PI0014097 (gene) Melon (PI 482460) v1

Overview


Name	PI0014097
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein LSM12 homolog A
Location	chr10: 18815211 .. 18817600 (+)
RNA-Seq Expression	PI0014097
Synteny	PI0014097

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAGCCCTAATTTATATGAGGATTAGATAATTGTGTGGTTACCCAACTCCTTGAATAGGAGGAAACAAATTTTATAGCGAGGAAGGAGAAAATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCCTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTTCATTTCTAAATTTTCATCACTGTGTTTTCACTTTTCATTATCTTGAATTCCTTGACTGTTTTGTTCTTCCGATATTTTTGTGCTCGATACAGGAGGGTTCGAAGCCAGGACCTCGCAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGCGAAGATCCTCTTGATCTAAAAAACGGTTACCTCGATCTCAATACTCTCAATACTCTCCGTGTCCGAGAGGAACTTGCCATTAGGTTTTTGTTTTTCAGTAACCTATTACCTCCCTCTACATTTGTTTTGGATTTAAGTTTAATTGATTTTTTTTCAGGCAAGCTGAGGCAGAGGCTGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCTCTATCTAAAACGTAAGGAATTCTTTTATGGTTTTTATCCTTTAATGCAATGTCAATTATTTGACAAACTTGGGTTTAACAGTTTTATCATGGATGGGGAAAATTGGACCATAAAACCAATATTTTGGGTCTTATATGATGTGTAATGAAATAAGGATTATGTTCGCCTTACCTGACCTGGGCTAGCATGGTAGTTAATCTAGAAGCTGTTTTCTTTTTTAACCATTATGCAAGTTGTAGGAAAAAAATGAGTATAGTGTATGGTTTTAAGAAAGTTAATTTTTTAGTAGTTATAAACTTCTATTCAATGGTAAAATTATTTTACTTACGTCTGTAGTGATCTGTAGTGATATGAAAATGATACCAATGACTTTGTTAGAATGATAATTTTAATGATAATTTTAATGGCTAAATACTAAATGAGATGTATCTGCCTATGGAATCTGAAAATTTTATAGAATCTGAAAATTAGAAAATGGTTTGGTTTGGGTACCGGGTGGGGTGGGGTTGCAAACCCAGGTATGTCCATTGGATGATCTGATTTTATGAGGTATGCAAATGTAGATGCTGACACAAAGTTAGAATTTCATTCTAATACTTAATTTTTCTACTCTACATTTTTGTTTTGTTTGTTATTAGGCTTCCGGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGCGTTAGCAGTCCATACCTACCCGACTCTGTTTCTGGGGGCACCCCTGCTGCCAATGAGCGCGTGAAGAAAGTGGTATGAAATCACACTTTTTACCGTTTTCATTTTTTGATGTCTTGCAGAAACTAACCTTTTTCTTTTTTCCTAAAAGCTTGAATTGGAGAGGAAGCGATTGCAAGTTCGTGTCGGTGGTCAGTAATGTCATTCATCCCCATCCTTCTTTCCTGGGTGACAAGCGATTACCTGCACTGGTGAAGGTATTATCCATTTTAGAGGCAGTGTCAGCAATCCCGGAGGAATCTAGTGTTGGGTGGTAACCTAGTCTGTTGCCAAAGTTTTTTTTGTTTACTAGTTTATGGTTGTTGATTTTCCCCGTTTTTCCGTTTATGGACTGCACCGGACACATGGCAAAGCTTTTTGGGTCCATATTTAAAGTTTACTGATTGGTCATAATGTGGAAAAACTAAACCGGATGTATTTAGAAAATTACTGAGTACTAGTTTCTCTGTTTTTATTTCTTAGACCTTTTCTTCGTTAATTATTAAACATCGATGAACAGAAACAATTTTGATTTTGAAATAGGTGACCTGCCTGCTAATGGCCTAACATTGATATTGTTTGTGGCATAAGATTTGCCCCTATGGTTGTTATTTGCATGTCGCCAAACTGGTTAGTTGAAGTTGAGAAAGTTTAGTGAAATCACATTTTTGTAGACGTCTTCCTCTCAAGAAAGGCCATAGGCAAATGAAAAGCTAGGTTAGTTGCCATGGCGCCAAAAGAACGTTGATTTATTGATTGATTTATTTATTTTCTATGCTTTTTCTACTTTTCCCTCTTTGTTATGCTGACCTTTACTTTTCCTAATGGCCCCATTGTTGACTGTTTCTTTATTCCACTTTTGAAATTGCTAAGCTAATTCTTAAACCTTACGCTGGGACATTTGAAAGGAAAAAGTAATGTATTTGCCGTCTGGTTAGGGAATAAAATGATAACCTTTTATCTGCCCTTTCCCTCAAGGACAGCCAAATTTGAAGACATTCAAAGAGAACTTCTTTTTTTAAG

mRNA sequence

GTAAAGCCCTAATTTATATGAGGATTAGATAATTGTGTGGTTACCCAACTCCTTGAATAGGAGGAAACAAATTTTATAGCGAGGAAGGAGAAAATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCCTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTTCATTTCTAAATTTTCATCACTGTGTTTTCACTTTTCATTATCTTGAATTCCTTGACTGTTTTGTTCTTCCGATATTTTTGTGCTCGATACAGGAGGGTTCGAAGCCAGGACCTCGCAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGCGAAGATCCTCTTGATCTAAAAAACGGTTACCTCGATCTCAATACTCTCAATACTCTCCGTGTCCGAGAGGAACTTGCCATTAGGCAAGCTGAGGCAGAGGCTGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCTCTATCTAAAACGCTTCCGGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGCGTTAGCAGTCCATACCTACCCGACTCTGTTTCTGGGGGCACCCCTGCTGCCAATGAGCGCGTGAAGAAAGTGCTTGAATTGGAGAGGAAGCGATTGCAAGTTCGTGTCGGTGGTCAGTAATGTCATTCATCCCCATCCTTCTTTCCTGGGTGACAAGCGATTACCTGCACTGGTGAAGGTATTATCCATTTTAGAGGCAGTGTCAGCAATCCCGGAGGAATCTAGTGTTGGGTGGTAACCTAGTCTGTTGCCAAAGTTTTTTTTGTTTACTAGTTTATGGTTGTTGATTTTCCCCGTTTTTCCGTTTATGGACTGCACCGGACACATGGCAAAGCTTTTTGGGTCCATATTTAAAGTTTACTGATTGGTCATAATGTGGAAAAACTAAACCGGATGTATTTAGAAAATTACTGAGTACTAGTTTCTCTGTTTTTATTTCTTAGACCTTTTCTTCGTTAATTATTAAACATCGATGAACAGAAACAATTTTGATTTTGAAATAGGTGACCTGCCTGCTAATGGCCTAACATTGATATTGTTTGTGGCATAAGATTTGCCCCTATGGTTGTTATTTGCATGTCGCCAAACTGGTTAGTTGAAGTTGAGAAAGTTTAGTGAAATCACATTTTTGTAGACGTCTTCCTCTCAAGAAAGGCCATAGGCAAATGAAAAGCTAGGTTAGTTGCCATGGCGCCAAAAGAACGTTGATTTATTGATTGATTTATTTATTTTCTATGCTTTTTCTACTTTTCCCTCTTTGTTATGCTGACCTTTACTTTTCCTAATGGCCCCATTGTTGACTGTTTCTTTATTCCACTTTTGAAATTGCTAAGCTAATTCTTAAACCTTACGCTGGGACATTTGAAAGGAAAAAGTAATGTATTTGCCGTCTGGTTAGGGAATAAAATGATAACCTTTTATCTGCCCTTTCCCTCAAGGACAGCCAAATTTGAAGACATTCAAAGAGAACTTCTTTTTTTAAG

Coding sequence (CDS)

ATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCCTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTTCATTTCTAAATTTTCATCACTGTGTTTTCACTTTTCATTATCTTGAATTCCTTGACTGTTTTGTTCTTCCGATATTTTTGTGCTCGATACAGGAGGGTTCGAAGCCAGGACCTCGCAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGCGAAGATCCTCTTGATCTAAAAAACGGTTACCTCGATCTCAATACTCTCAATACTCTCCGTGTCCGAGAGGAACTTGCCATTAGGCAAGCTGAGGCAGAGGCTGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCTCTATCTAAAACGCTTCCGGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGCGTTAGCAGTCCATACCTACCCGACTCTGTTTCTGGGGGCACCCCTGCTGCCAATGAGCGCGTGAAGAAAGTGCTTGAATTGGAGAGGAAGCGATTGCAAGTTCGTGTCGGTGGTCAGTAA

Protein sequence

MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPDSVSGGTPAANERVKKVLELERKRLQVRVGGQ

Homology

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BLAST of PI0014097 vs. ExPASy Swiss-Prot
Match: Q6NSN1 (Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.6e-11
Identity = 60/215 (27.91%), Postives = 95/215 (44.19%), Query Frame = 0


Query: 7   GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFL 66
           G G+ FSVGS  S  T LG   QG+V+ FD PS +L L                      
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLK--------------------- 64

Query: 67  DCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFL-GHGEDPLDLKNGYLDLNTL-N 126
                    C+   G KP    ++ L+   Y+ E   +    E P  L +  L+ N L N
Sbjct: 65  ---------CAPSSG-KPN-LSDVMLVNLAYVSEVDIITDRAETPPPLAS--LNFNKLVN 124

Query: 127 TLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSP 186
             R  +E  +  A A    +  GV+ E Q +F  + KT+   +W +  I+VM++V +S P
Sbjct: 125 RARAEKEDKLSLAYA----VSAGVSVEGQQLFQTIHKTIKECKWQEKNIIVMDDVVISPP 181

Query: 187 YLPDSVSGGTPAANERVKKVLELERKRLQVRVGGQ 219
           Y  D+  G   +A   V+K++E   + ++ ++  Q
Sbjct: 185 YQVDNCKGKEGSALSHVRKIVEKHFRDVESQISVQ 181

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BLAST of PI0014097 vs. ExPASy Swiss-Prot
Match: Q6PBA2 (Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.0e-11
Identity = 58/202 (28.71%), Postives = 90/202 (44.55%), Query Frame = 0


Query: 7   GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFL 66
           G G+ FSVGS  S  T LG   QG+V+ FD PS +L L   SS                 
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCPSS----------------- 64

Query: 67  DCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLG-HGEDPLDLKNGYLDLNTL-N 126
                           KP    ++ L+   Y+ E   +    E P  L +  L+++ L N
Sbjct: 65  --------------SGKPN-LSDVILINLAYVSEVDIINDRTETPPPLAS--LNISKLAN 124

Query: 127 TLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSP 186
             R  +E  + QA A    I  GV+ E Q +F  + KT+   +W +  I+VM++V +S P
Sbjct: 125 RARTEKEDKLSQAYA----ISAGVSIEGQQLFQTIHKTIKDCKWQEKNIIVMDDVVISPP 168

Query: 187 YLPDSVSGGTPAANERVKKVLE 206
           Y  ++  G   +A   ++K++E
Sbjct: 185 YQVENCKGKEGSALSHIRKIVE 168

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BLAST of PI0014097 vs. ExPASy Swiss-Prot
Match: Q5ZML5 (Protein LSM12 homolog OS=Gallus gallus OX=9031 GN=LSM12 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.7e-10
Identity = 58/200 (29.00%), Postives = 88/200 (44.00%), Query Frame = 0


Query: 9   GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDC 68
           G+ FSVGS  S +T      QG+V+ FD PS +L L   SS                   
Sbjct: 5   GECFSVGSQVSCRTCQEQRLQGEVVAFDYPSKMLALKCPSS------------------- 64

Query: 69  FVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLG-HGEDPLDLKNGYLDLNTL-NTL 128
                         KP    +I L+   Y+ E   +    E P  L +  L+++ L N  
Sbjct: 65  ------------SGKPN-HADILLVNLQYVSEVEIINDRTETPPPLAS--LNVSKLANKA 124

Query: 129 RVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYL 188
           R+ +E  + QA A    I  GV+ E Q +F  + KT+   +W +  IVVM EV ++ PY 
Sbjct: 125 RMEKEEKLSQAYA----ISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVIAPPYQ 166

Query: 189 PDSVSGGTPAANERVKKVLE 206
            ++  G   +A   V+K++E
Sbjct: 185 VENCKGKEGSALGHVRKIVE 166

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BLAST of PI0014097 vs. ExPASy Swiss-Prot
Match: Q0VCF9 (Protein LSM12 homolog OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 56/200 (28.00%), Postives = 86/200 (43.00%), Query Frame = 0


Query: 9   GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDC 68
           G+ FSVGS  S +T      QG+V+ FD  S +L L   SS                   
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSS------------------- 65

Query: 69  FVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLG-HGEDPLDLKNGYLDLNTL-NTL 128
                         KP    +I L+   Y+ E   +    E P  L +  L+++ L +  
Sbjct: 66  ------------SGKPN-HADILLINLQYVSEVEIINDRTETPPPLAS--LNVSKLASKA 125

Query: 129 RVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYL 188
           R  +E  + QA A    I  GV+ E Q +F  + KT+   +W +  IVVM EV ++ PY 
Sbjct: 126 RTEKEEKLSQAYA----ISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQ 167

Query: 189 PDSVSGGTPAANERVKKVLE 206
            ++  G   +A   V+K++E
Sbjct: 186 VENCKGKEGSALSHVRKIVE 167

[Close]

BLAST of PI0014097 vs. ExPASy Swiss-Prot
Match: Q3MHD2 (Protein LSM12 homolog OS=Homo sapiens OX=9606 GN=LSM12 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 56/200 (28.00%), Postives = 86/200 (43.00%), Query Frame = 0


Query: 9   GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFLDC 68
           G+ FSVGS  S +T      QG+V+ FD  S +L L   SS                   
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSS------------------- 65

Query: 69  FVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLG-HGEDPLDLKNGYLDLNTL-NTL 128
                         KP    +I L+   Y+ E   +    E P  L +  L+++ L +  
Sbjct: 66  ------------SGKPN-HADILLINLQYVSEVEIINDRTETPPPLAS--LNVSKLASKA 125

Query: 129 RVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYL 188
           R  +E  + QA A    I  GV+ E Q +F  + KT+   +W +  IVVM EV ++ PY 
Sbjct: 126 RTEKEEKLSQAYA----ISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQ 167

Query: 189 PDSVSGGTPAANERVKKVLE 206
            ++  G   +A   V+K++E
Sbjct: 186 VENCKGKEGSALSHVRKIVE 167

[Close]

BLAST of PI0014097 vs. ExPASy TrEMBL
Match: A0A1S3BGE7 (protein LSM12 homolog A OS=Cucumis melo OX=3656 GN=LOC103489557 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 6.5e-85
Identity = 180/218 (82.57%), Postives = 184/218 (84.40%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL     +    F   V TF
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILT----TLGDEFQGQVITF 60

Query: 61  HYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNGYLDL 120
                      P  +  +QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKN YLD 
Sbjct: 61  D---------RPSNILVLQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLD- 120

Query: 121 NTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180
             LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV
Sbjct: 121 --LNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180

Query: 181 SSPYLPDSVSGGTPAANERVKKVLELERKRLQVRVGGQ 219
           +SPYLPDSVSGGTPAANERVKKVLELERKRLQVR GGQ
Sbjct: 181 NSPYLPDSVSGGTPAANERVKKVLELERKRLQVR-GGQ 201

[Close]

BLAST of PI0014097 vs. ExPASy TrEMBL
Match: A0A0A0KQA9 (AD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603270 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.5e-84
Identity = 176/218 (80.73%), Postives = 177/218 (81.19%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL                
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL---------------- 60

Query: 61  HYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNGYLDL 120
                             QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKN YLD 
Sbjct: 61  ------------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLD- 120

Query: 121 NTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180
             LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV
Sbjct: 121 --LNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180

Query: 181 SSPYLPDSVSGGTPAANERVKKVLELERKRLQVRVGGQ 219
           SSPYLP+SVSGGTPAANERVKKVLE ERKRLQVR GGQ
Sbjct: 181 SSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGGQ 181

[Close]

BLAST of PI0014097 vs. ExPASy TrEMBL
Match: A0A5A7SWT7 (Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G003390 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.8e-82
Identity = 174/218 (79.82%), Postives = 175/218 (80.28%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                  
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL------------------ 60

Query: 61  HYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNGYLDL 120
                              EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKN YLD 
Sbjct: 61  -------------------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLD- 120

Query: 121 NTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180
             LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV
Sbjct: 121 --LNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 177

Query: 181 SSPYLPDSVSGGTPAANERVKKVLELERKRLQVRVGGQ 219
           +SPYLPDSVSGGTPAANERVKKVLELERKRLQVR GGQ
Sbjct: 181 NSPYLPDSVSGGTPAANERVKKVLELERKRLQVR-GGQ 177

[Close]

BLAST of PI0014097 vs. ExPASy TrEMBL
Match: A0A5D3CUL6 (Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00770 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 8.8e-82
Identity = 171/214 (79.91%), Postives = 172/214 (80.37%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                  
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL------------------ 60

Query: 61  HYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNGYLDL 120
                              EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKN YLD 
Sbjct: 61  -------------------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLD- 120

Query: 121 NTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180
             LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV
Sbjct: 121 --LNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 174

Query: 181 SSPYLPDSVSGGTPAANERVKKVLELERKRLQVR 215
           +SPYLPDSVSGGTPAANERVKKVLELERKRLQVR
Sbjct: 181 NSPYLPDSVSGGTPAANERVKKVLELERKRLQVR 174

[Close]

BLAST of PI0014097 vs. ExPASy TrEMBL
Match: A0A6J1DDK3 (protein LSM12 homolog OS=Momordica charantia OX=3673 GN=LOC111019118 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.5e-81
Identity = 170/218 (77.98%), Postives = 175/218 (80.28%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTF 60
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILVL                
Sbjct: 1   MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILVL---------------- 60

Query: 61  HYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNGYLDL 120
                             QEGSKPGP RNIRLLKANYIKEF+FLGHGEDPLDLK  YLD 
Sbjct: 61  ------------------QEGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLD- 120

Query: 121 NTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180
             LN+LR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV
Sbjct: 121 --LNSLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180

Query: 181 SSPYLPDSVSGGTPAANERVKKVLELERKRLQVRVGGQ 219
           SSPYL +SV+GGTPAANERVKKVLELERKRLQVR GGQ
Sbjct: 181 SSPYLAESVTGGTPAANERVKKVLELERKRLQVRGGGQ 181

[Close]

BLAST of PI0014097 vs. NCBI nr
Match: XP_008447009.1 (PREDICTED: protein LSM12 homolog A [Cucumis melo])

HSP 1 Score: 323.6 bits (828), Expect = 1.4e-84
Identity = 180/218 (82.57%), Postives = 184/218 (84.40%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL     +    F   V TF
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILT----TLGDEFQGQVITF 60

Query: 61  HYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNGYLDL 120
                      P  +  +QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKN YLD 
Sbjct: 61  D---------RPSNILVLQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLD- 120

Query: 121 NTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180
             LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV
Sbjct: 121 --LNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180

Query: 181 SSPYLPDSVSGGTPAANERVKKVLELERKRLQVRVGGQ 219
           +SPYLPDSVSGGTPAANERVKKVLELERKRLQVR GGQ
Sbjct: 181 NSPYLPDSVSGGTPAANERVKKVLELERKRLQVR-GGQ 201

[Close]

BLAST of PI0014097 vs. NCBI nr
Match: XP_038892233.1 (protein LSM12 homolog A-like [Benincasa hispida])

HSP 1 Score: 322.4 bits (825), Expect = 3.0e-84
Identity = 176/218 (80.73%), Postives = 177/218 (81.19%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL                
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL---------------- 60

Query: 61  HYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNGYLDL 120
                             QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKN YLD 
Sbjct: 61  ------------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLD- 120

Query: 121 NTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180
             LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV
Sbjct: 121 --LNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180

Query: 181 SSPYLPDSVSGGTPAANERVKKVLELERKRLQVRVGGQ 219
           SSPYLP+SVSGGTPAANERVKKVLELERKRLQVR  GQ
Sbjct: 181 SSPYLPESVSGGTPAANERVKKVLELERKRLQVRGSGQ 181

[Close]

BLAST of PI0014097 vs. NCBI nr
Match: XP_004135229.1 (protein LSM12 homolog A [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 3.0e-84
Identity = 176/218 (80.73%), Postives = 177/218 (81.19%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL                
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL---------------- 60

Query: 61  HYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNGYLDL 120
                             QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKN YLD 
Sbjct: 61  ------------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLD- 120

Query: 121 NTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180
             LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV
Sbjct: 121 --LNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180

Query: 181 SSPYLPDSVSGGTPAANERVKKVLELERKRLQVRVGGQ 219
           SSPYLP+SVSGGTPAANERVKKVLE ERKRLQVR GGQ
Sbjct: 181 SSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGGQ 181

[Close]

BLAST of PI0014097 vs. NCBI nr
Match: KGN52415.2 (hypothetical protein Csa_008581 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 2.2e-82
Identity = 173/218 (79.36%), Postives = 174/218 (79.82%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                  
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL------------------ 60

Query: 61  HYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNGYLDL 120
                              EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKN YLD 
Sbjct: 61  -------------------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLD- 120

Query: 121 NTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180
             LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV
Sbjct: 121 --LNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 178

Query: 181 SSPYLPDSVSGGTPAANERVKKVLELERKRLQVRVGGQ 219
           SSPYLP+SVSGGTPAANERVKKVLE ERKRLQVR GGQ
Sbjct: 181 SSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGGQ 178

[Close]

BLAST of PI0014097 vs. NCBI nr
Match: KAA0034336.1 (protein LSM12-like protein A [Cucumis melo var. makuwa])

HSP 1 Score: 315.5 bits (807), Expect = 3.7e-82
Identity = 174/218 (79.82%), Postives = 175/218 (80.28%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                  
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL------------------ 60

Query: 61  HYLEFLDCFVLPIFLCSIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNGYLDL 120
                              EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKN YLD 
Sbjct: 61  -------------------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLD- 120

Query: 121 NTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 180
             LNTLR REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV
Sbjct: 121 --LNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV 177

Query: 181 SSPYLPDSVSGGTPAANERVKKVLELERKRLQVRVGGQ 219
           +SPYLPDSVSGGTPAANERVKKVLELERKRLQVR GGQ
Sbjct: 181 NSPYLPDSVSGGTPAANERVKKVLELERKRLQVR-GGQ 177

[Close]

BLAST of PI0014097 vs. TAIR 10
Match: AT1G24050.1 (RNA-processing, Lsm domain )

HSP 1 Score: 178.7 bits (452), Expect = 5.0e-45
Identity = 105/209 (50.24%), Postives = 132/209 (63.16%), Query Frame = 0


Query: 7   GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSSFLNFHHCVFTFHYLEFL 66
           G G+ F+VG+ +S+K   GDEF+G V+ +D   N                 F F      
Sbjct: 14  GEGEKFAVGNIYSVKVITGDEFRGIVMAYDPIPN-----------------FVF------ 73

Query: 67  DCFVLPIFLCSIQEGSKPGP--RRNIRLLKANYIKEFSFLGHGEDPLDLKNGYLDLNTLN 126
                       +EG+KP P   +N R++ A++I   S+LG  EDPLD  N  +D   LN
Sbjct: 74  -----------FEEGTKPRPGHLKNTRMVNASFITGLSYLGKTEDPLDSDNFSVD---LN 133

Query: 127 TLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPY 186
            LR +E LAIRQAEA+AER+GVGVT+EAQSIFDALSKTLPV+W+ + I+VM EVRV SPY
Sbjct: 134 GLRAKEALAIRQAEADAERMGVGVTAEAQSIFDALSKTLPVQWENSDILVMKEVRVRSPY 185

Query: 187 LPDSVSGGTPAANERVKKVLELERKRLQV 214
           L D V GGT AAN RVKKVLELER+RLQ+
Sbjct: 194 LSDCVFGGTDAANNRVKKVLELERRRLQL 185

[Close]

BLAST of PI0014097 vs. TAIR 10
Match: AT1G70220.1 (RNA-processing, Lsm domain )

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-31
Identity = 86/219 (39.27%), Postives = 122/219 (55.71%), Query Frame = 0


Query: 3   LDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHIL-----SSFLNFHHCV 62
           +D  G  + F VG  +++K T GD+F G V+ +D   N  V  IL     S  ++ + C 
Sbjct: 11  VDSGGEDEKFEVGKVYAVKLTTGDQFNGIVLAYDSEPNFAVFDILFRNRYSQLVDSYLCY 70

Query: 63  FTFHYLEFLDCF-VLPIFLCSIQEGSKPGP--RRNIRLLKANYIKEFSFLGHGEDPLDLK 122
           F F       CF V    L  +QEG+KP P   +++R++  NYI E   LG  ++ L  K
Sbjct: 71  FAFLISSSCVCFRVFLDGLVILQEGTKPKPLDSKSLRMVNVNYITEMKNLGRVKERL-AK 130

Query: 123 NGYLDLNTLNTLRVREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVV 182
           N  ++L+ L    + +E     A +  E+IG GVT+E Q IFDA+SKTLP+RW    ++V
Sbjct: 131 NTLVNLDGL----IEKE---NHAISNVEKIGFGVTAEGQMIFDAISKTLPIRWVNKEMLV 190

Query: 183 MNEVRVSSPYLPDSVSGGTPAANERVKKVLELERKRLQV 214
           M +V + SPY  D V GG    NERVK VL  ERK+LQ+
Sbjct: 191 MGDVFIRSPYHSDCVYGGPRMVNERVKHVLGQERKKLQL 221

The following BLAST results are available for this feature:

BLAST of PI0014097 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NSN1	4.6e-11	27.91	Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1	[more]
Q6PBA2	6.0e-11	28.71	Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1	[more]
Q5ZML5	8.7e-10	29.00	Protein LSM12 homolog OS=Gallus gallus OX=9031 GN=LSM12 PE=2 SV=1	[more]
Q0VCF9	1.6e-08	28.00	Protein LSM12 homolog OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2	[more]
Q3MHD2	1.6e-08	28.00	Protein LSM12 homolog OS=Homo sapiens OX=9606 GN=LSM12 PE=1 SV=2	[more]

BLAST of PI0014097 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BGE7	6.5e-85	82.57	protein LSM12 homolog A OS=Cucumis melo OX=3656 GN=LOC103489557 PE=3 SV=1	[more]
A0A0A0KQA9	1.5e-84	80.73	AD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603270 PE=3 SV=...	[more]
A0A5A7SWT7	1.8e-82	79.82	Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3CUL6	8.8e-82	79.91	Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1DDK3	1.5e-81	77.98	protein LSM12 homolog OS=Momordica charantia OX=3673 GN=LOC111019118 PE=3 SV=1	[more]

BLAST of PI0014097 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447009.1	1.4e-84	82.57	PREDICTED: protein LSM12 homolog A [Cucumis melo]	[more]
XP_038892233.1	3.0e-84	80.73	protein LSM12 homolog A-like [Benincasa hispida]	[more]
XP_004135229.1	3.0e-84	80.73	protein LSM12 homolog A [Cucumis sativus]	[more]
KGN52415.2	2.2e-82	79.36	hypothetical protein Csa_008581 [Cucumis sativus]	[more]
KAA0034336.1	3.7e-82	79.82	protein LSM12-like protein A [Cucumis melo var. makuwa]	[more]

BLAST of PI0014097 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24050.1	5.0e-45	50.24	RNA-processing, Lsm domain	[more]
AT1G70220.1	2.4e-31	39.27	RNA-processing, Lsm domain	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 120..140
IPR019181	Anticodon-binding domain	SMART	SM00995	AD_2	coord: 119..203 e-value: 4.2E-29 score: 112.7
IPR019181	Anticodon-binding domain	PFAM	PF09793	AD	coord: 123..203 e-value: 3.9E-22 score: 78.2
IPR039683	Protein Lsm12-like	PANTHER	PTHR13542	LSM12 HOMOLOG	coord: 7..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014097.2	PI0014097.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030574	collagen catabolic process
biological_process	GO:0030198	extracellular matrix organization
biological_process	GO:0006508	proteolysis
cellular_component	GO:0031012	extracellular matrix
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008270	zinc ion binding