PI0013833 (gene) Melon (PI 482460) v1

Overview


Name	PI0013833
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Protein TonB isoform X1
Location	chr08: 23288682 .. 23289070 (+)
RNA-Seq Expression	PI0013833
Synteny	PI0013833

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTGCGTGCTTTACACAAGCCCTCTTGTTTCTGGACAAGACACTTTTTCTGCGTCTCCCCTCATTAGACCAGCTACCAACACCAGTAAACGGTGTGTATTTCTTAATTCTTGCAGTCCTAATCTTTGGGGGGTCTTGGGCTTGCTGCAAGTTTAGTAGGAGGCAAGCAGGTGGTATCCCATATCAAGAGCTTGAAATGGCCGTGCCAGAATCTTCCTCAGCTTGAAACTGCTGAAGGTTGGGATCAGGGTTGGGATGATGATTGGGATGAATAAAAATTCTGTGAAATCACCAGGGAGGCGTCATATTGGAAACATTTCACCAAATGGCCTTACTGCTAGGTCCAATAAAGATGGGTGGGAGATGATTGGGATGTTTAGTTAA

mRNA sequence

ATGGAGAGTGCGTGCTTTACACAAGCCCTCTTGTTTCTGGACAAGACACTTTTTCTGCGTCTCCCCTCATTAGACCAGCTACCAACACCAGTAAACGGTGTGTATTTCTTAATTCTTGCAGTCCTAATCTTTGGGGGGTCTTGGGCTTGCTGCAAAATCTTCCTCAGCTTGAAACTGCTGAAGGTTGGGATCAGGGTTGGGATGATGATTGGGATGAATAAAAATTCTGTGAAATCACCAGGGAGGCGTCATATTGGAAACATTTCACCAAATGGCCTTACTGCTAGGTCCAATAAAGATGGGTGGGAGATGATTGGGATGTTTAGTTAA

Coding sequence (CDS)

ATGGAGAGTGCGTGCTTTACACAAGCCCTCTTGTTTCTGGACAAGACACTTTTTCTGCGTCTCCCCTCATTAGACCAGCTACCAACACCAGTAAACGGTGTGTATTTCTTAATTCTTGCAGTCCTAATCTTTGGGGGGTCTTGGGCTTGCTGCAAAATCTTCCTCAGCTTGAAACTGCTGAAGGTTGGGATCAGGGTTGGGATGATGATTGGGATGAATAAAAATTCTGTGAAATCACCAGGGAGGCGTCATATTGGAAACATTTCACCAAATGGCCTTACTGCTAGGTCCAATAAAGATGGGTGGGAGATGATTGGGATGTTTAGTTAA

Protein sequence

MESACFTQALLFLDKTLFLRLPSLDQLPTPVNGVYFLILAVLIFGGSWACCKIFLSLKLLKVGIRVGMMIGMNKNSVKSPGRRHIGNISPNGLTARSNKDGWEMIGMFS

Homology

[Close]

BLAST of PI0013833 vs. ExPASy TrEMBL
Match: A0A0A0LD85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G728040 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.4e-35
Identity = 86/105 (81.90%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MESACFTQALLFLDKTLFLRLPSLDQLPTPVNGVYFLILAVLIFGGSWACC--KIFLSLK 60
           MESAC TQALLFLDKTLFLRLPSLDQL TPV G YFLILAVLI   SWACC  +IFLSL+
Sbjct: 1   MESACSTQALLFLDKTLFLRLPSLDQLATPVTGAYFLILAVLILRDSWACCNARIFLSLE 60

Query: 61  LLKVGIRVGMMIGMNKNSVKSPGRRHIGNISPNGLTARSNKDGWE 104
           LLK    VGMMIGMNKNSV SPGR HIGNIS N LTARSNKDGWE
Sbjct: 61  LLK----VGMMIGMNKNSVNSPGRPHIGNISANELTARSNKDGWE 101

[Close]

BLAST of PI0013833 vs. ExPASy TrEMBL
Match: A0A6J1F4I5 (uncharacterized protein LOC111442092 OS=Cucurbita moschata OX=3662 GN=LOC111442092 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 60/111 (54.05%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 15  KTLFLRLPSLDQLPTPVNGVYFLILAVLIFGGSWACCK-------------IFLSLKLLK 74
           + LFL LPS DQL TPVNG YFLILAVLIFGGSWACCK             + ++L    
Sbjct: 227 ENLFLHLPSFDQLATPVNGAYFLILAVLIFGGSWACCKFRRRQAGGIPYQELEMALPESS 286

Query: 75  VGIRVGMMIGMN---------KNSVKSPGRRHIGNISPNGLTARSNKDGWE 104
             + V    G +         +N+VKSPG RHIG+IS NGLTARSNKDGWE
Sbjct: 287 SAVNVETADGWDQGWDDDWDEENAVKSPGGRHIGSISANGLTARSNKDGWE 337

[Close]

BLAST of PI0013833 vs. ExPASy TrEMBL
Match: A0A6J1I2Q4 (uncharacterized protein LOC111470002 OS=Cucurbita maxima OX=3661 GN=LOC111470002 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.6e-18
Identity = 62/115 (53.91%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 11  LFLDKTLFLRLPSLDQLPTPVNGVYFLILAVLIFGGSWACCKI---------FLSLKL-- 70
           L   + LFL LPS DQL TPVNG YFLILAVLIFGGSWAC K+         +  L++  
Sbjct: 222 LVAGEDLFLHLPSFDQLVTPVNGAYFLILAVLIFGGSWACFKLRRRQAGGIPYQELEMAL 281

Query: 71  ------LKVGIRVGMMIGMN-----KNSVKSPGRRHIGNISPNGLTARSNKDGWE 104
                 +KV   VG   G +     +N+VKSPG RHIG+IS NGLTAR NKDGWE
Sbjct: 282 PESSSAVKVETAVGWDQGWDDDWDEENAVKSPGGRHIGSISANGLTARPNKDGWE 336

[Close]

BLAST of PI0013833 vs. ExPASy TrEMBL
Match: A0A6J1FLM5 (uncharacterized protein LOC111446930 OS=Cucurbita moschata OX=3662 GN=LOC111446930 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-17
Identity = 60/109 (55.05%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 17  LFLRLPSLDQLPTPVNGVYFLILAVLIFGGSWACCKI---------FLSLKL-------- 76
           LFL LPS DQL TPVNG YFLILAVLIFGGSWAC K+         +  L++        
Sbjct: 228 LFLHLPSFDQLVTPVNGAYFLILAVLIFGGSWACFKLRRRQAGGIPYQELEMALPESSSA 287

Query: 77  LKVGIRVGMMIGMN-----KNSVKSPGRRHIGNISPNGLTARSNKDGWE 104
           +KV    G   G +     +N+VKSPG RHIG+IS NGLTAR NKDGWE
Sbjct: 288 VKVETAEGWDQGWDDDWDEENAVKSPGGRHIGSISANGLTARPNKDGWE 336

[Close]

BLAST of PI0013833 vs. ExPASy TrEMBL
Match: A0A6J1J516 (uncharacterized protein LOC111481426 OS=Cucurbita maxima OX=3661 GN=LOC111481426 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 59/111 (53.15%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 15  KTLFLRLPSLDQLPTPVNGVYFLILAVLIFGGSWACCK-------------IFLSLKLLK 74
           + LFL LPS DQL TPVNG YFLILAVL FGGSWACCK             + ++L    
Sbjct: 226 ENLFLHLPSFDQLATPVNGAYFLILAVL-FGGSWACCKFRRRQAGGIPYQELEMALPESS 285

Query: 75  VGIRVGMMIGMN---------KNSVKSPGRRHIGNISPNGLTARSNKDGWE 104
             + V    G +         +N+VKSPG RHIG+IS NGLTARSNKDGWE
Sbjct: 286 SAVNVETADGWDQGWDDDWDEENAVKSPGGRHIGSISANGLTARSNKDGWE 335

[Close]

BLAST of PI0013833 vs. NCBI nr
Match: KAG7017185.1 (hypothetical protein SDJN02_19047 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-19
Identity = 60/111 (54.05%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 15  KTLFLRLPSLDQLPTPVNGVYFLILAVLIFGGSWACCK-------------IFLSLKLLK 74
           + LFL LPS DQL TPVNG YFLILAVLIFGGSWACCK             + ++L    
Sbjct: 227 ENLFLHLPSFDQLATPVNGAYFLILAVLIFGGSWACCKFRRRQAGGIPYQELEMALPESS 286

Query: 75  VGIRVGMMIGMN---------KNSVKSPGRRHIGNISPNGLTARSNKDGWE 104
             + V    G +         +N+VKSPG RHIG+IS NGLTARSNKDGWE
Sbjct: 287 SAVNVETADGWDQGWDDDWDEENAVKSPGGRHIGSISANGLTARSNKDGWE 337

[Close]

BLAST of PI0013833 vs. NCBI nr
Match: KAG6580427.1 (hypothetical protein SDJN03_20429, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-19
Identity = 60/111 (54.05%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 15  KTLFLRLPSLDQLPTPVNGVYFLILAVLIFGGSWACCK-------------IFLSLKLLK 74
           + LFL LPS DQL TPVNG YFLILAVLIFGGSWACCK             + ++L    
Sbjct: 253 ENLFLHLPSFDQLATPVNGAYFLILAVLIFGGSWACCKFRRRQAGGIPYQELEMALPESS 312

Query: 75  VGIRVGMMIGMN---------KNSVKSPGRRHIGNISPNGLTARSNKDGWE 104
             + V    G +         +N+VKSPG RHIG+IS NGLTARSNKDGWE
Sbjct: 313 SAVNVETADGWDQGWDDDWDEENAVKSPGGRHIGSISANGLTARSNKDGWE 363

[Close]

BLAST of PI0013833 vs. NCBI nr
Match: XP_022935129.1 (uncharacterized protein LOC111442092 [Cucurbita moschata])

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-19
Identity = 60/111 (54.05%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 15  KTLFLRLPSLDQLPTPVNGVYFLILAVLIFGGSWACCK-------------IFLSLKLLK 74
           + LFL LPS DQL TPVNG YFLILAVLIFGGSWACCK             + ++L    
Sbjct: 227 ENLFLHLPSFDQLATPVNGAYFLILAVLIFGGSWACCKFRRRQAGGIPYQELEMALPESS 286

Query: 75  VGIRVGMMIGMN---------KNSVKSPGRRHIGNISPNGLTARSNKDGWE 104
             + V    G +         +N+VKSPG RHIG+IS NGLTARSNKDGWE
Sbjct: 287 SAVNVETADGWDQGWDDDWDEENAVKSPGGRHIGSISANGLTARSNKDGWE 337

[Close]

BLAST of PI0013833 vs. NCBI nr
Match: XP_023528429.1 (uncharacterized protein LOC111791362 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 58/111 (52.25%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 15  KTLFLRLPSLDQLPTPVNGVYFLILAVLIFGGSWACCK-------------IFLSLKLLK 74
           + LFL LPS DQL TPVNG YFL LAVLIFGGSWACCK             + ++L    
Sbjct: 227 ENLFLHLPSFDQLATPVNGAYFLFLAVLIFGGSWACCKFRRRQAGGIPYQELEMALPESS 286

Query: 75  VGIRVGMMIGMN---------KNSVKSPGRRHIGNISPNGLTARSNKDGWE 104
             + +    G +         +N+VKSPG RHIG+IS NGLTARSNKDGWE
Sbjct: 287 SAVNIETADGWDQGWDDDWDEENAVKSPGGRHIGSISANGLTARSNKDGWE 337

[Close]

BLAST of PI0013833 vs. NCBI nr
Match: XP_038904076.1 (uncharacterized protein LOC120090465 [Benincasa hispida])

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-18
Identity = 59/109 (54.13%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 17  LFLRLPSLDQLPTPVNGVYFLILAVLIFGGSWACCK-------------IFLSLKLLKVG 76
           LFL LPS DQL TPVNG YFLILAVLIFGGSWA CK             + +++      
Sbjct: 225 LFLHLPSFDQLATPVNGAYFLILAVLIFGGSWASCKFRRRQAGGIPYQELEMAVPEFSSA 284

Query: 77  IRVGMMIGMN---------KNSVKSPGRRHIGNISPNGLTARSNKDGWE 104
           + +    G +         +NSVKSPG RHIGNIS NGLTARSNKDGWE
Sbjct: 285 VNLETAEGWDQGWDDDWDEENSVKSPGGRHIGNISANGLTARSNKDGWE 333

[Close]

BLAST of PI0013833 vs. TAIR 10
Match: AT3G51580.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to 1607 proteins in 294 species: Archae - 2; Bacteria - 552; Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38; Other Eukaryotes - 253 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-08
Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 0


Query: 14  DKTLFLRLPSLDQLPTPVNGVYFLILAVLIFGGSWACCKIFLSLKL----------LKVG 73
           + TL    PS ++L TP+NG YFLI++V+IFGG WA C    + +           L  G
Sbjct: 267 ESTLPFHFPSYEKLVTPINGAYFLIVSVIIFGGIWAFCLCRKNRRAGSGVPYRELELSGG 326

Query: 74  IRVGMMIGMN-----------------KNSVKSPGRRHIG-NISPNGLTARS-NKDGWE 104
             +    G++                  N+VKSPG      +IS NGLTAR+ N+DGW+
Sbjct: 327 PGLENESGVHDVETADWDEGWDDDWDENNAVKSPGSAAKSVSISANGLTARAPNRDGWD 385

[Close]

BLAST of PI0013833 vs. TAIR 10
Match: AT3G51580.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. )

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-08
Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 0


Query: 14  DKTLFLRLPSLDQLPTPVNGVYFLILAVLIFGGSWACCKIFLSLKL----------LKVG 73
           + TL    PS ++L TP+NG YFLI++V+IFGG WA C    + +           L  G
Sbjct: 287 ESTLPFHFPSYEKLVTPINGAYFLIVSVIIFGGIWAFCLCRKNRRAGSGVPYRELELSGG 346

Query: 74  IRVGMMIGMN-----------------KNSVKSPGRRHIG-NISPNGLTARS-NKDGWE 104
             +    G++                  N+VKSPG      +IS NGLTAR+ N+DGW+
Sbjct: 347 PGLENESGVHDVETADWDEGWDDDWDENNAVKSPGSAAKSVSISANGLTARAPNRDGWD 405

The following BLAST results are available for this feature:

BLAST of PI0013833 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013833 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD85	2.4e-35	81.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G728040 PE=4 SV=1	[more]
A0A6J1F4I5	2.4e-19	54.05	uncharacterized protein LOC111442092 OS=Cucurbita moschata OX=3662 GN=LOC1114420...	[more]
A0A6J1I2Q4	2.6e-18	53.91	uncharacterized protein LOC111470002 OS=Cucurbita maxima OX=3661 GN=LOC111470002...	[more]
A0A6J1FLM5	1.3e-17	55.05	uncharacterized protein LOC111446930 OS=Cucurbita moschata OX=3662 GN=LOC1114469...	[more]
A0A6J1J516	1.7e-17	53.15	uncharacterized protein LOC111481426 OS=Cucurbita maxima OX=3661 GN=LOC111481426...	[more]

BLAST of PI0013833 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017185.1	4.9e-19	54.05	hypothetical protein SDJN02_19047 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6580427.1	4.9e-19	54.05	hypothetical protein SDJN03_20429, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022935129.1	4.9e-19	54.05	uncharacterized protein LOC111442092 [Cucurbita moschata]	[more]
XP_023528429.1	1.9e-18	52.25	uncharacterized protein LOC111791362 [Cucurbita pepo subsp. pepo]	[more]
XP_038904076.1	4.2e-18	54.13	uncharacterized protein LOC120090465 [Benincasa hispida]	[more]

BLAST of PI0013833 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51580.1	4.2e-08	35.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G51580.2	4.2e-08	35.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34200:SF2	TRANSMEMBRANE PROTEIN	coord: 74..103
None	No IPR available	PANTHER	PTHR34200	DENTIN SIALOPHOSPHOPROTEIN-LIKE ISOFORM X1	coord: 13..53 coord: 74..103
None	No IPR available	PANTHER	PTHR34200:SF2	TRANSMEMBRANE PROTEIN	coord: 13..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013833.1	PI0013833.1	mRNA