PI0013730 (gene) Melon (PI 482460) v1

Overview


Name	PI0013730
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr01: 22926106 .. 22927942 (-)
RNA-Seq Expression	PI0013730
Synteny	PI0013730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGCCATCCATCCCTCCCTATTTTTTTTACAAAGGAAAAGATTAAAAATGAAGATTAGGTCACGCAAATGGAGTCTCTCAAAGCATAAATACAAAACCACAAATCAAATGTCACTCATCAAATTTGGCTTCAAAGACGCTGCCACCTCCAATTTCGCCGGAAAACTTCAATACAATGCTTTCCTTTCAACACCGTCTTCAAACCTTTCTACAGAATTGCAGATCTGGTAAGATTACCTTAAATGAAGCATTAGATTTCTTTCAACAAATGATGTGTTCAAATCCTACCCCTCCCATTTCTTCTTTCAATCATTTACTTGCCGGACTTACTAAGATTAAGCATTACTCTCAAGTCTTTTCGCTCTATAATCTAATGCGCCTAGCTGGACTTTTCCCTGATTGCTACACATTCAATATCTTGATTAATTGCCTTTGTAATGTGAATCGGATAAACGAAGGTCTTGCGGCCATGGCGGGGATTATGAGGAGAGGTTACTTTCCTAATATAGTTACATATAGTACCTTGATTAAGGGATTGTGTATGGAGCATAGGATTAGTGAAGCTTCACTGCTATTTAGGAGAATGCAAAAGTTAGGTTGTAGGCCTAATGTGATTACTTATGGGACTTTAATGAAGGGGCTCTGTCAAACGGGGAATATTAACATTGCACTTGATTTACATCAAGAAATGCTTAATGACAATAGTCAATATGGGATTAAATGTAAACCTACTGTTATTTCCTATAATATCGTTATAGATGGACTTTGCAAGGATAAACGGGAAGACGAGGCAATAGAACTTTTCAAGGAAATGAAAGCTCAGGGGATGATGCCCGATGTCATTTCATATACCTCTTTGATTCATGGATTTTGCCGTAGTGGAAAGTGGGAAAAGGCTAAATGTTTGTTCAATGAGATGCTGGATATAGGTGTTCAACCAAATGTGACTACGTTTAGTGTGTTGATTGATATGCTTTGCAAGGAAGGAAAGGCTATTGAGGCTAAGGAGTTGCTAGAGGTGATGATTCAGAGAGGTTACATTCCTGATGTAATGACATATACTTCCGTGGTTAAAGGGTTGTGTATGAAGCAAAGGATTAGTGAAGCCACACAGTTATTTCTGAAAATGCAAAAGTTAGGTTGTATGCCTAATGTAGTTACGTGTGGGACTTTAATGAAGGGGCTCTGTCAAAGCGGGAATATTAAAATTGCACTTGAGTTGCATAAAAATATGCTTAGTGACACTGGTCCATATGGGATTAATTGTAAGCCTAATGCTATTTCCTATAGTATCATCATAGATGGGCTTTGTAAGGATGGTCGGGAAGATGAGGCAAGAGAACTTTTCAAGGAAATGAAAGCTCAGGGAATGATACCCGACGTCATTTCATATACCTCTTTGATTCATGGATTTTGTCGTTGTGGAAAGTGGGAGGAGGCTAAATGTTTGTTCAATGAGATGGTGGATATAGGTATTCGACCTAATGTGACTACGTTCAGTGTGTTGATTGATAGGCTTTGCGAGGAAGGAAAGGTTATTGAGGCTAACGAGTTGCTAGAGGTGATGATTCAAAGAGGTTGCATTCCTGATATAGTGACATATACTACCTTGGTTAAAGGGTTGTGTATGAAGCATAGGATTAGTGAAGCCACACAGTTGTTTATGAAAATGCAAAAGTTAGGTTATATGCCTGATGTAGTTACTTATGGGACTTTAATGAAGGGACTCTGTCAAACAGGGAGTATTAAAATTGCATTTGAGTTGCATAAAAAAATGCTCAGTGACACTGGTCCATATGGGATTAATTGTAAGCCTGATGCTATTTCCTATAGTATAA

mRNA sequence

TAGCCATCCATCCCTCCCTATTTTTTTTACAAAGGAAAAGATTAAAAATGAAGATTAGGTCACGCAAATGGAGTCTCTCAAAGCATAAATACAAAACCACAAATCAAATGTCACTCATCAAATTTGGCTTCAAAGACGCTGCCACCTCCAATTTCGCCGGAAAACTTCAATACAATGCTTTCCTTTCAACACCGTCTTCAAACCTTTCTACAGAATTGCAGATCTGGTAAGATTACCTTAAATGAAGCATTAGATTTCTTTCAACAAATGATGTGTTCAAATCCTACCCCTCCCATTTCTTCTTTCAATCATTTACTTGCCGGACTTACTAAGATTAAGCATTACTCTCAAGTCTTTTCGCTCTATAATCTAATGCGCCTAGCTGGACTTTTCCCTGATTGCTACACATTCAATATCTTGATTAATTGCCTTTGTAATGTGAATCGGATAAACGAAGGTCTTGCGGCCATGGCGGGGATTATGAGGAGAGGTTACTTTCCTAATATAGTTACATATAGTACCTTGATTAAGGGATTGTGTATGGAGCATAGGATTAGTGAAGCTTCACTGCTATTTAGGAGAATGCAAAAGTTAGGTTGTAGGCCTAATGTGATTACTTATGGGACTTTAATGAAGGGGCTCTTATTAAAATTGCATTTGAGTTGCATAAAAAAATGCTCAGTGACACTGGTCCATATGGGATTAATTGTAAGCCTGATGCTATTTCCTATAGTATAA

Coding sequence (CDS)

ATGCTTTCCTTTCAACACCGTCTTCAAACCTTTCTACAGAATTGCAGATCTGGTAAGATTACCTTAAATGAAGCATTAGATTTCTTTCAACAAATGATGTGTTCAAATCCTACCCCTCCCATTTCTTCTTTCAATCATTTACTTGCCGGACTTACTAAGATTAAGCATTACTCTCAAGTCTTTTCGCTCTATAATCTAATGCGCCTAGCTGGACTTTTCCCTGATTGCTACACATTCAATATCTTGATTAATTGCCTTTGTAATGTGAATCGGATAAACGAAGGTCTTGCGGCCATGGCGGGGATTATGAGGAGAGGTTACTTTCCTAATATAGTTACATATAGTACCTTGATTAAGGGATTGTGTATGGAGCATAGGATTAGTGAAGCTTCACTGCTATTTAGGAGAATGCAAAAGTTAGGTTGTAGGCCTAATGTGATTACTTATGGGACTTTAATGAAGGGGCTCTTATTAAAATTGCATTTGAGTTGCATAAAAAAATGCTCAGTGACACTGGTCCATATGGGATTAATTGTAAGCCTGATGCTATTTCCTATAGTATAA

Protein sequence

MLSFQHRLQTFLQNCRSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQVFSLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKGLCMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGLLLKLHLSCIKKCSVTLVHMGLIVSLMLFPIV

Homology

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BLAST of PI0013730 vs. ExPASy Swiss-Prot
Match: Q0WKV3 (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12300 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-26
Identity = 61/158 (38.61%), Postives = 96/158 (60.76%), Query Frame = 0


Query: 3   SFQHRLQTFLQNCRSGKITL--NEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQV 62
           +F  R  ++ +  RSG + +  ++A+D F+ M+ S P P +  F+ L + + K K Y  V
Sbjct: 48  AFSDRNLSYRERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLV 107

Query: 63  FSLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKG 122
            +L   M L G+  + YT +I+INC C   ++    +AM  I++ GY PN +T+STLI G
Sbjct: 108 LALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLING 167

Query: 123 LCMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGLLL 159
           LC+E R+SEA  L  RM ++G +P++IT  TL+ GL L
Sbjct: 168 LCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205

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BLAST of PI0013730 vs. ExPASy Swiss-Prot
Match: Q9ASZ8 (Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX=3702 GN=At1g12620 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-24
Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 0


Query: 10  TFLQNCRSGKITLNE--ALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQVFSLYNLM 69
           ++ +  RSG + + E  A+D FQ+M  S P P +  F+ L + + + K Y  V  L   M
Sbjct: 39  SYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQM 98

Query: 70  RLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKGLCMEHRI 129
            L G+  + YT +I+INC C   +++   +AM  I++ GY P+ VT+STLI GLC+E R+
Sbjct: 99  ELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRV 158

Query: 130 SEASLLFRRMQKLGCRPNVITYGTLMKGLLL 159
           SEA  L  RM ++G +P +IT   L+ GL L
Sbjct: 159 SEALELVDRMVEMGHKPTLITLNALVNGLCL 189

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BLAST of PI0013730 vs. ExPASy Swiss-Prot
Match: Q9LPX2 (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.0e-24
Identity = 57/158 (36.08%), Postives = 90/158 (56.96%), Query Frame = 0


Query: 3   SFQHRLQTFLQNCRSGKITL--NEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQV 62
           +F  R  ++     SG + +  ++A+D F+ M+ S P P +  FN L + + K K Y  V
Sbjct: 48  TFSDRNLSYRDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELV 107

Query: 63  FSLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKG 122
            +L   M   G+    YT +I+INC C   +++   + M  IM+ GY P+ V ++TL+ G
Sbjct: 108 LALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNG 167

Query: 123 LCMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGLLL 159
           LC+E R+SEA  L  RM ++G +P +IT  TL+ GL L
Sbjct: 168 LCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205

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BLAST of PI0013730 vs. ExPASy Swiss-Prot
Match: Q9CAM8 (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX=3702 GN=At1g63150 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.1e-24
Identity = 58/147 (39.46%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 12  LQNCRSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQVFSLYNLMRLAG 71
           L+N  S  I +++A+D F  M+ S P P I  FN LL+ + K+  +  V SL   M+  G
Sbjct: 54  LRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLG 113

Query: 72  LFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKGLCMEHRISEAS 131
           +  D YT++I INC C  ++++  LA +A +M+ GY P+IVT S+L+ G C   RIS+A 
Sbjct: 114 ISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAV 173

Query: 132 LLFRRMQKLGCRPNVITYGTLMKGLLL 159
            L  +M ++G +P+  T+ TL+ GL L
Sbjct: 174 ALVDQMVEMGYKPDTFTFTTLIHGLFL 200

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BLAST of PI0013730 vs. ExPASy Swiss-Prot
Match: Q9SI78 (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana OX=3702 GN=At1g62720 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.1e-24
Identity = 52/140 (37.14%), Postives = 88/140 (62.86%), Query Frame = 0


Query: 16  RSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQVFSLYNLMRLAGLFPD 75
           +   + L E +D F +M+ S P P I  F+ +L+ + K K+Y  V SL++ M + G+  D
Sbjct: 44  KRSSMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHD 103

Query: 76  CYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKGLCMEHRISEASLLFR 135
            Y++NI+INCLC  +R    L+ +  +M+ GY P++VT S+LI G C  +R+ +A  L  
Sbjct: 104 LYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVS 163

Query: 136 RMQKLGCRPNVITYGTLMKG 156
           +M+++G RP+V+ Y T++ G
Sbjct: 164 KMEEMGFRPDVVIYNTIIDG 183

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BLAST of PI0013730 vs. ExPASy TrEMBL
Match: A0A1S4DYM0 (pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492587 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 5.1e-70
Identity = 133/163 (81.60%), Postives = 145/163 (88.96%), Query Frame = 0


Query: 1   MLSFQHRLQTFLQNCRSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQV 60
           MLSFQHRL TFLQNCRSGKITLNEALDFFQ MMCSNPTPP+SSFN LL+GLTKIKHYSQV
Sbjct: 1   MLSFQHRLHTFLQNCRSGKITLNEALDFFQLMMCSNPTPPLSSFNQLLSGLTKIKHYSQV 60

Query: 61  FSLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKG 120
            SLYNLMRLAGL P+ +TFN LINCLCNVNR+NEGLAAMAGIM RGY P+IV YSTLIKG
Sbjct: 61  ISLYNLMRLAGLVPNFFTFNTLINCLCNVNRVNEGLAAMAGIMTRGYIPDIVIYSTLIKG 120

Query: 121 LCMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGLLLKLHLS 164
           LCMEHRISEA+ LF  MQKLGCRP+ ITY TL+KGL ++  +S
Sbjct: 121 LCMEHRISEATRLFMGMQKLGCRPDAITYSTLIKGLCMEHRIS 163

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BLAST of PI0013730 vs. ExPASy TrEMBL
Match: A0A5A7UYB2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00430 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 5.1e-70
Identity = 133/163 (81.60%), Postives = 145/163 (88.96%), Query Frame = 0


Query: 1   MLSFQHRLQTFLQNCRSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQV 60
           MLSFQHRL TFLQNCRSGKITLNEALDFFQ MMCSNPTPP+SSFN LL+GLTKIKHYSQV
Sbjct: 1   MLSFQHRLHTFLQNCRSGKITLNEALDFFQLMMCSNPTPPLSSFNQLLSGLTKIKHYSQV 60

Query: 61  FSLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKG 120
            SLYNLMRLAGL P+ +TFN LINCLCNVNR+NEGLAAMAGIM RGY P+IV YSTLIKG
Sbjct: 61  ISLYNLMRLAGLVPNFFTFNTLINCLCNVNRVNEGLAAMAGIMTRGYIPDIVIYSTLIKG 120

Query: 121 LCMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGLLLKLHLS 164
           LCMEHRISEA+ LF  MQKLGCRP+ ITY TL+KGL ++  +S
Sbjct: 121 LCMEHRISEATWLFMGMQKLGCRPDAITYSTLIKGLCMEHRIS 163

[Close]

BLAST of PI0013730 vs. ExPASy TrEMBL
Match: A0A1S4DYL3 (pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492587 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.9e-61
Identity = 119/176 (67.61%), Postives = 138/176 (78.41%), Query Frame = 0


Query: 2   LSFQHRLQTFLQNCRSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQVF 61
           +S Q +L  FL NC++G IT  +A  FF  MMCSNPTPP+SSF HLL+GLTKIKHYSQVF
Sbjct: 57  ISCQQQLSMFLHNCKTGNITATQAFHFFHLMMCSNPTPPLSSFTHLLSGLTKIKHYSQVF 116

Query: 62  SLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKGL 121
            LYN MRL+GL PDC T NIL+NCLCN+NR+ EGLA MAGI+RRGY P+IVTY+TLIKGL
Sbjct: 117 YLYNQMRLSGLSPDCCTLNILLNCLCNLNRVGEGLAVMAGILRRGYVPDIVTYTTLIKGL 176

Query: 122 CMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGL--------LLKLHLSCIKKCS 170
           CMEHRIS+A+LLF RMQKLGC PN ITYGTL+KGL         LKLH   + + S
Sbjct: 177 CMEHRISKATLLFTRMQKLGCTPNAITYGTLIKGLCRTGNIDVALKLHQEMLNETS 232

[Close]

BLAST of PI0013730 vs. ExPASy TrEMBL
Match: A0A5D3CCW0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00420 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.3e-61
Identity = 118/168 (70.24%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 2   LSFQHRLQTFLQNCRSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQVF 61
           +S Q +L  FL NC++G IT  +A  FF  MMCSNPTPP+SSF HLL+GLTKIKHYSQVF
Sbjct: 57  ISCQQQLSMFLHNCKTGNITATQAFHFFHLMMCSNPTPPLSSFTHLLSGLTKIKHYSQVF 116

Query: 62  SLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKGL 121
            LYN MRL+GL PDC T NIL+NCLCN+NR+ EGLA MAGI+RRGY P+IVTY+TLIKGL
Sbjct: 117 YLYNQMRLSGLSPDCCTLNILLNCLCNLNRVGEGLAVMAGILRRGYVPDIVTYTTLIKGL 176

Query: 122 CMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGL--------LLKLH 162
           CMEHRIS+A+LLF RMQKLGC PN ITYGTL+KGL         LKLH
Sbjct: 177 CMEHRISKATLLFTRMQKLGCTPNAITYGTLIKGLCRTGNIDVALKLH 224

[Close]

BLAST of PI0013730 vs. ExPASy TrEMBL
Match: A0A6J1JSG4 (pentatricopeptide repeat-containing protein At1g63330-like OS=Cucurbita maxima OX=3661 GN=LOC111488506 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 4.5e-58
Identity = 117/168 (69.64%), Postives = 134/168 (79.76%), Query Frame = 0


Query: 2   LSFQHRLQTFLQNCRSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQVF 61
           +SF  RL+TFLQNC++G  T++EAL FF  MM +NPTP +SSFN LL GL K KHYS+V 
Sbjct: 73  ISFHERLRTFLQNCKTGNFTVSEALQFFDLMMLANPTPAMSSFNLLLGGLAKTKHYSEVL 132

Query: 62  SLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKGL 121
            LY  M LAGL P+  T NIL+NCLCNVNRI+EGLAAMAGI+RRGY PNIVTY++LIKGL
Sbjct: 133 KLYYRMSLAGLLPNYITLNILLNCLCNVNRISEGLAAMAGIIRRGYVPNIVTYTSLIKGL 192

Query: 122 CMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGL--------LLKLH 162
           CMEHRISEA+ LF RMQKLGCRPNVITYGTL+KGL         LKLH
Sbjct: 193 CMEHRISEATRLFMRMQKLGCRPNVITYGTLIKGLCQTGNTNIALKLH 240

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BLAST of PI0013730 vs. NCBI nr
Match: KAE8646288.1 (hypothetical protein Csa_016114 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 4.7e-70
Identity = 141/194 (72.68%), Postives = 154/194 (79.38%), Query Frame = 0


Query: 1   MLSFQHRLQTFLQNCRSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQV 60
           MLSF H L TFLQNCRSGKITLNEALDFFQ MM SNP PP+SSFNHLL+GLTKI+HYSQV
Sbjct: 1   MLSFPHPLHTFLQNCRSGKITLNEALDFFQLMMRSNPIPPVSSFNHLLSGLTKIRHYSQV 60

Query: 61  FSLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKG 120
           FSLYN MRLAGLFPD +TFNILINCLCNV R+NEGLAAMAGIMRRGY P+IVTYSTLIKG
Sbjct: 61  FSLYNQMRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSTLIKG 120

Query: 121 LCMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGL--------LLKLHLSCIK------ 180
           LCMEHRISEA+ LF  MQKLGCRP+ ITYGTLMKGL         L+LH   +       
Sbjct: 121 LCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYG 180

[Close]

BLAST of PI0013730 vs. NCBI nr
Match: KAA0059627.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08160.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.9 bits (699), Expect = 1.1e-69
Identity = 133/163 (81.60%), Postives = 145/163 (88.96%), Query Frame = 0


Query: 1   MLSFQHRLQTFLQNCRSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQV 60
           MLSFQHRL TFLQNCRSGKITLNEALDFFQ MMCSNPTPP+SSFN LL+GLTKIKHYSQV
Sbjct: 1   MLSFQHRLHTFLQNCRSGKITLNEALDFFQLMMCSNPTPPLSSFNQLLSGLTKIKHYSQV 60

Query: 61  FSLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKG 120
            SLYNLMRLAGL P+ +TFN LINCLCNVNR+NEGLAAMAGIM RGY P+IV YSTLIKG
Sbjct: 61  ISLYNLMRLAGLVPNFFTFNTLINCLCNVNRVNEGLAAMAGIMTRGYIPDIVIYSTLIKG 120

Query: 121 LCMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGLLLKLHLS 164
           LCMEHRISEA+ LF  MQKLGCRP+ ITY TL+KGL ++  +S
Sbjct: 121 LCMEHRISEATWLFMGMQKLGCRPDAITYSTLIKGLCMEHRIS 163

[Close]

BLAST of PI0013730 vs. NCBI nr
Match: XP_016901059.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 [Cucumis melo] >XP_016901060.1 PREDICTED: pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 [Cucumis melo] >XP_016901061.1 PREDICTED: pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 [Cucumis melo] >XP_016901062.1 PREDICTED: pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 [Cucumis melo] >XP_016901063.1 PREDICTED: pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 [Cucumis melo] >XP_016901064.1 PREDICTED: pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 [Cucumis melo] >XP_016901065.1 PREDICTED: pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 [Cucumis melo] >XP_016901066.1 PREDICTED: pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 [Cucumis melo] >XP_016901067.1 PREDICTED: pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 [Cucumis melo] >XP_016901068.1 PREDICTED: pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 [Cucumis melo] >XP_016901069.1 PREDICTED: pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 [Cucumis melo] >XP_016901070.1 PREDICTED: pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 1.1e-69
Identity = 133/163 (81.60%), Postives = 145/163 (88.96%), Query Frame = 0


Query: 1   MLSFQHRLQTFLQNCRSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQV 60
           MLSFQHRL TFLQNCRSGKITLNEALDFFQ MMCSNPTPP+SSFN LL+GLTKIKHYSQV
Sbjct: 1   MLSFQHRLHTFLQNCRSGKITLNEALDFFQLMMCSNPTPPLSSFNQLLSGLTKIKHYSQV 60

Query: 61  FSLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKG 120
            SLYNLMRLAGL P+ +TFN LINCLCNVNR+NEGLAAMAGIM RGY P+IV YSTLIKG
Sbjct: 61  ISLYNLMRLAGLVPNFFTFNTLINCLCNVNRVNEGLAAMAGIMTRGYIPDIVIYSTLIKG 120

Query: 121 LCMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGLLLKLHLS 164
           LCMEHRISEA+ LF  MQKLGCRP+ ITY TL+KGL ++  +S
Sbjct: 121 LCMEHRISEATRLFMGMQKLGCRPDAITYSTLIKGLCMEHRIS 163

[Close]

BLAST of PI0013730 vs. NCBI nr
Match: XP_016901072.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X3 [Cucumis melo])

HSP 1 Score: 245.4 bits (625), Expect = 4.0e-61
Identity = 119/176 (67.61%), Postives = 138/176 (78.41%), Query Frame = 0


Query: 2   LSFQHRLQTFLQNCRSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQVF 61
           +S Q +L  FL NC++G IT  +A  FF  MMCSNPTPP+SSF HLL+GLTKIKHYSQVF
Sbjct: 57  ISCQQQLSMFLHNCKTGNITATQAFHFFHLMMCSNPTPPLSSFTHLLSGLTKIKHYSQVF 116

Query: 62  SLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKGL 121
            LYN MRL+GL PDC T NIL+NCLCN+NR+ EGLA MAGI+RRGY P+IVTY+TLIKGL
Sbjct: 117 YLYNQMRLSGLSPDCCTLNILLNCLCNLNRVGEGLAVMAGILRRGYVPDIVTYTTLIKGL 176

Query: 122 CMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGL--------LLKLHLSCIKKCS 170
           CMEHRIS+A+LLF RMQKLGC PN ITYGTL+KGL         LKLH   + + S
Sbjct: 177 CMEHRISKATLLFTRMQKLGCTPNAITYGTLIKGLCRTGNIDVALKLHQEMLNETS 232

[Close]

BLAST of PI0013730 vs. NCBI nr
Match: KAA0059626.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08159.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 244.2 bits (622), Expect = 8.9e-61
Identity = 118/168 (70.24%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 2   LSFQHRLQTFLQNCRSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQVF 61
           +S Q +L  FL NC++G IT  +A  FF  MMCSNPTPP+SSF HLL+GLTKIKHYSQVF
Sbjct: 57  ISCQQQLSMFLHNCKTGNITATQAFHFFHLMMCSNPTPPLSSFTHLLSGLTKIKHYSQVF 116

Query: 62  SLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKGL 121
            LYN MRL+GL PDC T NIL+NCLCN+NR+ EGLA MAGI+RRGY P+IVTY+TLIKGL
Sbjct: 117 YLYNQMRLSGLSPDCCTLNILLNCLCNLNRVGEGLAVMAGILRRGYVPDIVTYTTLIKGL 176

Query: 122 CMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGL--------LLKLH 162
           CMEHRIS+A+LLF RMQKLGC PN ITYGTL+KGL         LKLH
Sbjct: 177 CMEHRISKATLLFTRMQKLGCTPNAITYGTLIKGLCRTGNIDVALKLH 224

[Close]

BLAST of PI0013730 vs. TAIR 10
Match: AT1G12300.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 121.3 bits (303), Expect = 8.1e-28
Identity = 61/158 (38.61%), Postives = 96/158 (60.76%), Query Frame = 0


Query: 3   SFQHRLQTFLQNCRSGKITL--NEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQV 62
           +F  R  ++ +  RSG + +  ++A+D F+ M+ S P P +  F+ L + + K K Y  V
Sbjct: 48  AFSDRNLSYRERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLV 107

Query: 63  FSLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKG 122
            +L   M L G+  + YT +I+INC C   ++    +AM  I++ GY PN +T+STLI G
Sbjct: 108 LALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLING 167

Query: 123 LCMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGLLL 159
           LC+E R+SEA  L  RM ++G +P++IT  TL+ GL L
Sbjct: 168 LCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205

[Close]

BLAST of PI0013730 vs. TAIR 10
Match: AT1G12620.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-25
Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 0


Query: 10  TFLQNCRSGKITLNE--ALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQVFSLYNLM 69
           ++ +  RSG + + E  A+D FQ+M  S P P +  F+ L + + + K Y  V  L   M
Sbjct: 39  SYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQM 98

Query: 70  RLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKGLCMEHRI 129
            L G+  + YT +I+INC C   +++   +AM  I++ GY P+ VT+STLI GLC+E R+
Sbjct: 99  ELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRV 158

Query: 130 SEASLLFRRMQKLGCRPNVITYGTLMKGLLL 159
           SEA  L  RM ++G +P +IT   L+ GL L
Sbjct: 159 SEALELVDRMVEMGHKPTLITLNALVNGLCL 189

[Close]

BLAST of PI0013730 vs. TAIR 10
Match: AT1G12775.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 112.1 bits (279), Expect = 4.9e-25
Identity = 57/158 (36.08%), Postives = 90/158 (56.96%), Query Frame = 0


Query: 3   SFQHRLQTFLQNCRSGKITL--NEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQV 62
           +F  R  ++     SG + +  ++A+D F+ M+ S P P +  FN L + + K K Y  V
Sbjct: 48  TFSDRNLSYRDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELV 107

Query: 63  FSLYNLMRLAGLFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKG 122
            +L   M   G+    YT +I+INC C   +++   + M  IM+ GY P+ V ++TL+ G
Sbjct: 108 LALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNG 167

Query: 123 LCMEHRISEASLLFRRMQKLGCRPNVITYGTLMKGLLL 159
           LC+E R+SEA  L  RM ++G +P +IT  TL+ GL L
Sbjct: 168 LCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205

[Close]

BLAST of PI0013730 vs. TAIR 10
Match: AT1G63150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 6.4e-25
Identity = 58/147 (39.46%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 12  LQNCRSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQVFSLYNLMRLAG 71
           L+N  S  I +++A+D F  M+ S P P I  FN LL+ + K+  +  V SL   M+  G
Sbjct: 54  LRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLG 113

Query: 72  LFPDCYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKGLCMEHRISEAS 131
           +  D YT++I INC C  ++++  LA +A +M+ GY P+IVT S+L+ G C   RIS+A 
Sbjct: 114 ISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAV 173

Query: 132 LLFRRMQKLGCRPNVITYGTLMKGLLL 159
            L  +M ++G +P+  T+ TL+ GL L
Sbjct: 174 ALVDQMVEMGYKPDTFTFTTLIHGLFL 200

[Close]

BLAST of PI0013730 vs. TAIR 10
Match: AT1G62720.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 6.4e-25
Identity = 52/140 (37.14%), Postives = 88/140 (62.86%), Query Frame = 0


Query: 16  RSGKITLNEALDFFQQMMCSNPTPPISSFNHLLAGLTKIKHYSQVFSLYNLMRLAGLFPD 75
           +   + L E +D F +M+ S P P I  F+ +L+ + K K+Y  V SL++ M + G+  D
Sbjct: 44  KRSSMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHD 103

Query: 76  CYTFNILINCLCNVNRINEGLAAMAGIMRRGYFPNIVTYSTLIKGLCMEHRISEASLLFR 135
            Y++NI+INCLC  +R    L+ +  +M+ GY P++VT S+LI G C  +R+ +A  L  
Sbjct: 104 LYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVS 163

Query: 136 RMQKLGCRPNVITYGTLMKG 156
           +M+++G RP+V+ Y T++ G
Sbjct: 164 KMEEMGFRPDVVIYNTIIDG 183

The following BLAST results are available for this feature:

BLAST of PI0013730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WKV3	1.1e-26	38.61	Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidop...	[more]
Q9ASZ8	1.8e-24	39.07	Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX...	[more]
Q9LPX2	7.0e-24	36.08	Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidop...	[more]
Q9CAM8	9.1e-24	39.46	Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX...	[more]
Q9SI78	9.1e-24	37.14	Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana OX...	[more]

BLAST of PI0013730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DYM0	5.1e-70	81.60	pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isofor...	[more]
A0A5A7UYB2	5.1e-70	81.60	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4DYL3	1.9e-61	67.61	pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis...	[more]
A0A5D3CCW0	4.3e-61	70.24	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1JSG4	4.5e-58	69.64	pentatricopeptide repeat-containing protein At1g63330-like OS=Cucurbita maxima O...	[more]

BLAST of PI0013730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646288.1	4.7e-70	72.68	hypothetical protein Csa_016114 [Cucumis sativus]	[more]
KAA0059627.1	1.1e-69	81.60	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08160...	[more]
XP_016901059.1	1.1e-69	81.60	PREDICTED: pentatricopeptide repeat-containing protein At1g63080, mitochondrial-...	[more]
XP_016901072.1	4.0e-61	67.61	PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X3...	[more]
KAA0059626.1	8.9e-61	70.24	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08159...	[more]

BLAST of PI0013730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12300.1	8.1e-28	38.61	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G12620.1	1.3e-25	39.07	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G12775.1	4.9e-25	36.08	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G63150.1	6.4e-25	39.46	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G62720.1	6.4e-25	37.14	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 43..76 e-value: 8.9E-5 score: 20.4 coord: 77..110 e-value: 2.0E-6 score: 25.6 coord: 112..146 e-value: 4.5E-10 score: 37.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 109..156 e-value: 1.9E-15 score: 56.8 coord: 41..88 e-value: 1.7E-12 score: 47.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 110..144 score: 12.737088
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 75..109 score: 9.766576
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 7..175 e-value: 9.5E-34 score: 119.2
None	No IPR available	PANTHER	PTHR47938	RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED	coord: 5..177
None	No IPR available	PANTHER	PTHR47938:SF12	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5, MITOCHONDRIAL	coord: 5..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013730.1	PI0013730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding