PI0013693 (gene) Melon (PI 482460) v1

Overview


Name	PI0013693
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr06: 12199023 .. 12199247 (+)
RNA-Seq Expression	PI0013693
Synteny	PI0013693

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAACAACAACTTCAGGAAAGAATGGCATCCACAGAGAAAGAGATGGTGGACTTGAAAGAAATACTCCTTGGATTGAAAATGAGCATTGACCGTCTATCTGAAGACATAAAGGAGAACAGTTCTACGCGGAAAAAGGAAGAATCAGGGACATTTGATGCCTCTGTGCTGAAACTGAAAGGAAAGGCAAAGGAAGTGGAAACGACTGAAACTGGTGAATAA

mRNA sequence

ATGGCACAACAACAACTTCAGGAAAGAATGGCATCCACAGAGAAAGAGATGGTGGACTTGAAAGAAATACTCCTTGGATTGAAAATGAGCATTGACCGTCTATCTGAAGACATAAAGGAGAACAGTTCTACGCGGAAAAAGGAAGAATCAGGGACATTTGATGCCTCTGTGCTGAAACTGAAAGGAAAGGCAAAGGAAGTGGAAACGACTGAAACTGGTGAATAA

Coding sequence (CDS)

ATGGCACAACAACAACTTCAGGAAAGAATGGCATCCACAGAGAAAGAGATGGTGGACTTGAAAGAAATACTCCTTGGATTGAAAATGAGCATTGACCGTCTATCTGAAGACATAAAGGAGAACAGTTCTACGCGGAAAAAGGAAGAATCAGGGACATTTGATGCCTCTGTGCTGAAACTGAAAGGAAAGGCAAAGGAAGTGGAAACGACTGAAACTGGTGAATAA

Protein sequence

MAQQQLQERMASTEKEMVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKLKGKAKEVETTETGE

Homology

[Close]

BLAST of PI0013693 vs. ExPASy TrEMBL
Match: A0A5A7TII1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001860 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.1e-11
Identity = 37/70 (52.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MAQQQLQERMASTEKEMVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKL 60
          MAQ+Q++ER+  TEKE++ LKE++L +K S+DRL+++++EN S +KKEESGT D S++K+
Sbjct: 1  MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKM 60

Query: 61 KGKAKEVETT 71
          KGK +E + T
Sbjct: 61 KGKMEETDIT 70

[Close]

BLAST of PI0013693 vs. ExPASy TrEMBL
Match: A0A5D3CXP0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00230 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.1e-11
Identity = 37/70 (52.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MAQQQLQERMASTEKEMVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKL 60
          MAQ+Q++ER+  TEKE++ LKE++L +K S+DRL+++++EN S +KKEESGT D S++K+
Sbjct: 1  MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKM 60

Query: 61 KGKAKEVETT 71
          KGK +E + T
Sbjct: 61 KGKMEETDIT 70

[Close]

BLAST of PI0013693 vs. ExPASy TrEMBL
Match: A0A5A7SZF0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00100 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1   MAQQQLQERMASTEKEMVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKL 60
           MAQ+ L+ER   TEKE+V LKE++L +K S+DRL+E+++EN S +K+EESGT D SV+KL
Sbjct: 46  MAQRVLEERTEGTEKEVVGLKEMMLEMKKSMDRLTEEMRENHSYKKREESGTSDGSVMKL 105

Query: 61  KGKAKEVETTETG 74
           KGK +E + T+ G
Sbjct: 106 KGKMEEFDGTDEG 118

[Close]

BLAST of PI0013693 vs. ExPASy TrEMBL
Match: A0A5D3BGA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00080 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1   MAQQQLQERMASTEKEMVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKL 60
           MAQ+ L+ER   TEKE+V LKE++L +K S+DRL+E+++EN S +K+EESGT D SV+KL
Sbjct: 46  MAQRVLEERTEGTEKEVVGLKEMMLEMKKSMDRLTEEMRENHSYKKREESGTSDGSVMKL 105

Query: 61  KGKAKEVETTETG 74
           KGK +E + T+ G
Sbjct: 106 KGKMEEFDGTDEG 118

[Close]

BLAST of PI0013693 vs. ExPASy TrEMBL
Match: A0A5D3C936 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001720 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 40/73 (54.79%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MAQQQLQERMASTEKEMVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKL 60
          MAQ+Q++ER+  T+KE++ LKE++L +K +++RL+++IKE+ S RK+EESGTFD SV+KL
Sbjct: 1  MAQRQMEERVDGTKKEIMGLKEMMLEMKKAVERLADEIKESQSYRKREESGTFDGSVMKL 60

Query: 61 KGKAKEVE-TTET 73
          KGK +E++  TET
Sbjct: 61 KGKVEEMDLMTET 73

[Close]

BLAST of PI0013693 vs. NCBI nr
Match: KAA0041225.1 (uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-10
Identity = 37/70 (52.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MAQQQLQERMASTEKEMVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKL 60
          MAQ+Q++ER+  TEKE++ LKE++L +K S+DRL+++++EN S +KKEESGT D S++K+
Sbjct: 1  MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKM 60

Query: 61 KGKAKEVETT 71
          KGK +E + T
Sbjct: 61 KGKMEETDIT 70

[Close]

BLAST of PI0013693 vs. NCBI nr
Match: TYK16028.1 (uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-10
Identity = 37/70 (52.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MAQQQLQERMASTEKEMVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKL 60
          MAQ+Q++ER+  TEKE++ LKE++L +K S+DRL+++++EN S +KKEESGT D S++K+
Sbjct: 1  MAQRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSDGSIMKM 60

Query: 61 KGKAKEVETT 71
          KGK +E + T
Sbjct: 61 KGKMEETDIT 70

[Close]

BLAST of PI0013693 vs. NCBI nr
Match: KAA0036023.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-10
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1   MAQQQLQERMASTEKEMVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKL 60
           MAQ+ L+ER   TEKE+V LKE++L +K S+DRL+E+++EN S +K+EESGT D SV+KL
Sbjct: 46  MAQRVLEERTEGTEKEVVGLKEMMLEMKKSMDRLTEEMRENHSYKKREESGTSDGSVMKL 105

Query: 61  KGKAKEVETTETG 74
           KGK +E + T+ G
Sbjct: 106 KGKMEEFDGTDEG 118

[Close]

BLAST of PI0013693 vs. NCBI nr
Match: TYJ98820.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-10
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1   MAQQQLQERMASTEKEMVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKL 60
           MAQ+ L+ER   TEKE+V LKE++L +K S+DRL+E+++EN S +K+EESGT D SV+KL
Sbjct: 46  MAQRVLEERTEGTEKEVVGLKEMMLEMKKSMDRLTEEMRENHSYKKREESGTSDGSVMKL 105

Query: 61  KGKAKEVETTETG 74
           KGK +E + T+ G
Sbjct: 106 KGKMEEFDGTDEG 118

[Close]

BLAST of PI0013693 vs. NCBI nr
Match: KAA0063363.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK28065.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 2.8e-10
Identity = 37/70 (52.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MAQQQLQERMASTEKEMVDLKEILLGLKMSIDRLSEDIKENSSTRKKEESGTFDASVLKL 60
          MAQQQ++ER+  TEKE++ LKE++L +K S+DRL+++++EN S +KKEESGT + S++K+
Sbjct: 1  MAQQQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRENQSYKKKEESGTSNESIMKM 60

Query: 61 KGKAKEVETT 71
          KGK +E + T
Sbjct: 61 KGKMEETDIT 70

The following BLAST results are available for this feature:

BLAST of PI0013693 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013693 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TII1	8.1e-11	52.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CXP0	8.1e-11	52.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SZF0	1.1e-10	56.16	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BGA5	1.1e-10	56.16	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C936	1.4e-10	54.79	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of PI0013693 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041225.1	1.7e-10	52.86	uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]	[more]
TYK16028.1	1.7e-10	52.86	uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa]	[more]
KAA0036023.1	2.2e-10	56.16	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ98820.1	2.2e-10	56.16	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063363.1	2.8e-10	52.86	retrotransposon protein [Cucumis melo var. makuwa] >TYK28065.1 retrotransposon p...	[more]

BLAST of PI0013693 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013693.1	PI0013693.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003723	RNA binding