PI0014235 (gene) Melon (PI 482460) v1

Overview


Name	PI0014235
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	RING-type E3 ubiquitin transferase
Location	chr09: 18200053 .. 18200580 (+)
RNA-Seq Expression	PI0014235
Synteny	PI0014235

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGCAGTACCGACGACGCCACCATTTACAGCCGAAAACTCGACATTTTCCTCATCGCCATCGGCTCCGCCGGCGCCGTCGTCACCATTTACCACTGCATCATGGCTTGTTGGTGCGATCGCCGCCGCTTCAGCGCCGGTGACCAATCGCCGGCGAACGACCCTCACTCCTTACCGATAACGGATACGCCGCGGAGCACCGAGAATTCGGTGGTTCATTTGATTCCGGCTCACAAGTATGAGAAACGAATGGCGGTGGACGGCGGCAGTGGCATTAAAGACGTCGATGGGGATGGCACGTGCGCGATTTGTTTGAGTGAATTTGAAGAAGGGGAGGAAATAAAGACGTTGCCTGAGTGTATGCATTCGTATCACATGCCGTGTATCGACATGTGGCTTTACTCTCACTCGAGCTGTCCAATGTGTCGTACTAATGCTACTCCGACGTCGTTTCATGATAGGCTGCAGTTTGAAACGCAGCCCAATTCTGGGATTGTTGTGCACGTGCTTCCCACGAGGGGCTGA

mRNA sequence

ATGTCAAGCAGTACCGACGACGCCACCATTTACAGCCGAAAACTCGACATTTTCCTCATCGCCATCGGCTCCGCCGGCGCCGTCGTCACCATTTACCACTGCATCATGGCTTGTTGGTGCGATCGCCGCCGCTTCAGCGCCGGTGACCAATCGCCGGCGAACGACCCTCACTCCTTACCGATAACGGATACGCCGCGGAGCACCGAGAATTCGGTGGTTCATTTGATTCCGGCTCACAAGTATGAGAAACGAATGGCGGTGGACGGCGGCAGTGGCATTAAAGACGTCGATGGGGATGGCACGTGCGCGATTTGTTTGAGTGAATTTGAAGAAGGGGAGGAAATAAAGACGTTGCCTGAGTGTATGCATTCGTATCACATGCCGTGTATCGACATGTGGCTTTACTCTCACTCGAGCTGTCCAATGTGTCGTACTAATGCTACTCCGACGTCGTTTCATGATAGGCTGCAGTTTGAAACGCAGCCCAATTCTGGGATTGTTGTGCACGTGCTTCCCACGAGGGGCTGA

Coding sequence (CDS)

ATGTCAAGCAGTACCGACGACGCCACCATTTACAGCCGAAAACTCGACATTTTCCTCATCGCCATCGGCTCCGCCGGCGCCGTCGTCACCATTTACCACTGCATCATGGCTTGTTGGTGCGATCGCCGCCGCTTCAGCGCCGGTGACCAATCGCCGGCGAACGACCCTCACTCCTTACCGATAACGGATACGCCGCGGAGCACCGAGAATTCGGTGGTTCATTTGATTCCGGCTCACAAGTATGAGAAACGAATGGCGGTGGACGGCGGCAGTGGCATTAAAGACGTCGATGGGGATGGCACGTGCGCGATTTGTTTGAGTGAATTTGAAGAAGGGGAGGAAATAAAGACGTTGCCTGAGTGTATGCATTCGTATCACATGCCGTGTATCGACATGTGGCTTTACTCTCACTCGAGCTGTCCAATGTGTCGTACTAATGCTACTCCGACGTCGTTTCATGATAGGCTGCAGTTTGAAACGCAGCCCAATTCTGGGATTGTTGTGCACGTGCTTCCCACGAGGGGCTGA

Protein sequence

MSSSTDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFSAGDQSPANDPHSLPITDTPRSTENSVVHLIPAHKYEKRMAVDGGSGIKDVDGDGTCAICLSEFEEGEEIKTLPECMHSYHMPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPNSGIVVHVLPTRG

Homology

[Close]

BLAST of PI0014235 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-16
Identity = 49/139 (35.25%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 17  IFLIAIGSAGAVVTIYHCIMACWCDR-RRFSAGDQSPANDPHSLPITDTPRSTEN----- 76
           I LI I ++  ++  Y+ +++ +C R  + S+ +    N       + T R + N     
Sbjct: 59  IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLN 118

Query: 77  -SVVHLIPAHKYEKRMAVDGGSGIKDVDGDGTCAICLSEFEEGEEIKTLPECMHSYHMPC 136
            S++  I  +KY+        SG   VDG   C++CLSEFEE E ++ LP+C H++H+PC
Sbjct: 119 ESMIKSITVYKYK--------SGDGFVDG-SDCSVCLSEFEENESLRLLPKCNHAFHLPC 178

Query: 137 IDMWLYSHSSCPMCRTNAT 149
           ID WL SHS+CP+CR   T
Sbjct: 179 IDTWLKSHSNCPLCRAFVT 188

[Close]

BLAST of PI0014235 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-16
Identity = 44/128 (34.38%), Postives = 64/128 (50.00%), Query Frame = 0


Query: 27  AVVTIYHCIMACWCDRRRFSAGDQS---------PANDPHSLPITDTPRSTENSVVHLIP 86
           A +T+   ++ C+CD RR +    S         P     S     T    +  V+  +P
Sbjct: 49  AALTLAFVLLQCYCDERRRAVTTTSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLP 108

Query: 87  AHKYEKRMAVDGGSGIKDVDGDGT-CAICLSEFEEGEEIKTLPECMHSYHMPCIDMWLYS 145
              Y +  A       ++ D DG  CA+CL+E E+GEE + LP C H +H  C+DMWL S
Sbjct: 109 VTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS 168

[Close]

BLAST of PI0014235 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.5e-16
Identity = 53/150 (35.33%), Postives = 73/150 (48.67%), Query Frame = 0


Query: 1   MSSSTDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFSAGDQSPANDPHSLP 60
           M ++  D  +    L   LI +    AVV         W   RRF+AG  SP+ +     
Sbjct: 21  MIAAESDMVVILSALLCALICVAGLAAVV------RCAWL--RRFTAGGDSPSPN----- 80

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGSGIKDVDGDGT-CAICLSEFEEGEEIKTLP 120
                +  +   +  +P   +    A +  SG    +GD T CAICL++F +GEEI+ LP
Sbjct: 81  -----KGLKKKALQSLPRSTF---TAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLP 140

Query: 121 ECMHSYHMPCIDMWLYSHSSCPMCRTNATP 150
            C HS+H+ CID WL S SSCP CR   TP
Sbjct: 141 LCGHSFHVECIDKWLVSRSSCPSCRRILTP 149

[Close]

BLAST of PI0014235 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-15
Identity = 53/166 (31.93%), Postives = 87/166 (52.41%), Query Frame = 0


Query: 2   SSSTDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFSAGDQSPA-------- 61
           SSS+D + +      I LI I ++  ++  Y+ +++ +C RRR ++   S A        
Sbjct: 51  SSSSDFSPLL-----IALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSD 110

Query: 62  ------NDPHSLPITDTPRST---------ENSVVHLIPAHKYEKRMAVDGGSGIKDVDG 121
                 N+ ++   T+ P  T         + S++  I  +KY K   +DG     D   
Sbjct: 111 YTWQGTNNNNNNGATN-PNQTIGGGGGDGLDESLIKSITVYKYRK---MDGFVESSD--- 170

Query: 122 DGTCAICLSEFEEGEEIKTLPECMHSYHMPCIDMWLYSHSSCPMCR 145
              C++CLSEF+E E ++ LP+C H++H+PCID WL SHS+CP+CR
Sbjct: 171 ---CSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201

[Close]

BLAST of PI0014235 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.2e-15
Identity = 42/136 (30.88%), Postives = 73/136 (53.68%), Query Frame = 0


Query: 22  IGSAGAVVTIYHCIMACWCD-------RRRFSAGDQSP--ANDPHSLPITDTPRSTENSV 81
           + +A  +V+ Y  ++ C  +       RRR  + DQ+P     PH     +  R  + S 
Sbjct: 52  LATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPH-----EVNRGLDESA 111

Query: 82  VHLIPAHKYEKRMAVDGGSGIKDVDGDGTCAICLSEFEEGEEIKTLPECMHSYHMPCIDM 141
           +  IP  K++KR  V G            C++CL+EF+E E+++ +P C H +H+ CID+
Sbjct: 112 IRAIPVFKFKKRDVVAGEE--DQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDI 171

Query: 142 WLYSHSSCPMCRTNAT 149
           WL  +++CP+CRT+ +
Sbjct: 172 WLQGNANCPLCRTSVS 180

[Close]

BLAST of PI0014235 vs. ExPASy TrEMBL
Match: A0A0A0KNT5 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G512950 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.4e-92
Identity = 163/175 (93.14%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 1   MSSSTDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFSAGDQSPANDPHSLP 60
           MSSST DA IYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRF +GDQS  NDPH+LP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGSGIKDVDGDGTCAICLSEFEEGEEIKTLPE 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGG G KDVDGDGTCAICLSEFEEGEEIKTLPE
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120

Query: 121 CMHSYHMPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPNSGIVVHVLPTRG 176
           C HSYHMPCIDMWLYSHSSCPMCRTNATPTSF+DRLQFETQ NSGIVVHVLPTRG
Sbjct: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTRG 175

[Close]

BLAST of PI0014235 vs. ExPASy TrEMBL
Match: A0A5D3DI14 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00280 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.4e-92
Identity = 164/177 (92.66%), Postives = 169/177 (95.48%), Query Frame = 0


Query: 1   MSSSTDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFSAGDQSPANDPHSLP 60
           MSSST DA IYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRF++GDQS ANDPH+LP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGSG--IKDVDGDGTCAICLSEFEEGEEIKTL 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGG G   KDVDGDGTCAICLSEFEEGEEIKTL
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTL 120

Query: 121 PECMHSYHMPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPNSGIVVHVLPTRG 176
           PEC HSYHMPCIDMWLYSHSSCPMCRTNATPTSF+DRLQF+TQPNSGIVVHVLPTRG
Sbjct: 121 PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTRG 177

[Close]

BLAST of PI0014235 vs. ExPASy TrEMBL
Match: A0A1S3C9L0 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103498194 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.4e-92
Identity = 164/177 (92.66%), Postives = 169/177 (95.48%), Query Frame = 0


Query: 1   MSSSTDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFSAGDQSPANDPHSLP 60
           MSSST DA IYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRF++GDQS ANDPH+LP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGSG--IKDVDGDGTCAICLSEFEEGEEIKTL 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGG G   KDVDGDGTCAICLSEFEEGEEIKTL
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTL 120

Query: 121 PECMHSYHMPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPNSGIVVHVLPTRG 176
           PEC HSYHMPCIDMWLYSHSSCPMCRTNATPTSF+DRLQF+TQPNSGIVVHVLPTRG
Sbjct: 121 PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTRG 177

[Close]

BLAST of PI0014235 vs. ExPASy TrEMBL
Match: A0A6J1FG87 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111445137 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.5e-79
Identity = 139/171 (81.29%), Postives = 155/171 (90.64%), Query Frame = 0


Query: 4   STDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFSAGDQSPANDPHSLPITD 63
           S+ DA +YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR +AGDQ+PAND HS+ + +
Sbjct: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61

Query: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGSGIKDVDGDGTCAICLSEFEEGEEIKTLPECMH 123
           TPRSTENSVVHLIPAHKYEK+ AVD G      DGDGTCAICLSEFEEGEEI+TLPEC+H
Sbjct: 62  TPRSTENSVVHLIPAHKYEKQKAVDSGG----CDGDGTCAICLSEFEEGEEIRTLPECLH 121

Query: 124 SYHMPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPNSGIVVHVLPTR 175
           SYH+PCIDMWLYSHSSCPMCRT+ATPTS HDRLQFETQP+SGI+VHV PTR
Sbjct: 122 SYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTR 168

[Close]

BLAST of PI0014235 vs. ExPASy TrEMBL
Match: A0A6J1BX43 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111006127 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.5e-58
Identity = 124/178 (69.66%), Postives = 135/178 (75.84%), Query Frame = 0


Query: 4   STDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFS-AGDQSP-ANDPHSLPI 63
           S  +A  YS KLDIFLIA+GSAG VVTIYHCIMACWCDRRR S  G Q+P A D HSLP 
Sbjct: 7   SPSEAIAYSHKLDIFLIAVGSAGIVVTIYHCIMACWCDRRRPSGGGGQTPAARDLHSLPG 66

Query: 64  TDTPRSTENSVVHLIPAHKYEKRMAVDGGSGIKDVDGDGTCAICLSEFEEGEEIKTLPEC 123
            +TPRSTENSVVHLIPAHKYEKRM         +V GDGTCAICLSEFEEGE+++TLPEC
Sbjct: 67  LETPRSTENSVVHLIPAHKYEKRM------DHLEV-GDGTCAICLSEFEEGEDLRTLPEC 126

Query: 124 MHSYHMPCIDMWLYSHSSCPMCRTNATPTS-----FHDRLQFETQPNSGIVVHVLPTR 175
           MHSYH+PCIDMWLYSHSSCPMCR +ATPT      F D L  E    S +VVHV  TR
Sbjct: 127 MHSYHVPCIDMWLYSHSSCPMCRADATPTPSSPAVFRDGLDSE----SVVVVHVRATR 173

[Close]

BLAST of PI0014235 vs. NCBI nr
Match: XP_004142830.1 (RING-H2 finger protein ATL52 [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 7.0e-92
Identity = 163/175 (93.14%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 1   MSSSTDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFSAGDQSPANDPHSLP 60
           MSSST DA IYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRF +GDQS  NDPH+LP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGSGIKDVDGDGTCAICLSEFEEGEEIKTLPE 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGG G KDVDGDGTCAICLSEFEEGEEIKTLPE
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120

Query: 121 CMHSYHMPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPNSGIVVHVLPTRG 176
           C HSYHMPCIDMWLYSHSSCPMCRTNATPTSF+DRLQFETQ NSGIVVHVLPTRG
Sbjct: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTRG 175

[Close]

BLAST of PI0014235 vs. NCBI nr
Match: XP_008458935.1 (PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo] >KAA0042487.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa] >TYK22889.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 347.1 bits (889), Expect = 9.2e-92
Identity = 164/177 (92.66%), Postives = 169/177 (95.48%), Query Frame = 0


Query: 1   MSSSTDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFSAGDQSPANDPHSLP 60
           MSSST DA IYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRF++GDQS ANDPH+LP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGSG--IKDVDGDGTCAICLSEFEEGEEIKTL 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGG G   KDVDGDGTCAICLSEFEEGEEIKTL
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTL 120

Query: 121 PECMHSYHMPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPNSGIVVHVLPTRG 176
           PEC HSYHMPCIDMWLYSHSSCPMCRTNATPTSF+DRLQF+TQPNSGIVVHVLPTRG
Sbjct: 121 PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTRG 177

[Close]

BLAST of PI0014235 vs. NCBI nr
Match: KAE8648538.1 (hypothetical protein Csa_008705 [Cucumis sativus])

HSP 1 Score: 334.7 bits (857), Expect = 4.7e-88
Identity = 157/169 (92.90%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 1   MSSSTDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFSAGDQSPANDPHSLP 60
           MSSST DA IYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRF +GDQS  NDPH+LP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGSGIKDVDGDGTCAICLSEFEEGEEIKTLPE 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGG G KDVDGDGTCAICLSEFEEGEEIKTLPE
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120

Query: 121 CMHSYHMPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPNSGIVVH 170
           C HSYHMPCIDMWLYSHSSCPMCRTNATPTSF+DRLQFETQ NSGIVVH
Sbjct: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVH 169

[Close]

BLAST of PI0014235 vs. NCBI nr
Match: XP_038889238.1 (probable E3 ubiquitin-protein ligase ATL44 [Benincasa hispida])

HSP 1 Score: 328.9 bits (842), Expect = 2.6e-86
Identity = 154/170 (90.59%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 4   STDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFSAGDQSPANDPHSLPITD 63
           S  DATIYSRKLDIFL+AIGSAGAVVTIYHCIMACWCDRRRF++G Q+PANDPHSLPITD
Sbjct: 2   SDTDATIYSRKLDIFLVAIGSAGAVVTIYHCIMACWCDRRRFNSGGQTPANDPHSLPITD 61

Query: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGS-GIKDVDGDGTCAICLSEFEEGEEIKTLPECM 123
           TPRSTENSVVHLIPAHKYEKRMAVDGG  G    +GDGTCAICLSEFEEGEEIKTLPECM
Sbjct: 62  TPRSTENSVVHLIPAHKYEKRMAVDGGGCGGDHGEGDGTCAICLSEFEEGEEIKTLPECM 121

Query: 124 HSYHMPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPNSGIVVHVLP 173
           HSYH+PCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQP+SGIVVHVLP
Sbjct: 122 HSYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPSSGIVVHVLP 171

[Close]

BLAST of PI0014235 vs. NCBI nr
Match: XP_022939139.1 (RING-H2 finger protein ATL52-like [Cucurbita moschata] >KAG7016242.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305.4 bits (781), Expect = 3.1e-79
Identity = 139/171 (81.29%), Postives = 155/171 (90.64%), Query Frame = 0


Query: 4   STDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFSAGDQSPANDPHSLPITD 63
           S+ DA +YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR +AGDQ+PAND HS+ + +
Sbjct: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61

Query: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGSGIKDVDGDGTCAICLSEFEEGEEIKTLPECMH 123
           TPRSTENSVVHLIPAHKYEK+ AVD G      DGDGTCAICLSEFEEGEEI+TLPEC+H
Sbjct: 62  TPRSTENSVVHLIPAHKYEKQKAVDSGG----CDGDGTCAICLSEFEEGEEIRTLPECLH 121

Query: 124 SYHMPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPNSGIVVHVLPTR 175
           SYH+PCIDMWLYSHSSCPMCRT+ATPTS HDRLQFETQP+SGI+VHV PTR
Sbjct: 122 SYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTR 168

[Close]

BLAST of PI0014235 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-17
Identity = 49/139 (35.25%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 17  IFLIAIGSAGAVVTIYHCIMACWCDR-RRFSAGDQSPANDPHSLPITDTPRSTEN----- 76
           I LI I ++  ++  Y+ +++ +C R  + S+ +    N       + T R + N     
Sbjct: 59  IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLN 118

Query: 77  -SVVHLIPAHKYEKRMAVDGGSGIKDVDGDGTCAICLSEFEEGEEIKTLPECMHSYHMPC 136
            S++  I  +KY+        SG   VDG   C++CLSEFEE E ++ LP+C H++H+PC
Sbjct: 119 ESMIKSITVYKYK--------SGDGFVDG-SDCSVCLSEFEENESLRLLPKCNHAFHLPC 178

Query: 137 IDMWLYSHSSCPMCRTNAT 149
           ID WL SHS+CP+CR   T
Sbjct: 179 IDTWLKSHSNCPLCRAFVT 188

[Close]

BLAST of PI0014235 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 85.5 bits (210), Expect = 4.6e-17
Identity = 53/150 (35.33%), Postives = 73/150 (48.67%), Query Frame = 0


Query: 1   MSSSTDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFSAGDQSPANDPHSLP 60
           M ++  D  +    L   LI +    AVV         W   RRF+AG  SP+ +     
Sbjct: 21  MIAAESDMVVILSALLCALICVAGLAAVV------RCAWL--RRFTAGGDSPSPN----- 80

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGSGIKDVDGDGT-CAICLSEFEEGEEIKTLP 120
                +  +   +  +P   +    A +  SG    +GD T CAICL++F +GEEI+ LP
Sbjct: 81  -----KGLKKKALQSLPRSTF---TAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLP 140

Query: 121 ECMHSYHMPCIDMWLYSHSSCPMCRTNATP 150
            C HS+H+ CID WL S SSCP CR   TP
Sbjct: 141 LCGHSFHVECIDKWLVSRSSCPSCRRILTP 149

[Close]

BLAST of PI0014235 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-16
Identity = 53/166 (31.93%), Postives = 87/166 (52.41%), Query Frame = 0


Query: 2   SSSTDDATIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFSAGDQSPA-------- 61
           SSS+D + +      I LI I ++  ++  Y+ +++ +C RRR ++   S A        
Sbjct: 51  SSSSDFSPLL-----IALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSD 110

Query: 62  ------NDPHSLPITDTPRST---------ENSVVHLIPAHKYEKRMAVDGGSGIKDVDG 121
                 N+ ++   T+ P  T         + S++  I  +KY K   +DG     D   
Sbjct: 111 YTWQGTNNNNNNGATN-PNQTIGGGGGDGLDESLIKSITVYKYRK---MDGFVESSD--- 170

Query: 122 DGTCAICLSEFEEGEEIKTLPECMHSYHMPCIDMWLYSHSSCPMCR 145
              C++CLSEF+E E ++ LP+C H++H+PCID WL SHS+CP+CR
Sbjct: 171 ---CSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201

[Close]

BLAST of PI0014235 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-16
Identity = 42/136 (30.88%), Postives = 73/136 (53.68%), Query Frame = 0


Query: 22  IGSAGAVVTIYHCIMACWCD-------RRRFSAGDQSP--ANDPHSLPITDTPRSTENSV 81
           + +A  +V+ Y  ++ C  +       RRR  + DQ+P     PH     +  R  + S 
Sbjct: 52  LATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPH-----EVNRGLDESA 111

Query: 82  VHLIPAHKYEKRMAVDGGSGIKDVDGDGTCAICLSEFEEGEEIKTLPECMHSYHMPCIDM 141
           +  IP  K++KR  V G            C++CL+EF+E E+++ +P C H +H+ CID+
Sbjct: 112 IRAIPVFKFKKRDVVAGEE--DQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDI 171

Query: 142 WLYSHSSCPMCRTNAT 149
           WL  +++CP+CRT+ +
Sbjct: 172 WLQGNANCPLCRTSVS 180

[Close]

BLAST of PI0014235 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-15
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 69  ENSVVHLIPAHKYEKRMAVDGGSGIKDVDGDGTCAICLSEFEEGEEIKTLPECMHSYHMP 128
           +N+VV   P   Y      +   G KD++    CAICL+E E+ E ++ LP C H +H+ 
Sbjct: 97  DNAVVESFPVFAYSS--VKESKIGSKDLE----CAICLNELEDHETVRLLPICNHLFHID 156

Query: 129 CIDMWLYSHSSCPMCRTNATPTS 152
           CID WLYSH++CP+CR+N T  S
Sbjct: 157 CIDTWLYSHATCPVCRSNLTAKS 173

The following BLAST results are available for this feature:

BLAST of PI0014235 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF64	2.9e-16	35.25	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9LRB7	2.9e-16	34.38	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]
O22755	6.5e-16	35.33	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9SRQ8	1.9e-15	31.93	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
P93823	3.2e-15	30.88	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]

BLAST of PI0014235 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNT5	3.4e-92	93.14	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G512950 PE...	[more]
A0A5D3DI14	4.4e-92	92.66	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C9L0	4.4e-92	92.66	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103498194 PE=3 ...	[more]
A0A6J1FG87	1.5e-79	81.29	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111445137...	[more]
A0A6J1BX43	2.5e-58	69.66	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11100612...	[more]

BLAST of PI0014235 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142830.1	7.0e-92	93.14	RING-H2 finger protein ATL52 [Cucumis sativus]	[more]
XP_008458935.1	9.2e-92	92.66	PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo] >KAA0042487.1 RING-H...	[more]
KAE8648538.1	4.7e-88	92.90	hypothetical protein Csa_008705 [Cucumis sativus]	[more]
XP_038889238.1	2.6e-86	90.59	probable E3 ubiquitin-protein ligase ATL44 [Benincasa hispida]	[more]
XP_022939139.1	3.1e-79	81.29	RING-H2 finger protein ATL52-like [Cucurbita moschata] >KAG7016242.1 RING-H2 fin...	[more]

BLAST of PI0014235 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17600.1	2.1e-17	35.25	RING/U-box superfamily protein	[more]
AT2G17450.1	4.6e-17	35.33	RING-H2 finger A3A	[more]
AT3G03550.1	1.3e-16	31.93	RING/U-box superfamily protein	[more]
AT1G04360.1	2.3e-16	30.88	RING/U-box superfamily protein	[more]
AT4G40070.1	3.3e-15	43.37	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 102..143 e-value: 2.3E-6 score: 37.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..144 e-value: 1.8E-12 score: 47.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 102..144 score: 12.326995
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 58..150 e-value: 4.2E-21 score: 76.4
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 9..156
None	No IPR available	PANTHER	PTHR45676:SF43	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 9..156
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 101..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014235.1	PI0014235.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane