PI0013699 (gene) Melon (PI 482460) v1

Overview


Name	PI0013699
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerases II and IV subunit 5A-like
Location	chr11: 9598025 .. 9600012 (-)
RNA-Seq Expression	PI0013699
Synteny	PI0013699

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTCTCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGGAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGAGATTTTGAGCTTGATATGTCTAAAGCACAATTTAAGAATAAGTTTGGTGAGAGCATGAAAAGAGAAGATCTTGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGGTATAGTCTCATACTATACAACGATAATATCATTTGTTTATGACTCTTTTTTGATTACTATTTAGTTTTCGATTTTTAGTTTCCGAGTCTCCCAACTCCTTTACTATGATTTTCATTGTCTAATGTAAACATTAAATTAACCAAAAACTTAGGGTGTGTTTGGCCCAAGGAGTTGTGAAATGTAAAGTAAGAGTTGAGAAGTAGTAGTTGTGAATTTCACTCCTTGTTTGGCTTGAGAAGTTGGTGGGTCCTACTACTAAAAAATTTTAATTTTATATTTTATATTTTATCAACTTCTTACACCGTGGGTCTCACAGTTCACAAAAGTGGCACCTTTATTAAGAAACTCTGTCTCACAATTCTGCAACTCCAAACACATGCCTCTTAACTATAACATGTTAACTCCACACTTCCTAACTCAACTTAGCCCCCAACTCCCCTCAATTGTTATAAAACAGGATCTCAGTGACTCATGGAATTTATTGTGTATTTGAACACAGTGACTCATGGAATTTATTGTGTATTTGAACATGTTTAAACTTTACCTTGATAAAGGGATGCAATAAATTTCCTCGGAAGAAGTTTCTATTTGAGTCATTCTCAAGTGCTTTGACTGTTTGACATGGAAAACAGTTAACTATCGATAAATATTTACCACACTTATATAAAGTTTGGTTATAGGGATGCATAGGTTATTGGTTAACCCTTTTATTTGTTTCCCTCCTTTTATTTATGACTCTTTTACACAGATATATGTTTTCTTTCCTGAAGAGCCGAAGGTTGGTATCAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTGCCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGTAATAAAATCGCCGAATTATCGTCTACTAAAGTCCATTTGGAGGTTTTCCAGGTAAAAGTTAAATCTCTAATAGTTTTTGGAGCCTTTTAATGTTGGATAGATTATTTTAATATTATCACAAGCTACAAATTTGACGAGAACTAGAGAGGATTTTCTATTCTCCTAACCTAAAACCAGTTCTCTCGTACTTTTGTTGTCTCTTACATCAACAGTGATGGGGGGTGGGGGGATAAGAATGGTGATGTTAGATTGTAATTACTTATGTGATTTTCATTTTCCATATAATAATGTCTTGCTTACATTCTTATTTTACTGACGTTAACGTTTACCTCTTTGTCACTTTTTGATGCAGGAAACAGAATTGATGGTTAACATTAAAGAGCACGTTCTCATTCCCGAGCACCAGACGCTGACAGATGAAGAGAAGAAAACGTTGTTGGAGAGGTATACGGTGAAAGAAACACAAGTGAGTTTCATTTTATTTGATCTTATTTTCTTGAAATACAAGAATATTGTGAGAATTATGTTCCATAAAATACGTTGAAATAACTTCGGTAGATTGGCCCGTGGTGAATAAGATTTTGGTAAATGATAAAGATTTTAGGAAATGAGTTCAAGCCATGATGATTACCTACCTAAAACATACATTGATAATCAAATATAGTAAGGTTGGGCAGTTGTGTTTGTTAGAAATGTGCTTAAGTTGGTTCGGACACTTTGGATACATATTGAAAATGGGTATGTGTTAGTTTCTAACAAACATTTCGTATTTTATCTTAGCTACCTCGCATGCAAGTTACTGATCCAATTGCTAGATACTATGGGCTGAAGCGTGGACACGTAGTGAAGATCATCCGACCAAGTGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA

mRNA sequence

ATGGTGTTCTCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGGAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGAGATTTTGAGCTTGATATGTCTAAAGCACAATTTAAGAATAAGTTTGGTGAGAGCATGAAAAGAGAAGATCTTGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGATATATGTTTTCTTTCCTGAAGAGCCGAAGGTTGGTATCAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTGCCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGTAATAAAATCGCCGAATTATCGTCTACTAAAGTCCATTTGGAGGTTTTCCAGGAAACAGAATTGATGGTTAACATTAAAGAGCACGTTCTCATTCCCGAGCACCAGACGCTGACAGATGAAGAGAAGAAAACGTTGTTGGAGAGGTATACGGTGAAAGAAACACAACTACCTCGCATGCAAGTTACTGATCCAATTGCTAGATACTATGGGCTGAAGCGTGGACACGTAGTGAAGATCATCCGACCAAGTGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA

Coding sequence (CDS)

ATGGTGTTCTCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGGAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGAGATTTTGAGCTTGATATGTCTAAAGCACAATTTAAGAATAAGTTTGGTGAGAGCATGAAAAGAGAAGATCTTGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGATATATGTTTTCTTTCCTGAAGAGCCGAAGGTTGGTATCAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTGCCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGTAATAAAATCGCCGAATTATCGTCTACTAAAGTCCATTTGGAGGTTTTCCAGGAAACAGAATTGATGGTTAACATTAAAGAGCACGTTCTCATTCCCGAGCACCAGACGCTGACAGATGAAGAGAAGAAAACGTTGTTGGAGAGGTATACGGTGAAAGAAACACAACTACCTCGCATGCAAGTTACTGATCCAATTGCTAGATACTATGGGCTGAAGCGTGGACACGTAGTGAAGATCATCCGACCAAGTGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA

Protein sequence

MVFSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSKRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSSTKVHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYYGLKRGHVVKIIRPSETAGRYVTYRYVV

Homology

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BLAST of PI0013699 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.9e-79
Identity = 149/206 (72.33%), Postives = 179/206 (86.89%), Query Frame = 0


Query: 2   VFSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSKR 61
           + +EEE+ +L+R++KT++QML+DRGYF+ D EL M+K QF  K G++MKREDLV  K+KR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSSTK 121
           N++SDQ+Y+FFP+E KVG+K ++ Y  RMKSENV RAI VVQ NLTPFAR  I+E+SS K
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISS-K 120

Query: 122 VHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYYG 181
            HLEVFQE E++VNIKEHVL+PEHQ LT EEKKTLLERYTVKETQLPR+QVTDPIARY+G
Sbjct: 121 FHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFG 180

Query: 182 LKRGHVVKIIRPSETAGRYVTYRYVV 208
           LKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 205

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BLAST of PI0013699 vs. ExPASy Swiss-Prot
Match: Q80UW8 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 8.7e-52
Identity = 104/207 (50.24%), Postives = 147/207 (71.01%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGES-----MKREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD +  +FK +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSS 124
             ++ +DQ++VFFPEEPKVGIK ++ Y  RM+ EN+ RA+ VVQ  +TP A+  + ++ +
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDM-A 123

Query: 125 TKVHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARY 184
            K  LE F + EL++NI EH L+PEH  +T EE   LL RY ++E+QLPR+Q  DP+ARY
Sbjct: 124 PKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARY 183

Query: 185 YGLKRGHVVKIIRPSETAGRYVTYRYV 207
           +G+KRG VVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

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BLAST of PI0013699 vs. ExPASy Swiss-Prot
Match: B0BNE2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 8.7e-52
Identity = 104/207 (50.24%), Postives = 147/207 (71.01%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGES-----MKREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD +  +FK +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSS 124
             ++ +DQ++VFFPEEPKVGIK ++ Y  RM+ EN+ RA+ VVQ  +TP A+  + ++ +
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDM-A 123

Query: 125 TKVHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARY 184
            K  LE F + EL++NI EH L+PEH  +T EE   LL RY ++E+QLPR+Q  DP+ARY
Sbjct: 124 PKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARY 183

Query: 185 YGLKRGHVVKIIRPSETAGRYVTYRYV 207
           +G+KRG VVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

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BLAST of PI0013699 vs. ExPASy Swiss-Prot
Match: Q5R587 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.5e-51
Identity = 103/207 (49.76%), Postives = 146/207 (70.53%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGES-----MKREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD +  +F+ +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSS 124
             ++ +DQ++VFFPEEPKVGIK ++ Y  RM+ EN+ RA+ VVQ  +TP A+  + ++ +
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDM-A 123

Query: 125 TKVHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARY 184
            K  LE F + EL++NI EH L+PEH  +T EE   LL RY ++E QLPR+Q  DP+ARY
Sbjct: 124 PKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARY 183

Query: 185 YGLKRGHVVKIIRPSETAGRYVTYRYV 207
           +G+KRG VVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

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BLAST of PI0013699 vs. ExPASy Swiss-Prot
Match: A8XGH1 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.3e-51
Identity = 110/212 (51.89%), Postives = 145/212 (68.40%), Query Frame = 0


Query: 1   MVFSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGE-----SMKREDLV 60
           M   E E  +L+R+RKTVLQM+ DRGY V   ELD     FK  FG+        R DL 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLT 60

Query: 61  INKSKRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIA 120
           I  +  ++ +DQ++VFFPE+ K+GIK ++    +M+ +N++RAI VVQ  +TP A+  I 
Sbjct: 61  ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 121 ELSSTKVHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDP 180
           ++ + K  LE F E ELMVNI EH L+PEH  +T EEK  LL RY +K++QLPR+Q  DP
Sbjct: 121 DM-APKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDP 180

Query: 181 IARYYGLKRGHVVKIIRPSETAGRYVTYRYVV 208
           +ARY+GL+RG VVKIIRPSETAGRY+TYR VV
Sbjct: 181 VARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211

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BLAST of PI0013699 vs. ExPASy TrEMBL
Match: A0A5A7UJ12 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003460 PE=3 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.9e-103
Identity = 200/207 (96.62%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 1   MVFSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSK 60
           MVF EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGE+MKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENV RAIFVVQLNLTPFARNKIAELSST
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KVHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYY 180
           KVHLEVFQE ELMVNIKEHVLIPEHQ+LTDEEKKTLL RYTVKETQLPRMQVTDPIARYY
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of PI0013699 vs. ExPASy TrEMBL
Match: A0A0A0KF69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G170410 PE=3 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.9e-103
Identity = 198/207 (95.65%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 1   MVFSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSK 60
           MVF EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSK QFKNKFGE+MKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENV RAIFVVQLNLTPFARNKIAELSS+
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120

Query: 121 KVHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYY 180
           K+HLEVFQETEL+VNIKEHVLIPEHQTLTDEEKKTLL RYTVKETQLPRMQVTDPI+RYY
Sbjct: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRGHVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of PI0013699 vs. ExPASy TrEMBL
Match: A0A1S3C2N2 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496327 PE=3 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.9e-103
Identity = 200/207 (96.62%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 1   MVFSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSK 60
           MVF EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGE+MKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENV RAIFVVQLNLTPFARNKIAELSST
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KVHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYY 180
           KVHLEVFQE ELMVNIKEHVLIPEHQ+LTDEEKKTLL RYTVKETQLPRMQVTDPIARYY
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of PI0013699 vs. ExPASy TrEMBL
Match: A0A5D3DA58 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00160 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.2e-100
Identity = 200/223 (89.69%), Postives = 202/223 (90.58%), Query Frame = 0


Query: 1   MVFSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSK 60
           MVF EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGE+MKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENV RAIFVVQLNLTPFARNKIAELSST
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KVHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQ-------------- 180
           KVHLEVFQE ELMVNIKEHVLIPEHQ+LTDEEKKTLL RYTVKETQ              
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQVSFILFDLIFLKYK 180

Query: 181 --LPRMQVTDPIARYYGLKRGHVVKIIRPSETAGRYVTYRYVV 208
             LPRMQVTDPIARYYGLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 NILPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 223

[Close]

BLAST of PI0013699 vs. ExPASy TrEMBL
Match: A0A1S3C358 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496327 PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.2e-93
Identity = 181/187 (96.79%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 21  MLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI 80
           MLKDRGYFVGDFELDMSKAQFKNKFGE+MKREDLVINKSKRNNSSDQIYVFFPEEPKVGI
Sbjct: 1   MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI 60

Query: 81  KIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSSTKVHLEVFQETELMVNIKEHV 140
           KIVETYVGRMKSENV RAIFVVQLNLTPFARNKIAELSSTKVHLEVFQE ELMVNIKEHV
Sbjct: 61  KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHLEVFQEAELMVNIKEHV 120

Query: 141 LIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYYGLKRGHVVKIIRPSETAGRY 200
           LIPEHQ+LTDEEKKTLL RYTVKETQLPRMQVTDPIARYYGLKRG VVKIIRPSETAGRY
Sbjct: 121 LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRY 180

Query: 201 VTYRYVV 208
           VTYRYVV
Sbjct: 181 VTYRYVV 187

[Close]

BLAST of PI0013699 vs. NCBI nr
Match: XP_004143184.1 (DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >KGN47027.1 hypothetical protein Csa_020872 [Cucumis sativus])

HSP 1 Score: 384.0 bits (985), Expect = 8.0e-103
Identity = 198/207 (95.65%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 1   MVFSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSK 60
           MVF EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSK QFKNKFGE+MKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENV RAIFVVQLNLTPFARNKIAELSS+
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120

Query: 121 KVHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYY 180
           K+HLEVFQETEL+VNIKEHVLIPEHQTLTDEEKKTLL RYTVKETQLPRMQVTDPI+RYY
Sbjct: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRGHVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of PI0013699 vs. NCBI nr
Match: XP_008456369.1 (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo] >KAA0054557.1 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 384.0 bits (985), Expect = 8.0e-103
Identity = 200/207 (96.62%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 1   MVFSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSK 60
           MVF EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGE+MKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENV RAIFVVQLNLTPFARNKIAELSST
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KVHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYY 180
           KVHLEVFQE ELMVNIKEHVLIPEHQ+LTDEEKKTLL RYTVKETQLPRMQVTDPIARYY
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of PI0013699 vs. NCBI nr
Match: TYK20394.1 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 373.6 bits (958), Expect = 1.1e-99
Identity = 200/223 (89.69%), Postives = 202/223 (90.58%), Query Frame = 0


Query: 1   MVFSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSK 60
           MVF EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGE+MKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSST 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENV RAIFVVQLNLTPFARNKIAELSST
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KVHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQ-------------- 180
           KVHLEVFQE ELMVNIKEHVLIPEHQ+LTDEEKKTLL RYTVKETQ              
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQVSFILFDLIFLKYK 180

Query: 181 --LPRMQVTDPIARYYGLKRGHVVKIIRPSETAGRYVTYRYVV 208
             LPRMQVTDPIARYYGLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 NILPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 223

[Close]

BLAST of PI0013699 vs. NCBI nr
Match: XP_008456371.1 (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cucumis melo])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 181/187 (96.79%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 21  MLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI 80
           MLKDRGYFVGDFELDMSKAQFKNKFGE+MKREDLVINKSKRNNSSDQIYVFFPEEPKVGI
Sbjct: 1   MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI 60

Query: 81  KIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSSTKVHLEVFQETELMVNIKEHV 140
           KIVETYVGRMKSENV RAIFVVQLNLTPFARNKIAELSSTKVHLEVFQE ELMVNIKEHV
Sbjct: 61  KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHLEVFQEAELMVNIKEHV 120

Query: 141 LIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYYGLKRGHVVKIIRPSETAGRY 200
           LIPEHQ+LTDEEKKTLL RYTVKETQLPRMQVTDPIARYYGLKRG VVKIIRPSETAGRY
Sbjct: 121 LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRY 180

Query: 201 VTYRYVV 208
           VTYRYVV
Sbjct: 181 VTYRYVV 187

[Close]

BLAST of PI0013699 vs. NCBI nr
Match: XP_038895255.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_038895256.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_038895258.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_038895259.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida])

HSP 1 Score: 342.4 bits (877), Expect = 2.7e-90
Identity = 178/207 (85.99%), Postives = 191/207 (92.27%), Query Frame = 0


Query: 1   MVFSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSK 60
           MV SEEEITKLFRVRKTVLQMLKDRGYFVGD EL MS+ QFK KFGESMKREDLVINKSK
Sbjct: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDSELAMSREQFKYKFGESMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSST 120
           RNNSS+QIY+FFPEEPKVGIK V+TYV RMKSENV+RA+ VVQ NLTPFAR K+ E+SS 
Sbjct: 61  RNNSSEQIYIFFPEEPKVGIKTVQTYVNRMKSENVSRALLVVQQNLTPFARTKVGEISS- 120

Query: 121 KVHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYY 180
           + HLEVFQE ELMVNIK+HVLIPEHQ LT+EEKKTLLERYTVKETQLPR+QVTDPIARYY
Sbjct: 121 QFHLEVFQEAELMVNIKDHVLIPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPIARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           G+KRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GMKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of PI0013699 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 296.2 bits (757), Expect = 2.0e-80
Identity = 149/206 (72.33%), Postives = 179/206 (86.89%), Query Frame = 0


Query: 2   VFSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSKR 61
           + +EEE+ +L+R++KT++QML+DRGYF+ D EL M+K QF  K G++MKREDLV  K+KR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSSTK 121
           N++SDQ+Y+FFP+E KVG+K ++ Y  RMKSENV RAI VVQ NLTPFAR  I+E+SS K
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISS-K 120

Query: 122 VHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYYG 181
            HLEVFQE E++VNIKEHVL+PEHQ LT EEKKTLLERYTVKETQLPR+QVTDPIARY+G
Sbjct: 121 FHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFG 180

Query: 182 LKRGHVVKIIRPSETAGRYVTYRYVV 208
           LKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of PI0013699 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 179.1 bits (453), Expect = 3.6e-45
Identity = 96/207 (46.38%), Postives = 146/207 (70.53%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESM---KREDLVINKSKR 64
           ++EIT++F+VR+TVLQML+DRGY + + +L++ + +F  +F ++M    +E L ++ +K 
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 65  NNSSDQIYVFFPEEPKVGIKIVETYVG-RMKSENVARAIFVVQLNLTPFARNKIAELSST 124
            N +D+IYVF+PE PKVG+ +++  V  +M+ + V R I VV + +T  AR  ++EL+  
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNK- 124

Query: 125 KVHLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYY 184
            + +EVF+E EL+ NI EH L+ ++  L D+ KK LL  YTV++TQLPR+ VTDP+ARYY
Sbjct: 125 MLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYY 184

Query: 185 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKI R   T+  Y TYR+ V
Sbjct: 185 GLKRGQVVKIRRSDATSLDYYTYRFAV 210

[Close]

BLAST of PI0013699 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-30
Identity = 81/204 (39.71%), Postives = 125/204 (61.27%), Query Frame = 0


Query: 4   SEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSKRNN 63
           S  E  K +  R+T ++ML+DRGY V D ++++S  QF+  +GE    + L I+   R +
Sbjct: 17  SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76

Query: 64  SSDQIYVFFPEEPKVGIKIVETYVGRMKS-ENVARAIFVVQLNLTPFARNKIAELSSTKV 123
           SS +I V F     V +  +      + S EN+   I V+Q ++T  A  K  EL S KV
Sbjct: 77  SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQAL-KAVELFSFKV 136

Query: 124 HLEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYYGL 183
             E+F+ T+L+VN+ +HVL P+HQ L D+EK++LL++++++E QLPR+   DPI RYYGL
Sbjct: 137 --ELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 196

Query: 184 KRGHVVKIIRPSETAGRYVTYRYV 207
           + G V+K+    E +  +VTYR V
Sbjct: 197 ETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of PI0013699 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-28
Identity = 75/203 (36.95%), Postives = 117/203 (57.64%), Query Frame = 0


Query: 4   SEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSKRNN 63
           S EE  + +  R+  LQML+DRGY V D ++++S   F+  +GE    + L I+   R++
Sbjct: 21  SSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSD 80

Query: 64  SSDQIYVFFPEEPKVGIKIVETYVGRMKSENVARAIFVVQLNLTPFARNKIAELSSTKVH 123
           S+ ++ + F     V +  + + V  + S+     + +V  N       K  EL S KV 
Sbjct: 81  STKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKV- 140

Query: 124 LEVFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYYGLK 183
            E+FQ T+L+VNI +H L P+HQ L DEEK TLL++++++E QLPR+   D I RYYGL+
Sbjct: 141 -EIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLE 200

Query: 184 RGHVVKIIRPSETAGRYVTYRYV 207
           +G VVK+    E    +V +R V
Sbjct: 201 KGQVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of PI0013699 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E )

HSP 1 Score: 105.1 bits (261), Expect = 6.7e-23
Identity = 66/202 (32.67%), Postives = 109/202 (53.96%), Query Frame = 0


Query: 7   EITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGESMKREDLVINKSKRNNSSD 66
           E  + +  R T  +ML+DRGY V + EL ++ ++F++ FGE  + E L I    R++   
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 67  QIYVFFPEEPKVGIKIVET-YVGRMKSENVARAIFVVQLNLTPFARNKIAELSSTKVHLE 126
           +I V F     + +K V   ++    +  +   I V+Q  +  FA+  +     T   +E
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFPFT---VE 154

Query: 127 VFQETELMVNIKEHVLIPEHQTLTDEEKKTLLERYTVKETQLPRMQVTDPIARYYGLKRG 186
            F   +L+VNI +H+  P+ + L  EEK+ LL ++ +++ QLP +Q  D   RYYGLK+ 
Sbjct: 155 TFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKK 214

Query: 187 HVVKIIRPSETAGRYVTYRYVV 208
            VVKI    E  G +VTYR ++
Sbjct: 215 QVVKITYSKEPVGDFVTYRCII 233

The following BLAST results are available for this feature:

BLAST of PI0013699 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81098	2.9e-79	72.33	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
Q80UW8	8.7e-52	50.24	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10...	[more]
B0BNE2	8.7e-52	50.24	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ...	[more]
Q5R587	2.5e-51	49.76	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=96...	[more]
A8XGH1	3.3e-51	51.89	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis bri...	[more]

BLAST of PI0013699 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJ12	3.9e-103	96.62	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis mel...	[more]
A0A0A0KF69	3.9e-103	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G170410 PE=3 SV=1	[more]
A0A1S3C2N2	3.9e-103	96.62	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis mel...	[more]
A0A5D3DA58	5.2e-100	89.69	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis mel...	[more]
A0A1S3C358	6.2e-93	96.79	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 OS=Cucumis mel...	[more]

BLAST of PI0013699 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143184.1	8.0e-103	95.65	DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >KGN47027.1 ...	[more]
XP_008456369.1	8.0e-103	96.62	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cu...	[more]
TYK20394.1	1.1e-99	89.69	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo ...	[more]
XP_008456371.1	1.3e-92	96.79	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cu...	[more]
XP_038895255.1	2.7e-90	85.99	DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_0...	[more]

BLAST of PI0013699 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22320.1	2.0e-80	72.33	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	3.6e-45	46.38	RNA polymerase II fifth largest subunit, C	[more]
AT2G41340.1	2.5e-30	39.71	RNA polymerase II fifth largest subunit, D	[more]
AT3G57080.1	1.1e-28	36.95	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT3G54490.1	6.7e-23	32.67	RNA polymerase II fifth largest subunit, E	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 134..206 e-value: 1.5E-33 score: 114.5
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 132..207 e-value: 3.4E-33 score: 115.1
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 132..207
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 5..90 e-value: 1.1E-29 score: 102.9
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 3..131 e-value: 7.0E-44 score: 151.2
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 5..135
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIRSF	PIRSF000747	RPB5	coord: 1..207 e-value: 3.4E-83 score: 276.1
None	No IPR available	PANTHER	PTHR10535:SF17	DNA-DIRECTED RNA POLYMERASES II AND IV SUBUNIT 5A-LIKE	coord: 1..207
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 1..207
IPR020609	Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 134..207 score: 22.287495

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013699.1	PI0013699.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity