Melon (PI 482460) v1

Overview


Name	PI0014372
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Multifunctional methyltransferase subunit TRM112-like protein
Location	chr03: 2488503 .. 2490085 (-)
RNA-Seq Expression	PI0014372
Synteny	PI0014372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACAAAGCTTCGGTTTTATCAGAATAAGCCGCCAGGCTTCCCATCTTCCATTCTTCTCCGTGAGCGCCAGCGGCAACGACCACACACTCTCTCTTCATCTTCGCCAGCAGCCTCCACACCACGCCGCCAACTTTCCTCCACCGTACGTCACGGTAAAGCGCCGCCCTCTCTCTTTTCTTGCATCTCTCTCTATCAGCCTTCTCATGTTGTTCTCTCCAGGTCGCAACCACGGTGCACAACTGCCATTTAAGCCGTCGCCGCCGTTTGTCGTCAGAAGCGTCTGCCAGCATTGTTTGAGGTGAATTTTCGGCACTATTTTGTGGGTATTTTCAGTGTGATCTTGATTTTCGTGGCTTGGTTTGGCTTAAAATAAATTACCTTTCGAGTAGGTTAGGGGTTTGGCGGGACTATAACTGCCGTCTAATCCGTTAAAATCTTGTTGTAGTTGCTGGAACTTGGGTTTATGAACCTATAATTACCAATTTTTTGCTTAGGTCTAGTTATATTCTATGGAATCAGGAGTTTTGGATCAAAGGATTTTTTGGATAAGTGTTTCCGAGTCTTGAGGCATTGGGTTAAATGGTCAAGGATCAATGTTCCAAGGAAGGCAATAGAATATCATGGATTTGGGTTAAATGGTTGAGGATTGGTATTGATTTAAGGCTATTAAGTTAATAATTGGGTGTCAAGGCGGCGTTGATATGGCAATTTTAGATAAAGAGGAGAGTTGAGAAAGAGAAACTATTAGCTAGTTGTTTTTTTTGGAAGGTCTCGTCATTAGATGAATTTAATTGTGAACTTCTTGAGGTCATTTGTTCTTTCTTGGATGTATGTTTGTATCTTTAAGTTCATTGAGCATTGGGTAACATGTTTAGACTTAGCATGTGGGTCATCAAACTTGCTAAGTAATTGAGTCTTCTTGGAAGACTACTAAAATCTTTGGGCTATTCTTTGAATTTAGCAATACTTATTTAATCCTTCTTTTGGTTTGACTTTAAAATACTCTTTTAAATTGGGTTGTAATTTAAGCTTGACCTTTATTTAGTTATATCGTCTTGGTTCTTTATATTTTAGGTCGTGATCTTGGATATATGTTTACAATTACAGGTTGATTAAACTTCTATCTTATAGAAGTCCTTAATAGGAACCTAGAATTGTTGTTTAACAGGTGTTAAGTAAATGGGTATTTTTGTAGCATACCCCAAGCCGAAATTTGGGTGTGTTACATTAAAAATATGGTCCCCATTTTCGCTTTTGTCACTGTCGCACTGTTCTAGATCGTAATTTTGTCCAACATTCTAATAGATTGTTAATAGTTTTGAAAGATTGTGGGTCTGGAGTTCTTGAAATTATAGACCCATCTTTTAAACAAAAGGCAAAGTTCAAGAGTTATTCTTTTGTAACCAAATCCGATCATGTGTATACACATACACAATTAAATGTAAAAATAACAAGCGAACCTAGTACCTTTAACTTTTCCTATAAAGCCCTAGGCAGCTCTTAGAAACGGGAATTTGGTTTTTGGTATTGACTCTCTTATGGTGCTGTGACACTGAATACTTATTACCTAGCAGGTAA

mRNA sequence

ATGAAAACAAAGCTTCGGTTTTATCAGAATAAGCCGCCAGGCTTCCCATCTTCCATTCTTCTCCGTGAGCGCCAGCGGCAACGACCACACACTCTCTCTTCATCTTCGCCAGCAGCCTCCACACCACGCCGCCAACTTTCCTCCACCGTACGTCACGGTCGCAACCACGGTGCACAACTGCCATTTAAGCCGTCGCCGCCGTTTGTCGTCAGAAGCGTCTGCCAGCATTGTTTGAGGTAA

Coding sequence (CDS)

ATGAAAACAAAGCTTCGGTTTTATCAGAATAAGCCGCCAGGCTTCCCATCTTCCATTCTTCTCCGTGAGCGCCAGCGGCAACGACCACACACTCTCTCTTCATCTTCGCCAGCAGCCTCCACACCACGCCGCCAACTTTCCTCCACCGTACGTCACGGTCGCAACCACGGTGCACAACTGCCATTTAAGCCGTCGCCGCCGTTTGTCGTCAGAAGCGTCTGCCAGCATTGTTTGAGGTAA

Protein sequence

MKTKLRFYQNKPPGFPSSILLRERQRQRPHTLSSSSPAASTPRRQLSSTVRHGRNHGAQLPFKPSPPFVVRSVCQHCLR

Homology

[Close]

BLAST of PI0014372 vs. ExPASy TrEMBL
Match: A0A5A7VD78 (Multifunctional methyltransferase subunit TRM112-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004860 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-05
Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 53 GRNHGAQLPFKPSPPFVVRSVCQHCLR 80
          GR+HGAQ PF+PSPPFVVR+VCQHCLR
Sbjct: 6  GRDHGAQPPFRPSPPFVVRTVCQHCLR 32

[Close]

BLAST of PI0014372 vs. NCBI nr
Match: KAA0065150.1 (multifunctional methyltransferase subunit TRM112-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-05
Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 53 GRNHGAQLPFKPSPPFVVRSVCQHCLR 80
          GR+HGAQ PF+PSPPFVVR+VCQHCLR
Sbjct: 6  GRDHGAQPPFRPSPPFVVRTVCQHCLR 32

The following BLAST results are available for this feature:

BLAST of PI0014372 vs.


Match Name	E-value	Identity	Description

BLAST of PI0014372 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VD78	2.4e-05	85.19	Multifunctional methyltransferase subunit TRM112-like protein OS=Cucumis melo va...	[more]

BLAST of PI0014372 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065150.1	5.0e-05	85.19	multifunctional methyltransferase subunit TRM112-like protein [Cucumis melo var....	[more]

BLAST of PI0014372 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014372.1	PI0014372.1	mRNA