PI0013766 (gene) Melon (PI 482460) v1

Overview


Name	PI0013766
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr01: 19079771 .. 19079983 (+)
RNA-Seq Expression	PI0013766
Synteny	PI0013766

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAACAACAACTAGAAGAAAGAATGACATCCACAGAGAAAGAGATAGTGGACTTGAAAGAGATACTGCTAGGATTGAAAATGAGCATTGACCGCCTTGCAAAAGACATGAAGGAAAATAGTTATACGCGGAAGAAGGAAGAATCAGGGACATCTAATACCTCTGTGCTGAAGCTGAAGGGGAAGGTAGAGGATGTGGATACTGCTTAA

mRNA sequence

ATGGCACAACAACAACTAGAAGAAAGAATGACATCCACAGAGAAAGAGATAGTGGACTTGAAAGAGATACTGCTAGGATTGAAAATGAGCATTGACCGCCTTGCAAAAGACATGAAGGAAAATAGTTATACGCGGAAGAAGGAAGAATCAGGGACATCTAATACCTCTGTGCTGAAGCTGAAGGGGAAGGTAGAGGATGTGGATACTGCTTAA

Coding sequence (CDS)

ATGGCACAACAACAACTAGAAGAAAGAATGACATCCACAGAGAAAGAGATAGTGGACTTGAAAGAGATACTGCTAGGATTGAAAATGAGCATTGACCGCCTTGCAAAAGACATGAAGGAAAATAGTTATACGCGGAAGAAGGAAGAATCAGGGACATCTAATACCTCTGTGCTGAAGCTGAAGGGGAAGGTAGAGGATGTGGATACTGCTTAA

Protein sequence

MAQQQLEERMTSTEKEIVDLKEILLGLKMSIDRLAKDMKENSYTRKKEESGTSNTSVLKLKGKVEDVDTA

Homology

[Close]

BLAST of PI0013766 vs. ExPASy TrEMBL
Match: A0A5D3DXK6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003260 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 40/68 (58.82%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MAQQQLEERMTSTEKEIVDLKEILLGLKMSIDRLAKDMKENSYTRKKEESGTSNTSVLKL 60
          MAQQQ+EER+  TEKE++ LKE++L +K S+DRLA +++EN   +KKEESGTSN S++K+
Sbjct: 1  MAQQQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSNESIMKM 60

Query: 61 KGKVEDVD 69
          KGK+E+ D
Sbjct: 61 KGKMEETD 68

[Close]

BLAST of PI0013766 vs. ExPASy TrEMBL
Match: A0A5A7TII1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001860 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 38/68 (55.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MAQQQLEERMTSTEKEIVDLKEILLGLKMSIDRLAKDMKENSYTRKKEESGTSNTSVLKL 60
          MAQ+Q+EER+  TEKE++ LKE++L +K S+DRLA +++EN   +KKEESGTS+ S++K+
Sbjct: 1  MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKM 60

Query: 61 KGKVEDVD 69
          KGK+E+ D
Sbjct: 61 KGKMEETD 68

[Close]

BLAST of PI0013766 vs. ExPASy TrEMBL
Match: A0A5D3CXP0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00230 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 38/68 (55.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MAQQQLEERMTSTEKEIVDLKEILLGLKMSIDRLAKDMKENSYTRKKEESGTSNTSVLKL 60
          MAQ+Q+EER+  TEKE++ LKE++L +K S+DRLA +++EN   +KKEESGTS+ S++K+
Sbjct: 1  MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKM 60

Query: 61 KGKVEDVD 69
          KGK+E+ D
Sbjct: 61 KGKMEETD 68

[Close]

BLAST of PI0013766 vs. ExPASy TrEMBL
Match: A0A5A7V689 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00280 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.4e-11
Identity = 39/68 (57.35%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MAQQQLEERMTSTEKEIVDLKEILLGLKMSIDRLAKDMKENSYTRKKEESGTSNTSVLKL 60
           MAQ+Q+EER+  TEKEI+ LKE++L +K +++RLA +MKE+   +KKEESGTSN SV+K+
Sbjct: 88  MAQRQMEERVDGTEKEIMGLKEMMLEMKKAVERLADEMKESQSYKKKEESGTSNGSVMKM 147

Query: 61  KGKVEDVD 69
           KGK+E+ +
Sbjct: 148 KGKMEETE 155

[Close]

BLAST of PI0013766 vs. ExPASy TrEMBL
Match: A0A5A7TYN3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00710 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-11
Identity = 39/68 (57.35%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MAQQQLEERMTSTEKEIVDLKEILLGLKMSIDRLAKDMKENSYTRKKEESGTSNTSVLKL 60
          MAQ+Q+EER+  TEKE++ LKE++L +K S+DRLA ++++ SY +KKEESGTS+ SV+K+
Sbjct: 1  MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRDQSY-KKKEESGTSDGSVMKM 60

Query: 61 KGKVEDVD 69
          KGK+E+ D
Sbjct: 61 KGKMEETD 67

[Close]

BLAST of PI0013766 vs. NCBI nr
Match: KAA0063363.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK28065.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 2.2e-12
Identity = 40/68 (58.82%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MAQQQLEERMTSTEKEIVDLKEILLGLKMSIDRLAKDMKENSYTRKKEESGTSNTSVLKL 60
          MAQQQ+EER+  TEKE++ LKE++L +K S+DRLA +++EN   +KKEESGTSN S++K+
Sbjct: 1  MAQQQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSNESIMKM 60

Query: 61 KGKVEDVD 69
          KGK+E+ D
Sbjct: 61 KGKMEETD 68

[Close]

BLAST of PI0013766 vs. NCBI nr
Match: KAA0041225.1 (uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-11
Identity = 38/68 (55.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MAQQQLEERMTSTEKEIVDLKEILLGLKMSIDRLAKDMKENSYTRKKEESGTSNTSVLKL 60
          MAQ+Q+EER+  TEKE++ LKE++L +K S+DRLA +++EN   +KKEESGTS+ S++K+
Sbjct: 1  MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKM 60

Query: 61 KGKVEDVD 69
          KGK+E+ D
Sbjct: 61 KGKMEETD 68

[Close]

BLAST of PI0013766 vs. NCBI nr
Match: TYK16028.1 (uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-11
Identity = 38/68 (55.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MAQQQLEERMTSTEKEIVDLKEILLGLKMSIDRLAKDMKENSYTRKKEESGTSNTSVLKL 60
          MAQ+Q+EER+  TEKE++ LKE++L +K S+DRLA +++EN   +KKEESGTS+ S++K+
Sbjct: 1  MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKM 60

Query: 61 KGKVEDVD 69
          KGK+E+ D
Sbjct: 61 KGKMEETD 68

[Close]

BLAST of PI0013766 vs. NCBI nr
Match: KAA0063772.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05524.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 7.1e-11
Identity = 39/68 (57.35%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MAQQQLEERMTSTEKEIVDLKEILLGLKMSIDRLAKDMKENSYTRKKEESGTSNTSVLKL 60
           MAQ+Q+EER+  TEKEI+ LKE++L +K +++RLA +MKE+   +KKEESGTSN SV+K+
Sbjct: 88  MAQRQMEERVDGTEKEIMGLKEMMLEMKKAVERLADEMKESQSYKKKEESGTSNGSVMKM 147

Query: 61  KGKVEDVD 69
           KGK+E+ +
Sbjct: 148 KGKMEETE 155

[Close]

BLAST of PI0013766 vs. NCBI nr
Match: KAA0056659.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 38/68 (55.88%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MAQQQLEERMTSTEKEIVDLKEILLGLKMSIDRLAKDMKENSYTRKKEESGTSNTSVLKL 60
          MAQ+Q+EER+  TEKE++ LKE++L +K S+DRLA ++++ SY +KKEESGTS+ S++K+
Sbjct: 1  MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRDQSY-KKKEESGTSDRSIMKM 60

Query: 61 KGKVEDVD 69
          KGK+E+ D
Sbjct: 61 KGKMEETD 67

The following BLAST results are available for this feature:

BLAST of PI0013766 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013766 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DXK6	1.1e-12	58.82	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TII1	1.5e-11	55.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CXP0	1.5e-11	55.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V689	3.4e-11	57.35	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TYN3	5.8e-11	57.35	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of PI0013766 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063363.1	2.2e-12	58.82	retrotransposon protein [Cucumis melo var. makuwa] >TYK28065.1 retrotransposon p...	[more]
KAA0041225.1	3.2e-11	55.88	uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]	[more]
TYK16028.1	3.2e-11	55.88	uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa]	[more]
KAA0063772.1	7.1e-11	57.35	retrotransposon protein [Cucumis melo var. makuwa] >TYK05524.1 retrotransposon p...	[more]
KAA0056659.1	1.2e-10	55.88	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0013766 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013766.1	PI0013766.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003723	RNA binding