PI0014130 (gene) Melon (PI 482460) v1

Overview


Name	PI0014130
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase subunit alpha
Location	chr02: 5588892 .. 5589662 (+)
RNA-Seq Expression	PI0014130
Synteny	PI0014130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAAGGGCAAGCAGATACTATACTATAGGCATTGCAATGCGAAAAGCTTTGCTTGGAGAAATAGAGGTTCAAAGTATATTGACACACGTGCAAAATCTTAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCGGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTCTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAATGGAACCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTGAAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAACCAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTTTTATTCCTTTTTTACATGTGGAAGAAGAAAAAGAAAACTTCCATTTTTGAAATAATAATCAATTACTTTATAAAGAAAAAATTTCATTAA

mRNA sequence

ATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCTTATTATGGACGCTTTATTCTTCGGTATTCAAGAATCGGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTCTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAATGGAACCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTGAAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAACCAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTTTTATTCCTTTTTTACATGTGGAAGAAGAAAAAGAAAACTTCCATTTTTGAAATAATAATCAATTACTTTATAAAGAAAAAATTTCATTAA

Coding sequence (CDS)

ATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCTTATTATGGACGCTTTATTCTTCGGTATTCAAGAATCGGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTCTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAATGGAACCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTGAAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAACCAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTTTTATTCCTTTTTTACATGTGGAAGAAGAAAAAGAAAACTTCCATTTTTGAAATAATAATCAATTACTTTATAAAGAAAAAATTTCATTAA

Protein sequence

MVREKIRVSTRTLKWKCVESRADSKLIMDALFFGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMWKKKKKTSIFEIIINYFIKKKFH

Homology

[Close]

BLAST of PI0014130 vs. ExPASy Swiss-Prot
Match: Q4VZK3 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.2e-87
Identity = 172/237 (72.57%), Postives = 180/237 (75.95%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                            
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMWKKKKK 193
           NVNHSIHSYVNGNE QEILFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEK 236

[Close]

BLAST of PI0014130 vs. ExPASy Swiss-Prot
Match: Q49KW6 (DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoA PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.0e-79
Identity = 155/229 (67.69%), Postives = 165/229 (72.05%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           MVREK+RVSTRTL+WKCVESRADSK +    F                            
Sbjct: 1   MVREKVRVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGPGCVTAQD
Sbjct: 61  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILP SVEIVDNTQ+IANL EPINLCI L+IERNRGYHI+TP N +D SYP+DA+FMPVR
Sbjct: 121 IILPTSVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVR 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLF 185
           N NHSIHSY NGNE QEILFLEIWTNGSLTPKEALHEASRNLID    F
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPF 229

[Close]

BLAST of PI0014130 vs. ExPASy Swiss-Prot
Match: Q09WY5 (DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.5e-78
Identity = 154/230 (66.96%), Postives = 165/230 (71.74%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           M +EK+ VSTR L+WKCVESRADSK +    F                            
Sbjct: 1   MGQEKVTVSTRPLQWKCVESRADSKRLYYGRFLLAPLMRGQADTIGIAMRRALLGEIEGT 60

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPG VTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANL EPI LCIEL+IERNRGY I+TPNN ++ SYP+DA+FMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPVR 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLFY 186
           N NHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLID    F+
Sbjct: 181 NANHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFF 230

[Close]

BLAST of PI0014130 vs. ExPASy Swiss-Prot
Match: Q9MTJ3 (DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri OX=85636 GN=rpoA PE=3 SV=2)

HSP 1 Score: 291.2 bits (744), Expect = 9.3e-78
Identity = 151/229 (65.94%), Postives = 165/229 (72.05%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           MVREK+RVSTRTL+WKCVESR DSK +    F                            
Sbjct: 1   MVREKVRVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNLKEIVLRSNLYGT +ASICVKGPGCVTAQD
Sbjct: 61  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           I+LPPSVEI+DNTQHIA+LMEPI+LCI L+IERNRGYHI++PNN +D SYP+DA+FMPVR
Sbjct: 121 ILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVR 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLF 185
           N NHSIHSY N NE QEILFLEIWTNGSLTPKEALHEASRNLID    F
Sbjct: 181 NANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPF 229

[Close]

BLAST of PI0014130 vs. ExPASy Swiss-Prot
Match: Q2PMQ3 (DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.1e-77
Identity = 154/229 (67.25%), Postives = 163/229 (71.18%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF---------------------------- 60
           MVREKIRVSTRTL+WKCVESR DSK +    F                            
Sbjct: 1   MVREKIRVSTRTLQWKCVESRIDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGT 60

Query: 61  -----------------FGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GI+ESVHEILMNLKEIVLRSNLYGTRDASIC KGPG VTAQD
Sbjct: 61  CITRVKSEKIPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIAN+ EP+NLCIELKIERNRGY I+T  N +D SYP+DA FMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVR 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLF 185
           NVNHSIHSYVNGNE QEILFLEIWTNGSLTPKEAL+EASRNLID    F
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF 229

[Close]

BLAST of PI0014130 vs. ExPASy TrEMBL
Match: A0A218KG62 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoA PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.2e-85
Identity = 172/237 (72.57%), Postives = 180/237 (75.95%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                            
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMWKKKKK 193
           NVNHSIHSYVNGNE QEILFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEK 236

[Close]

BLAST of PI0014130 vs. ExPASy TrEMBL
Match: A0A1X9Q1P4 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.2e-85
Identity = 172/237 (72.57%), Postives = 180/237 (75.95%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                            
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMWKKKKK 193
           NVNHSIHSYVNGNE QEILFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEK 236

[Close]

BLAST of PI0014130 vs. ExPASy TrEMBL
Match: A0A1P8C7R7 (DNA-directed RNA polymerase subunit alpha OS=Cucumis x hytivus OX=442738 GN=rpoA PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.2e-85
Identity = 172/237 (72.57%), Postives = 180/237 (75.95%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                            
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMWKKKKK 193
           NVNHSIHSYVNGNE QEILFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEK 236

[Close]

BLAST of PI0014130 vs. ExPASy TrEMBL
Match: W8E706 (DNA-directed RNA polymerase subunit alpha OS=Cucumis hystrix OX=396994 GN=rpoA PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.2e-85
Identity = 172/237 (72.57%), Postives = 180/237 (75.95%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                            
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMWKKKKK 193
           NVNHSIHSYVNGNE QEILFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEK 236

[Close]

BLAST of PI0014130 vs. ExPASy TrEMBL
Match: A0A4Y5RDR4 (DNA-directed RNA polymerase subunit alpha OS=Cucumis hystrix OX=396994 GN=rpoA PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.2e-85
Identity = 172/237 (72.57%), Postives = 180/237 (75.95%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                            
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMWKKKKK 193
           NVNHSIHSYVNGNE QEILFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEK 236

[Close]

BLAST of PI0014130 vs. NCBI nr
Match: YP_009004075.1 (RNA polymerase alpha subunit [Cucumis hystrix] >YP_247632.1 RNA polymerase alpha subunit [Cucumis sativus] >Q4VZK3.1 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit alpha; Short=RNA polymerase subunit alpha [Cucumis sativus] >ALF03334.1 RNA polymerase alpha subunit [Cucumis sativus var. hardwickii] >AVE15363.1 RpoA [Cucumis sativus var. sativus] >AAZ94682.1 RNA polymerase alpha subunit [Cucumis sativus] >ABI97448.1 RNA polymerase alpha subunit [Cucumis sativus] >ABI98777.1 RNA polymerase alpha subunit [Cucumis sativus])

HSP 1 Score: 323.2 bits (827), Expect = 1.7e-84
Identity = 172/237 (72.57%), Postives = 180/237 (75.95%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                            
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMWKKKKK 193
           NVNHSIHSYVNGNE QEILFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEK 236

[Close]

BLAST of PI0014130 vs. NCBI nr
Match: YP_009346515.1 (RNA polymerase alpha subunit [Cucumis x hytivus] >AOW71126.1 RNA polymerase alpha subunit [Cucumis x hytivus] >QCY72874.1 RpoA [Cucumis hystrix])

HSP 1 Score: 323.2 bits (827), Expect = 1.7e-84
Identity = 172/237 (72.57%), Postives = 180/237 (75.95%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                            
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMWKKKKK 193
           NVNHSIHSYVNGNE QEILFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEK 236

[Close]

BLAST of PI0014130 vs. NCBI nr
Match: QHB75996.1 (RNA polymerase alpha subunit [Cucumis melo subsp. melo])

HSP 1 Score: 320.5 bits (820), Expect = 1.1e-83
Identity = 169/229 (73.80%), Postives = 171/229 (74.67%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                            
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGT 60

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLF 185
           NVNHSIHSYVNGNE QEILFLEIWTNGSLTPKEALHEASRNLID    F
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPF 229

[Close]

BLAST of PI0014130 vs. NCBI nr
Match: QJF46416.1 (RNA polymerase alpha subunit [Cucumis melo])

HSP 1 Score: 320.1 bits (819), Expect = 1.4e-83
Identity = 170/242 (70.25%), Postives = 177/242 (73.14%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                            
Sbjct: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANL EPIN CIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMWKKKKKTSI 198
           NVNHSIHSYVNGNE QEILFLEIWTNGSLTPKEALHEASRNLID    F   +++K+   
Sbjct: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248

[Close]

BLAST of PI0014130 vs. NCBI nr
Match: YP_004841815.1 (RNA polymerase alpha subunit [Cucumis melo subsp. melo] >YP_009860105.1 RNA polymerase alpha subunit [Cucumis melo subsp. agrestis] >ASY96605.1 RNA polymerase alpha subunit [Cucumis melo var. conomon] >ASY96692.1 RNA polymerase alpha subunit [Cucumis melo var. makuwa] >ASY96779.1 RNA polymerase alpha subunit [Cucumis melo var. momordica] >ASY96866.1 RNA polymerase alpha subunit [Cucumis melo var. dudaim] >ASY96953.1 RNA polymerase alpha subunit [Cucumis melo var. cantalupo] >ASY97127.1 RNA polymerase alpha subunit [Cucumis melo var. inodorus] >ASY97301.1 RNA polymerase alpha subunit [Cucumis melo var. flexuosus] >QRW36587.1 RNA polymerase alpha subunit [Cucumis melo])

HSP 1 Score: 320.1 bits (819), Expect = 1.4e-83
Identity = 170/242 (70.25%), Postives = 177/242 (73.14%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                            
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANL EPIN CIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMWKKKKKTSI 198
           NVNHSIHSYVNGNE QEILFLEIWTNGSLTPKEALHEASRNLID    F   +++K+   
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 240

[Close]

BLAST of PI0014130 vs. TAIR 10
Match: ATCG00740.1 (RNA polymerase subunit alpha )

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-72
Identity = 140/229 (61.14%), Postives = 159/229 (69.43%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALFF--------------------------- 60
           MVREK++VSTRTL+WKCVES+ DSK +    F                            
Sbjct: 1   MVREKVKVSTRTLQWKCVESKRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 61  ------------------GIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
                             GIQESVHEILMNL EIVLRSNLYGTR+A ICV+GPG +TA+D
Sbjct: 61  CITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 120

Query: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPP+VEI+DNTQHIA L EPI+LCIELKIERNRGY ++  NN +D SYP+DA+FMPV 
Sbjct: 121 IILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVE 180

Query: 181 NVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDFLFLF 185
           N NHSIHSY NGNE QEILFLEIWTNGSLTPKEALH+ASRNLI+    F
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPF 229

The following BLAST results are available for this feature:

BLAST of PI0014130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK3	2.2e-87	72.57	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=...	[more]
Q49KW6	5.0e-79	67.69	DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus...	[more]
Q09WY5	2.5e-78	66.96	DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3...	[more]
Q9MTJ3	9.3e-78	65.94	DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri OX=8...	[more]
Q2PMQ3	2.1e-77	67.25	DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV...	[more]

BLAST of PI0014130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG62	8.2e-85	72.57	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus var. hardwickii OX=...	[more]
A0A1X9Q1P4	8.2e-85	72.57	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=...	[more]
A0A1P8C7R7	8.2e-85	72.57	DNA-directed RNA polymerase subunit alpha OS=Cucumis x hytivus OX=442738 GN=rpoA...	[more]
W8E706	8.2e-85	72.57	DNA-directed RNA polymerase subunit alpha OS=Cucumis hystrix OX=396994 GN=rpoA P...	[more]
A0A4Y5RDR4	8.2e-85	72.57	DNA-directed RNA polymerase subunit alpha OS=Cucumis hystrix OX=396994 GN=rpoA P...	[more]

BLAST of PI0014130 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009004075.1	1.7e-84	72.57	RNA polymerase alpha subunit [Cucumis hystrix] >YP_247632.1 RNA polymerase alpha...	[more]
YP_009346515.1	1.7e-84	72.57	RNA polymerase alpha subunit [Cucumis x hytivus] >AOW71126.1 RNA polymerase alph...	[more]
QHB75996.1	1.1e-83	73.80	RNA polymerase alpha subunit [Cucumis melo subsp. melo]	[more]
QJF46416.1	1.4e-83	70.25	RNA polymerase alpha subunit [Cucumis melo]	[more]
YP_004841815.1	1.4e-83	70.25	RNA polymerase alpha subunit [Cucumis melo subsp. melo] >YP_009860105.1 RNA poly...	[more]

BLAST of PI0014130 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00740.1	1.2e-72	61.14	RNA polymerase subunit alpha	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 23..187 e-value: 7.8E-5 score: -15.1
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 114..179 e-value: 2.9E-6 score: 27.7
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 34..113 e-value: 3.2E-11 score: 43.6
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 30..131 e-value: 4.5E-27 score: 96.3
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 33..132
IPR011773	DNA-directed RNA polymerase, alpha subunit	PANTHER	PTHR32108	DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA	coord: 32..186
None	No IPR available	CDD	cd06928	RNAP_alpha_NTD	coord: 34..184 e-value: 4.93169E-66 score: 200.773
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 50..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014130.1	PI0014130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009536	plastid
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity