PI0013721 (gene) Melon (PI 482460) v1

Overview


Name	PI0013721
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Transposase
Location	chr08: 11113060 .. 11113554 (+)
RNA-Seq Expression	PI0013721
Synteny	PI0013721

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTGGGAAGCGTTAGAAGTCATCGCCTGGCCTGGGGCCGCATGGAAGATCATGCCGACGGGAAAATATCAGGTTTATCCACACCAACTAACCACAGAAGCAAGTGTGTGGCTGTTTTTCATCAAGAAGAAGATATTCCCCACGCGCCATAACAACACCATCAATTTAGAGTCAGTGATGCTACTCTATTGCATACTGACAAAGAAGCGTGTAAACCTCAGCGATTTGATAGCCACATCCATCCTGGCTTGGATGCGAGCTCCCAAGGGTGCCATGCCTTTCCCATCTACAATTGAAGCCCTCTGCGTGAAGGTTGTACTCTTCCTAGGCGCCATGAACACTGTCCCAATTCCAGGCGGCCTGTGCAATCAAATGTCTTTAAATCGCATGATCACACTCCATGCCACAAGGAAATGGAAAGGCGGTCTAAGACATTGGGTGACACGACCAATGAAGGCACGACCCAAGCAGAGCGCAAAAGAAAGGCCCTAG

mRNA sequence

ATGGCCTGGGAAGCGTTAGAAGTCATCGCCTGGCCTGGGGCCGCATGGAAGATCATGCCGACGGGAAAATATCAGGTTTATCCACACCAACTAACCACAGAAGCAAGTGTGTGGCTGTTTTTCATCAAGAAGAAGATATTCCCCACGCGCCATAACAACACCATCAATTTAGAGTCAGTGATGCTACTCTATTGCATACTGACAAAGAAGCGTGTAAACCTCAGCGATTTGATAGCCACATCCATCCTGGCTTGGATGCGAGCTCCCAAGGGTGCCATGCCTTTCCCATCTACAATTGAAGCCCTCTGCGTGAAGGTTGTACTCTTCCTAGGCGCCATGAACACTGTCCCAATTCCAGGCGGCCTGTGCAATCAAATGTCTTTAAATCGCATGATCACACTCCATGCCACAAGGAAATGGAAAGGCGGTCTAAGACATTGGGTGACACGACCAATGAAGGCACGACCCAAGCAGAGCGCAAAAGAAAGGCCCTAG

Coding sequence (CDS)

ATGGCCTGGGAAGCGTTAGAAGTCATCGCCTGGCCTGGGGCCGCATGGAAGATCATGCCGACGGGAAAATATCAGGTTTATCCACACCAACTAACCACAGAAGCAAGTGTGTGGCTGTTTTTCATCAAGAAGAAGATATTCCCCACGCGCCATAACAACACCATCAATTTAGAGTCAGTGATGCTACTCTATTGCATACTGACAAAGAAGCGTGTAAACCTCAGCGATTTGATAGCCACATCCATCCTGGCTTGGATGCGAGCTCCCAAGGGTGCCATGCCTTTCCCATCTACAATTGAAGCCCTCTGCGTGAAGGTTGTACTCTTCCTAGGCGCCATGAACACTGTCCCAATTCCAGGCGGCCTGTGCAATCAAATGTCTTTAAATCGCATGATCACACTCCATGCCACAAGGAAATGGAAAGGCGGTCTAAGACATTGGGTGACACGACCAATGAAGGCACGACCCAAGCAGAGCGCAAAAGAAAGGCCCTAG

Protein sequence

MAWEALEVIAWPGAAWKIMPTGKYQVYPHQLTTEASVWLFFIKKKIFPTRHNNTINLESVMLLYCILTKKRVNLSDLIATSILAWMRAPKGAMPFPSTIEALCVKVVLFLGAMNTVPIPGGLCNQMSLNRMITLHATRKWKGGLRHWVTRPMKARPKQSAKERP

Homology

[Close]

BLAST of PI0013721 vs. ExPASy TrEMBL
Match: A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-24
Identity = 56/106 (52.83%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 1   MAWEALEVIAWPGAAWKIMPTG-KYQVYPHQLTTEASVWLFFIKKKIFPTRHNNTINLES 60
           +A EAL+V+AWPG   ++ P   +YQ+YPH LTT+A+VW+FF K KIFPT +++TI+++ 
Sbjct: 62  LAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDY 121

Query: 61  VMLLYCILTKKRVNLSDLIATSILAWMRAPKGAMPFPSTIEALCVK 106
            ++LYCI+ KK +NL ++I  +IL WM  PK AMPFPS +E LC+K
Sbjct: 122 TVILYCIMIKKAINLDEIIKAAILTWMEIPKEAMPFPSLMEKLCLK 166

[Close]

BLAST of PI0013721 vs. ExPASy TrEMBL
Match: A0A5D3DVQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G00370 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.8e-24
Identity = 58/125 (46.40%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 4   EALEVIAWPGAAWKIMPTGKYQVYPHQLTTEASVWLFFIKKKIFPTRHNNTINLESVMLL 63
           EALE +AW    W +    KY+++ H LTTEASVWL FIKKK+ PTRH+NTI+ E +MLL
Sbjct: 168 EALERVAWARKKWDVTSIKKYRLFLHNLTTEASVWLVFIKKKLMPTRHDNTISFERIMLL 227

Query: 64  YCILTKKRVNLSDLIATSILAWMRAPKGAMPFPSTIEALCVKVVLFLGAMNTVP-IPGGL 123
           YCI+ +  V++ ++I   I AW++ P+GA PFP  IE LC++    L     +  +  G+
Sbjct: 228 YCIMEEIPVDVDEIICDHIKAWVQHPRGAKPFPHLIERLCLRSCSELEQSPQIACVQDGM 287

Query: 124 CNQMS 128
           CN  S
Sbjct: 288 CNTKS 292

[Close]

BLAST of PI0013721 vs. ExPASy TrEMBL
Match: A0A5A7U806 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 7.0e-23
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 2    AWEALEVIAWPGAAWKIMPTGKYQVYPHQLTTEASVWLFFIKKKIFPTRHNNTINLESVM 61
            A + +++I WP A     PT + Q++PHQLT EA+VWLFFIKKKIFPT H++TI  E  +
Sbjct: 1266 AKKIIKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYAL 1325

Query: 62   LLYCILTKKRVNLSDLIATSILAWMRAPKGAMPFPSTIEALCVK 106
            +LYCI  KK  NL  ++  + L+WMR PK A PFP+T++ LC+K
Sbjct: 1326 VLYCINAKKPFNLGYVMNEAFLSWMRNPKNAKPFPTTVKKLCLK 1369

[Close]

BLAST of PI0013721 vs. ExPASy TrEMBL
Match: A0A5D3CVL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00870 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 7.0e-23
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 2   AWEALEVIAWPGAAWKIMPTGKYQVYPHQLTTEASVWLFFIKKKIFPTRHNNTINLESVM 61
           A + +++I WP A     PT + Q++PHQLT EA+VWLFFIKKKIFPT H++TI  E  +
Sbjct: 105 AKKIIKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYAL 164

Query: 62  LLYCILTKKRVNLSDLIATSILAWMRAPKGAMPFPSTIEALCVK 106
           +LYCI  KK  NL  ++  + L+WMR PK A PFP+T++ LC+K
Sbjct: 165 VLYCINAKKPFNLGYVMNEAFLSWMRNPKNAKPFPTTVKKLCLK 208

[Close]

BLAST of PI0013721 vs. ExPASy TrEMBL
Match: A0A5D3CW17 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00800 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.7e-22
Identity = 62/143 (43.36%), Postives = 85/143 (59.44%), Query Frame = 0


Query: 4   EALEVIAWPGAAWKIMPTGKYQVYPHQLTTEASVWLFFIKKKIFPTRHNNTINLESVMLL 63
           +ALE I WPG  W  MPT KYQ++P+ L TE SVWL FIKK I PTRH++TI++E +MLL
Sbjct: 118 DALENIIWPGTKWDRMPTEKYQLFPNDLNTEVSVWLVFIKKNIMPTRHDSTISMEIIMLL 177

Query: 64  YCILTKKRVNLSDLIATSILAWMRAPKGAMPFPSTIEALCVKVVLFLGAMNTVPIPGGLC 123
           Y      + N  ++    ++AW++ P GA PF    + L +K    L     V +  G+C
Sbjct: 178 YYNGDSNQFN--EISCEHLIAWVKHPCGAKPFLCLTKQLYIKAYPELEKSQQVQVSNGVC 237

Query: 124 NQMSLNRMITLHATRKWKGGLRH 147
              +L+R IT+H   K K  LRH
Sbjct: 238 IGPTLHRFITIH---KNKTKLRH 255

[Close]

BLAST of PI0013721 vs. NCBI nr
Match: KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 5.9e-24
Identity = 56/106 (52.83%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 1   MAWEALEVIAWPGAAWKIMPTG-KYQVYPHQLTTEASVWLFFIKKKIFPTRHNNTINLES 60
           +A EAL+V+AWPG   ++ P   +YQ+YPH LTT+A+VW+FF K KIFPT +++TI+++ 
Sbjct: 62  LAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDY 121

Query: 61  VMLLYCILTKKRVNLSDLIATSILAWMRAPKGAMPFPSTIEALCVK 106
            ++LYCI+ KK +NL ++I  +IL WM  PK AMPFPS +E LC+K
Sbjct: 122 TVILYCIMIKKAINLDEIIKAAILTWMEIPKEAMPFPSLMEKLCLK 166

[Close]

BLAST of PI0013721 vs. NCBI nr
Match: KAA0054837.1 (hypothetical protein E6C27_scaffold406G00150 [Cucumis melo var. makuwa] >TYK27771.1 hypothetical protein E5676_scaffold1142G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-23
Identity = 58/125 (46.40%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 4   EALEVIAWPGAAWKIMPTGKYQVYPHQLTTEASVWLFFIKKKIFPTRHNNTINLESVMLL 63
           EALE +AW    W +    KY+++ H LTTEASVWL FIKKK+ PTRH+NTI+ E +MLL
Sbjct: 168 EALERVAWARKKWDVTSIKKYRLFLHNLTTEASVWLVFIKKKLMPTRHDNTISFERIMLL 227

Query: 64  YCILTKKRVNLSDLIATSILAWMRAPKGAMPFPSTIEALCVKVVLFLGAMNTVP-IPGGL 123
           YCI+ +  V++ ++I   I AW++ P+GA PFP  IE LC++    L     +  +  G+
Sbjct: 228 YCIMEEIPVDVDEIICDHIKAWVQHPRGAKPFPHLIERLCLRSCSELEQSPQIACVQDGM 287

Query: 124 CNQMS 128
           CN  S
Sbjct: 288 CNTKS 292

[Close]

BLAST of PI0013721 vs. NCBI nr
Match: KAA0049609.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-22
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 2    AWEALEVIAWPGAAWKIMPTGKYQVYPHQLTTEASVWLFFIKKKIFPTRHNNTINLESVM 61
            A + +++I WP A     PT + Q++PHQLT EA+VWLFFIKKKIFPT H++TI  E  +
Sbjct: 1266 AKKIIKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYAL 1325

Query: 62   LLYCILTKKRVNLSDLIATSILAWMRAPKGAMPFPSTIEALCVK 106
            +LYCI  KK  NL  ++  + L+WMR PK A PFP+T++ LC+K
Sbjct: 1326 VLYCINAKKPFNLGYVMNEAFLSWMRNPKNAKPFPTTVKKLCLK 1369

[Close]

BLAST of PI0013721 vs. NCBI nr
Match: TYK15967.1 (hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-22
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 2   AWEALEVIAWPGAAWKIMPTGKYQVYPHQLTTEASVWLFFIKKKIFPTRHNNTINLESVM 61
           A + +++I WP A     PT + Q++PHQLT EA+VWLFFIKKKIFPT H++TI  E  +
Sbjct: 105 AKKIIKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYAL 164

Query: 62  LLYCILTKKRVNLSDLIATSILAWMRAPKGAMPFPSTIEALCVK 106
           +LYCI  KK  NL  ++  + L+WMR PK A PFP+T++ LC+K
Sbjct: 165 VLYCINAKKPFNLGYVMNEAFLSWMRNPKNAKPFPTTVKKLCLK 208

[Close]

BLAST of PI0013721 vs. NCBI nr
Match: KAA0041264.1 (hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa] >TYK16063.1 hypothetical protein E5676_scaffold32G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 5.5e-22
Identity = 62/143 (43.36%), Postives = 85/143 (59.44%), Query Frame = 0


Query: 4   EALEVIAWPGAAWKIMPTGKYQVYPHQLTTEASVWLFFIKKKIFPTRHNNTINLESVMLL 63
           +ALE I WPG  W  MPT KYQ++P+ L TE SVWL FIKK I PTRH++TI++E +MLL
Sbjct: 118 DALENIIWPGTKWDRMPTEKYQLFPNDLNTEVSVWLVFIKKNIMPTRHDSTISMEIIMLL 177

Query: 64  YCILTKKRVNLSDLIATSILAWMRAPKGAMPFPSTIEALCVKVVLFLGAMNTVPIPGGLC 123
           Y      + N  ++    ++AW++ P GA PF    + L +K    L     V +  G+C
Sbjct: 178 YYNGDSNQFN--EISCEHLIAWVKHPCGAKPFLCLTKQLYIKAYPELEKSQQVQVSNGVC 237

Query: 124 NQMSLNRMITLHATRKWKGGLRH 147
              +L+R IT+H   K K  LRH
Sbjct: 238 IGPTLHRFITIH---KNKTKLRH 255

The following BLAST results are available for this feature:

BLAST of PI0013721 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013721 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6M5	2.8e-24	52.83	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002...	[more]
A0A5D3DVQ6	4.8e-24	46.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U806	7.0e-23	51.92	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE...	[more]
A0A5D3CVL7	7.0e-23	51.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CW17	2.7e-22	43.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0013721 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062900.1	5.9e-24	52.83	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054837.1	1.0e-23	46.40	hypothetical protein E6C27_scaffold406G00150 [Cucumis melo var. makuwa] >TYK2777...	[more]
KAA0049609.1	1.4e-22	51.92	transposase [Cucumis melo var. makuwa]	[more]
TYK15967.1	1.4e-22	51.92	hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]	[more]
KAA0041264.1	5.5e-22	43.36	hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa] >TYK160...	[more]

BLAST of PI0013721 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013721.1	PI0013721.1	mRNA