PI0013648 (gene) Melon (PI 482460) v1

Overview
NamePI0013648
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr02: 8484059 .. 8486851 (+)
RNA-Seq ExpressionPI0013648
SyntenyPI0013648
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCGGAGGTCGAGACATGGGTTCGAGCCTTCCAACATGGTATGTGTTATGGATCAAAGAAAATATTTCTACTCATAATCCGTGTGATTTAAGGAGGTTTTCTTTTTGTCCCATAAGAATACCAACGGAATACTTATGATCTCTCATTACAACTCTCTTGTAGCTTAATTGATCGCTTATTACAATTCTCTTGTAGCTTACAAGACACTGAAGGAAAATAGATGTGTTCTTACAAGTAATTTCCACCACAAAAGAAGATGATTTAGACATTTTCCAAACTTGTCTTTTGTTTGTAGGCGTGGATGAGGGGGTGAGGAAAAGAATTATGGGGCGACTGGCCTTAGCGGGGAGGCAACAACCCACTTCTGCCCTTATAAATATGATTCACTCACCATGATCAAGCAACTACCCTACCTTTTAGGAAAGTGCCCATGATCATTCTCACTAATGATTAACTACTCACGTACCGGTAACTAGTGTTTTTGATATAAACGTCAAATTATTAATTAAATTGTATTTAATAATTTTAATAGTATTTTTCAGTTTTATTCTTCTTTTAATAACATTTAAGTAGAGGTAATTTAGTATTTTCACATGTATTAAGGCTTTTATTGGGAAGCTATTTAAGCCTTATCTTTATGTCTTTTCTATCAATAGAAATTCTCCAATAGATGACAGAGTCTCATAACAACATTTTTGCAATTCTTGATTCAGGGTTACAAGCCAAGAATATTCAGGTAAGTTTGATTACCTTGTTTGTAGAGTGTTTAAACTTGGAGTGAGGAACTAGTTCTCTTTATCTTTTGGTCTTCGATTAAATTGTAATCCAAATCTAATACATTCTCTTGGTTGTTACCTAATTGATTTGGGGTTTTAGAATTTGATATTAGGGGTTCACTGATTGGATTCCTAATTATTAAGTCCTAGGTTTTCATATCATTTGATATTAAAGTTTAGGCTCTATATTGGGTATATGTTTTAATTGCTTTCTTGATTGAGTCTAGGATCTAATTAGGTTTCTGTTTTGTTCTTAAAAGAAAATTTGGAGGTTGAATTGAAATCCTAGTTTCAATTGGAATAAAAAAAAAAAGGAAAAATAAATTCGCTTGAAAAAAAGATTGAGAAGAAATTTGTGATTGAATTAGAAAAAAAAAGTTTTTAAAATCAAAAGAAAATTTGAGATTGACAGAAGATTCATGAAATTGAAACAAAAAGTTGGAAAAAAAAGAAAGAAAACTTCCTTCACGTCAAACAAGCACGCCATCCAGTCGACGGTGGTCTGAGAATTAAGAAATTTTTGGAAGCAAGTCAAACAAACATGTCAAATAGACACGTCAATTAAGCAGTTGAAGTTTAGTTTTTAAGCTGCGAAATTTCATAAGAAAATTAATAGTTTCTTAGGTGCATTTGTTTGATGATTTGAATTGGGTCTTCGGTAAAATTAATATCGCTAGTTTTTATTCTTAATTCTTTATTTCTTTATGTCATTGTTTTTGTCTAGTAGTTAACCTTTCTTGTTCATATTGCATAATTTTTTTAATTTTGAATATTAGATTCTTAATTCTAGATATCATAATTTTTATTGTTTCTTGTCTAGTTTGTTGAGTCTCAAACATTAGGTTCTTGATTTCTAGTTTTTGTTTTTGTTGCATTAAACTGGTTCTTGGCTTGAGTTTGACACTTTACAGTCATTCTTGTTTCGTTTGTTGTTGGCTTGCTCTTCTGAACTTGGTTGCAAAATCTTGGCTATCACCCTAGGGAAAAAATTCATATTTTTGAGGAGAATTATAAATTGAGTGTAAACATGAGTGAACTTCACCTATCGAGAGAAACACGTGAGGGAGTGATTATGAGGTCCACTTTTCTTTCATTTGCTTTTTTTTTTTGTTTTGCAACAATGGCAGCCAATGAAGGTGCTCCACAAGTGCAATTACAAGGACTCAATGGGGAAGTCATGCAACGCTTGGAGACTTTAATCAATGCGAGTTTAGATAGACTAAAACGAAGGTTGCAAACTAGCGAAAGACTTGAAGTAAGAAAATGAGTTGTGAGGGATCTTGAGAAGGAAGAAGATTTAGAGCAAAATGAATCTGACTTTGATCCTATTATATAGGAGCCTAGGAGAGGGGAGCAACATGACTCGAGAGGAAGGGGATGTTTTCGTAATAGGAGACTGCAAGATAGAAGAGAGAACAATCATGGAGGTTGAGGTTTTGGAAACATTACAGTTCAATTTCCAAAATTTCATGGTACGTCTAATCTTGAAGATTGTTTTCAATGGAAACATGAGGAAAAACATATCTTTCTTGGTAATGATTTCTCTGAAGAGAGAAGGTAACTATCTCTATTACACATTTTAAGGGGTATGCACAAACATGGTGGGATAAAGTTTGTTCTTGAGAGATTAGCTAGAACAGAGGGTTTAGTGGACATGACTAGAATTGAGAGAGCTCATGAAGTCTCGATTTGTACCAAAACATTACTTGAGAGATTGTGCACAATGATTTCAGGCGTTACACCAAAGGAGTAAGGTAGAGGATTATTTCAAGGATATATATGAGGATGAAGAGAACACTATGACCAGATTCCTTCATGGTTTAAATATTGATGTGGCTGAATGTGTTGAAATGCAAGAGTATAAGGATATGGAGAAATTAGTGCATCTTGTAGAAAATGTTGAAAAGCAACTTCAGAGGCACAAATCAAGGTACACTTCTAAATTTTTTTCCCATTTTACTTCTTAGAAACATGGTGACAAATCTACAGATTCTAAACTTGAAGCCAAGATAG

mRNA sequence

ATGGTTCGGAGGTCGAGACATGGGTTCGAGCCTTCCAACATGGGTTACAAGCCAAGAATATTCAGGAGCCTAGGAGAGGGGAGCAACATGACTCGAGAGGAAGGGGATGTTTTCGTAATAGGAGACTGCAAGATAGAAGAGAGAACAATCATGGAGGTTGAGGTTTTGGAAACATTACAGTTCAATTTCCAAAATTTCATGGCGTTACACCAAAGGAGTAAGGTAGAGGATTATTTCAAGGATATATATGAGGATGAAGAGAACACTATGACCAGATTCCTTCATGGTTTAAATATTGATGTGGCTGAATGTGTTGAAATGCAAGAGTATAAGGATATGGAGAAATTAGTGCATCTTGTAGAAAATGTTGAAAAGCAACTTCAGAGGCACAAATCAAGAAACATGGTGACAAATCTACAGATTCTAAACTTGAAGCCAAGATAG

Coding sequence (CDS)

ATGGTTCGGAGGTCGAGACATGGGTTCGAGCCTTCCAACATGGGTTACAAGCCAAGAATATTCAGGAGCCTAGGAGAGGGGAGCAACATGACTCGAGAGGAAGGGGATGTTTTCGTAATAGGAGACTGCAAGATAGAAGAGAGAACAATCATGGAGGTTGAGGTTTTGGAAACATTACAGTTCAATTTCCAAAATTTCATGGCGTTACACCAAAGGAGTAAGGTAGAGGATTATTTCAAGGATATATATGAGGATGAAGAGAACACTATGACCAGATTCCTTCATGGTTTAAATATTGATGTGGCTGAATGTGTTGAAATGCAAGAGTATAAGGATATGGAGAAATTAGTGCATCTTGTAGAAAATGTTGAAAAGCAACTTCAGAGGCACAAATCAAGAAACATGGTGACAAATCTACAGATTCTAAACTTGAAGCCAAGATAG

Protein sequence

MVRRSRHGFEPSNMGYKPRIFRSLGEGSNMTREEGDVFVIGDCKIEERTIMEVEVLETLQFNFQNFMALHQRSKVEDYFKDIYEDEENTMTRFLHGLNIDVAECVEMQEYKDMEKLVHLVENVEKQLQRHKSRNMVTNLQILNLKPR
Homology
[Close]
BLAST of PI0013648 vs. ExPASy TrEMBL
Match: A0A6J1DYV9 (uncharacterized protein LOC111025539 OS=Momordica charantia OX=3673 GN=LOC111025539 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.3e-09
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 0 

Query: 64  QNFMALHQRSK-VEDYFK---------DIYEDEENTMTRFLHGLNIDVAECVEMQEYKDM 123
           Q   AL Q +K VE+Y+K         DI E+EENTM RF++GLNI+VA  V++Q Y+DM
Sbjct: 154 QKLQALRQGNKSVEEYYKKMETLMERVDIDENEENTMARFINGLNIEVAYRVDLQMYEDM 213

Query: 124 EKLVHLVENVEKQLQRHKSR 134
           E+LVH    +EKQ+QR KSR
Sbjct: 214 EELVHFSVKIEKQIQRRKSR 233

[Close]
BLAST of PI0013648 vs. ExPASy TrEMBL
Match: A0A6J1DCS9 (uncharacterized protein LOC111019551 OS=Momordica charantia OX=3673 GN=LOC111019551 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.8e-09
Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = 0 

Query: 64  QNFMALHQRSK-VEDYFK---------DIYEDEENTMTRFLHGLNIDVAECVEMQEYKDM 123
           Q   AL Q +K VE+Y+K         DI E++ENTM RF++GLNI+VA+ V +Q Y+DM
Sbjct: 16  QKLQALRQGNKSVEEYYKEMETLMERLDIDENDENTMARFMNGLNIEVADRVHLQMYEDM 75

Query: 124 EKLVHLVENVEKQLQRHKSR 134
           ++LVH    +EKQ+QR KSR
Sbjct: 76  KELVHFSMKIEKQIQRRKSR 95

[Close]
BLAST of PI0013648 vs. ExPASy TrEMBL
Match: A0A6J1DET1 (uncharacterized protein LOC111020149 OS=Momordica charantia OX=3673 GN=LOC111020149 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-06
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = 0 

Query: 45  IEERTIMEVE-VLETLQFNFQNFMALHQRSK-VEDYFKD---------IYEDEENTMTRF 104
           IE + +M+ + VL     N +    L+Q +K  EDY+K+         + EDEE TM RF
Sbjct: 201 IEFKKLMKRKFVLSYYHANSRKLNKLYQGTKGAEDYYKEMDMLMSRFQLEEDEETTMARF 260

Query: 105 LHGLNIDVAECVEMQEYKDMEKLVHLVENVEKQLQRHKSR 134
           L GLN D+ + +++Q YKDME+L+HL   +E+Q QR   R
Sbjct: 261 LDGLNPDIVDKLDLQHYKDMEELLHLTVKIEEQNQRRAKR 300

[Close]
BLAST of PI0013648 vs. ExPASy TrEMBL
Match: A0A6J1DX46 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 OS=Momordica charantia OX=3673 GN=LOC111025268 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.1e-06
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 64  QNFMALHQRSK-VEDYFK---------DIYEDEENTMTRFLHGLNIDVAECVEMQEYKDM 123
           Q    L Q SK VEDY+K         D+ ED EN M RFL+GLN ++A+ V++Q Y ++
Sbjct: 97  QKLQVLRQGSKSVEDYYKEMDTLMNRLDLEEDMENLMARFLNGLNKEIADKVDLQPYFNI 156

Query: 124 EKLVHLVENVEKQLQRHKSR 134
           E+++HL   +EKQLQR   R
Sbjct: 157 EEMLHLAIKIEKQLQRRSQR 176

[Close]
BLAST of PI0013648 vs. ExPASy TrEMBL
Match: A0A2N9F1V6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8974 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.1e-06
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 0 

Query: 63  FQNFMALHQRSK-VEDYFKD---------IYEDEENTMTRFLHGLNIDVAECVEMQEYKD 122
           +Q F  L QRS+ VEDY K+         + ED E TM RFL GLN D+A  +E+Q Y +
Sbjct: 267 YQKFQHLTQRSRSVEDYHKEMEVAMIRANVEEDREATMARFLSGLNRDIANVIELQHYVE 326

Query: 123 MEKLVHLVENVEKQLQRHKSRNMVTNLQI 142
           +E +VH+   VE+QL+R  +     N  I
Sbjct: 327 IEDMVHMAMKVERQLKRKGTARRALNTHI 355

[Close]
BLAST of PI0013648 vs. NCBI nr
Match: XP_022159097.1 (uncharacterized protein LOC111025539 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 4.8e-09
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 0 

Query: 64  QNFMALHQRSK-VEDYFK---------DIYEDEENTMTRFLHGLNIDVAECVEMQEYKDM 123
           Q   AL Q +K VE+Y+K         DI E+EENTM RF++GLNI+VA  V++Q Y+DM
Sbjct: 154 QKLQALRQGNKSVEEYYKKMETLMERVDIDENEENTMARFINGLNIEVAYRVDLQMYEDM 213

Query: 124 EKLVHLVENVEKQLQRHKSR 134
           E+LVH    +EKQ+QR KSR
Sbjct: 214 EELVHFSVKIEKQIQRRKSR 233

[Close]
BLAST of PI0013648 vs. NCBI nr
Match: XP_022151643.1 (uncharacterized protein LOC111019551 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = 0 

Query: 64  QNFMALHQRSK-VEDYFK---------DIYEDEENTMTRFLHGLNIDVAECVEMQEYKDM 123
           Q   AL Q +K VE+Y+K         DI E++ENTM RF++GLNI+VA+ V +Q Y+DM
Sbjct: 16  QKLQALRQGNKSVEEYYKEMETLMERLDIDENDENTMARFMNGLNIEVADRVHLQMYEDM 75

Query: 124 EKLVHLVENVEKQLQRHKSR 134
           ++LVH    +EKQ+QR KSR
Sbjct: 76  KELVHFSMKIEKQIQRRKSR 95

[Close]
BLAST of PI0013648 vs. NCBI nr
Match: XP_022152413.1 (uncharacterized protein LOC111020149 [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 4.9e-06
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = 0 

Query: 45  IEERTIMEVE-VLETLQFNFQNFMALHQRSK-VEDYFKD---------IYEDEENTMTRF 104
           IE + +M+ + VL     N +    L+Q +K  EDY+K+         + EDEE TM RF
Sbjct: 201 IEFKKLMKRKFVLSYYHANSRKLNKLYQGTKGAEDYYKEMDMLMSRFQLEEDEETTMARF 260

Query: 105 LHGLNIDVAECVEMQEYKDMEKLVHLVENVEKQLQRHKSR 134
           L GLN D+ + +++Q YKDME+L+HL   +E+Q QR   R
Sbjct: 261 LDGLNPDIVDKLDLQHYKDMEELLHLTVKIEEQNQRRAKR 300

[Close]
BLAST of PI0013648 vs. NCBI nr
Match: XP_022158803.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 6.5e-06
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 64  QNFMALHQRSK-VEDYFK---------DIYEDEENTMTRFLHGLNIDVAECVEMQEYKDM 123
           Q    L Q SK VEDY+K         D+ ED EN M RFL+GLN ++A+ V++Q Y ++
Sbjct: 97  QKLQVLRQGSKSVEDYYKEMDTLMNRLDLEEDMENLMARFLNGLNKEIADKVDLQPYFNI 156

Query: 124 EKLVHLVENVEKQLQRHKSR 134
           E+++HL   +EKQLQR   R
Sbjct: 157 EEMLHLAIKIEKQLQRRSQR 176

[Close]
BLAST of PI0013648 vs. NCBI nr
Match: GFY97633.1 (hypothetical protein Acr_12g0001740 [Actinidia rufa])

HSP 1 Score: 61.2 bits (147), Expect = 8.4e-06
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 0 

Query: 75  VEDYFKD---------IYEDEENTMTRFLHGLNIDVAECVEMQEYKDMEKLVHLVENVEK 134
           V+DY+KD         + ED E TM RFL+GLN D+A  VE+Q Y ++E +VH+  NVE+
Sbjct: 142 VDDYYKDMEIAMIRGNVEEDREATMARFLNGLNWDIANVVELQHYMELEDMVHMAINVER 201

The following BLAST results are available for this feature:
BLAST of PI0013648 vs.
Match NameE-valueIdentityDescription
BLAST of PI0013648 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DYV92.3e-0952.50uncharacterized protein LOC111025539 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DCS98.8e-0950.00uncharacterized protein LOC111019551 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1DET12.4e-0640.00uncharacterized protein LOC111020149 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1DX463.1e-0645.00LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 OS=Momordica charantia... [more]
A0A2N9F1V63.1e-0641.57Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8974 PE=4 SV=1[more]
BLAST of PI0013648 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159097.14.8e-0952.50uncharacterized protein LOC111025539 [Momordica charantia][more]
XP_022151643.11.8e-0850.00uncharacterized protein LOC111019551 [Momordica charantia][more]
XP_022152413.14.9e-0640.00uncharacterized protein LOC111020149 [Momordica charantia][more]
XP_022158803.16.5e-0645.00LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia][more]
GFY97633.18.4e-0646.38hypothetical protein Acr_12g0001740 [Actinidia rufa][more]
BLAST of PI0013648 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 113..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0013648.1PI0013648.1mRNA