PI0013637 (gene) Melon (PI 482460) v1

Overview


Name	PI0013637
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	50S ribosomal protein L20
Location	chr11: 8559375 .. 8562469 (+)
RNA-Seq Expression	PI0013637
Synteny	PI0013637

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTGGATACAACGCATCAATGCTGGCACACGCCTTCATGGGGTATGGCTATTTTCTTTGAAAGTTCCTTATTGGACTACCACAATTATTTATGTGACCACAGTGCATCATTGTGCCTCTATAGAATTACTTTTTGTTTTGAATTTCTTATTTGGTTTAGTTCTTCCTTTCTTTTCTTGTTTTATTTTGTTTTCCTGTAAAAGATACACTAAAACATGGTAAAAAAGAAGACAAATAGGATCAGGGATGGGGATTGGGATTTCAACTATTTCCTGTCTTTGTTCATAATTTTGATTATAGTGAATAAGATCGAATGTTGAGGAACTTCTTGTGGGGAGGGATCAATGAGGGGAAGGGGAGGGTTTCATTTCGTAAGCGGGAGTTGGTGGTGAAGCTAGTGGAATTGGAGGATTAAGAAATGGGATCTTGAGATACATGACGAAGTGGTACTAGCTAAGTGGTTGTGGTTGTTCTTTATGGAGCATGGTACAAAGTTATAGTAAGCAAAAATATGGCCCACAACCTTCTAAGGTGGGTGGCAAGAATTGGTTCTCAGGGACGTAGTAAAAACGTTTGGAAATCTATTGCACATGGATTCCCTTATTTCTCTCGATGTATTAGATGCTTTGTTGGGGAAGATTTGAAAGTTTACTTTTGGAAAAAAGGGGAGCTTGAGATTATGTAATGAGGTGCTACGTGCTAGATGGTTGTGGTTATTCTTCATGGAGCATGGTACAAAGTTATTGTGCCAAGGATGGCCCACACCCTTCTAAGGTATGTGGCAAGCATTGATTCTAACTTCTAAGGGACTTGGTAAAAACCTTTGGAAATCTATTGCTCATGGATTCCCTTTTCTCTCGGTGTATTAGATACTTTGTTCGGGAAGATGAAAGTTTATCTTTGAGAAGATTGTTGATTTTGTGACAATCCTTCTGTGAGTTGTTTCCTCATTTATATCACCTGTCTCAAAAAGCATCATTCTCTTTCTGATGCCTTGTCATTTCCTTGGGATTTAATCCTCCTCTTTCTCTTTCTGATACAGAGGTTGTTGATGTGGTGGTGGTTCTTTGATTTTCCCCTCTACAAGACCAGCACAAGTGTTTTTAGGGAGAGAATTCTAGGTTGTGGTCTCTTGATCCTTCAAAAGGTTCTCCTGTAAATCCCATTTTCACATTCTGTTTGTCTCTTCACTACCCTTGGTTGCATAAGTTTTCGCTGCTATTTGGTTGAGTTAAATACCAAAGTAGGCTATTTTTTTTTTGGCAAGTTTTACATGGTAGGTTGAACACTCTAGATTGCGTTCCATGTCATTCTTCCTTTGTATTGCATTTGCAATGGCCCATCATTTGCATGCAAAGGAGGACCTTCACCTCCGTTTGTGGGGTGTTGATCTAGAATAGGTGGTTGAGCTTGTTTGGCTTACAATTAGCGTGGATGAGAGATTGGTTCTCATGATTGAGGGTGTGGACTTGTTTTTGCCTTTTTCGTGAGAGAGGCCAAGTATTGTACTATTGTGGCATGTTGTTATTTGGGTTATCTGGATTAAAAGCAATATCATGATTTTTAGAAAGGTGGAAAGATCGAATGAGGAAGTGATATGAAAACCTTAGGAATTTGAAAAATTATGAACCCTTTGTTTATTCGAACCCCTAATAACAAATTCTAAAACCCCCAAATCGATTCAATCCAACTACAAGGAGAGTTAAAAAAGGTTACCTTGTGATCGAAGACCATGAGATAAGGAGAACTACTCCCTTACTCAAGGTTTGAACACTCCATAGGCAAGTTAATCAATCTTACCTGAATGCTCAAGCATGCAACTCTAGATCAAGAATTGCAAAAAGGATGGCGATAAATCTCTGTCATTAGCACCAAGGAAAAATATCATCCCTAAATCCCAATCCAAAAATTGTTTTGTACATTACAACTTAATGGTTAGGCTCTATAACCTCCCAAACCCTAATGTGTGCCACATCATAACCTGAGTAAAATGGCAAAAGATACCCTGATTTAATATGTTTTAGAAAAGGTAAAATTGGAAAATAAGAAAATTACTTAAAAATTTATAAATAAGTATAATTAATATTTGATGTCTGAATGGTTCATATCAGAAAGTTGGGAAGTGTGGGAGGAGGTTACTTTTAATGTCTCCTTGTGGATATTGTTTAATAGGCATTTTTGTACTATGACTTTGGTTTGATTTGCTGTCTCTCACTTTTTTGGTTCTTTCTAATATTTTTTTCCTTTTTGCATGTATTTGTAGTTTATTTTATTTATTTATTTTGAAATGAAGCTCGGTTTCCTACCCCCAAAAGAATTTAGATCATTTTTAGCTTCTGATCTTCTGATATCCTCACATCAATTTTTTAATTTCCACCTTTGATATCCCACATCCTTTAATTTTAGCTTTCATTTCTTCTACAATTCATCTCTGTAATTTTATGCCAACTTGACCTGCCTGGATAAGCTGCATACGTTTCACATGATTCATGAATTTAGCACTTTTAGCTTGAATGGTTTGGTTTTGTGATGGGAGGAGTAAAACGTGCTTTAGGTCAAATATCTGCTGTATTATTGTGTTCTATATTGGTGTAGGATTCTCATTTTCTACATCAGTGTGAAGTGTGTGAACTGCCTCTTATTTCCAATCAACATTGAACTCTTTACCAAGTCACTAAAATGTTTACATCTATATATTTGGGCAATTTTCCATGTAGAGAGATACTAACGTTTCTTTTGTCTCCTTCCCTACCATTTTAGGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAATGTTCAACTAAATAGAAAAGTATTATCAGAGCTCTCAATGCACGAACCTTACAGTTTCAAGGCCCTGGTAGACATCTCTAGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA

mRNA sequence

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTGGATACAACGCATCAATGCTGGCACACGCCTTCATGGGAAAAGTATTATCAGAGCTCTCAATGCACGAACCTTACAGTTTCAAGGCCCTGGTAGACATCTCTAGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA

Coding sequence (CDS)

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTGGATACAACGCATCAATGCTGGCACACGCCTTCATGGGAAAAGTATTATCAGAGCTCTCAATGCACGAACCTTACAGTTTCAAGGCCCTGGTAGACATCTCTAGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA

Protein sequence

MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLGYNASMLAHAFMGKVLSELSMHEPYSFKALVDISSNAFPGNKNVVFPPKKDAASMIV

Homology

[Close]

BLAST of PI0013637 vs. ExPASy Swiss-Prot
Match: B6IPJ8 (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplT PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-14
Identity = 48/101 (47.52%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL------------GYN 64
           K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R L            G  
Sbjct: 16  KVLKLAKGYRGRSSKCYRIALERVEKALRYAYRDRRNRKRDFRGLWIQRINAGARLHGLT 75

Query: 65  ASMLAHAFM-------GKVLSELSMHEPYSFKALVDISSNA 87
            S   H           KVLS+++  EP SFKALV+ +  A
Sbjct: 76  YSKFMHGLKRAGIEVDRKVLSDIAAREPESFKALVEQAQKA 116

[Close]

BLAST of PI0013637 vs. ExPASy Swiss-Prot
Match: Q5FH69 (50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=rplT PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-14
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLG-------------- 64
           K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSL               
Sbjct: 16  KVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGLL 75

Query: 65  -----YNASMLAHAFMGKVLSELSMHEPYSFKALVDISSNA 87
                Y  S+       K+L+++++H   +FK +VD++  A
Sbjct: 76  YSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEA 116

[Close]

BLAST of PI0013637 vs. ExPASy Swiss-Prot
Match: Q5HC39 (50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Welgevonden) OX=254945 GN=rplT PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-14
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLG-------------- 64
           K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSL               
Sbjct: 16  KVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGLL 75

Query: 65  -----YNASMLAHAFMGKVLSELSMHEPYSFKALVDISSNA 87
                Y  S+       K+L+++++H   +FK +VD++  A
Sbjct: 76  YSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEA 116

[Close]

BLAST of PI0013637 vs. ExPASy Swiss-Prot
Match: Q3YSX0 (50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rplT PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.8e-14
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL---GYNASMLAHAFM 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSL     NA+   H  +
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAARQHGLL 75

Query: 65  ----------------GKVLSELSMHEPYSFKALVDISSNA 87
                            KVL++++++   +FK +VDI+  A
Sbjct: 76  YSDFIHGLSLANITLNRKVLADMAVNNQDNFKQIVDITKEA 116

[Close]

BLAST of PI0013637 vs. ExPASy Swiss-Prot
Match: Q2GHR2 (50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas) OX=205920 GN=rplT PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-13
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL---GYNASMLAHAFM 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSL     NA++  H  +
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQHGLL 75

Query: 65  ----------------GKVLSELSMHEPYSFKALVDISSNA 87
                            KVL++++++    FK +VD+   A
Sbjct: 76  YSDFIHGLSLANVTLNRKVLADMAVNHKDHFKQIVDLIKEA 116

[Close]

BLAST of PI0013637 vs. ExPASy TrEMBL
Match: A0A1S4E159 (50S ribosomal protein L20 OS=Cucumis melo OX=3656 GN=LOC103496283 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.1e-40
Identity = 96/125 (76.80%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL----------- 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL           
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  -GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVDISSNAFPGNKNVVFPPKKDA 107
            G N     H  M        KVLSELSMHEPYSFKALVDIS NAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

[Close]

BLAST of PI0013637 vs. ExPASy TrEMBL
Match: A0A0A0KD68 (50S ribosomal protein L20 OS=Cucumis sativus OX=3659 GN=Csa_6G135990 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 95/125 (76.00%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL----------- 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL           
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  -GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVDISSNAFPGNKNVVFPPKKDA 107
            G N     H  M        KVLSE+SMHEPYSFKALVDIS NAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

[Close]

BLAST of PI0013637 vs. ExPASy TrEMBL
Match: A0A6J1FUI3 (50S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111448251 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.6e-39
Identity = 95/125 (76.00%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL----------- 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL           
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  -GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVDISSNAFPGNKNVVFPPKKDA 107
            G N     H  M        KVLSELSMHEPYSFKALVDIS NAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

[Close]

BLAST of PI0013637 vs. ExPASy TrEMBL
Match: A0A6J1JCG1 (50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111483787 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.4e-39
Identity = 94/125 (75.20%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL----------- 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL           
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  -GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVDISSNAFPGNKNVVFPPKKDA 107
            G N     H  M        KVLSELSMHEPYSFKALVDIS NAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

[Close]

BLAST of PI0013637 vs. ExPASy TrEMBL
Match: A0A6J1KY75 (50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111499805 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.9e-37
Identity = 90/125 (72.00%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL----------- 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL           
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  -GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVDISSNAFPGNKNVVFPPKKDA 107
            G N     H  M        KVLSELSMHEPYSFK+LVDIS NAFPGNKNVVFPPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120

[Close]

BLAST of PI0013637 vs. NCBI nr
Match: XP_008456292.1 (PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_008456294.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_008456295.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_016901960.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_016901961.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 96/125 (76.80%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL----------- 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL           
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  -GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVDISSNAFPGNKNVVFPPKKDA 107
            G N     H  M        KVLSELSMHEPYSFKALVDIS NAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

[Close]

BLAST of PI0013637 vs. NCBI nr
Match: XP_004139908.1 (uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744108.1 uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744109.1 uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744110.1 uncharacterized protein LOC101216644 [Cucumis sativus] >KGN46794.1 hypothetical protein Csa_020818 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 3.2e-39
Identity = 95/125 (76.00%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL----------- 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL           
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  -GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVDISSNAFPGNKNVVFPPKKDA 107
            G N     H  M        KVLSE+SMHEPYSFKALVDIS NAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

[Close]

BLAST of PI0013637 vs. NCBI nr
Match: XP_022943497.1 (uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943498.1 uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943499.1 uncharacterized protein LOC111448251 [Cucurbita moschata] >KAG6570598.1 hypothetical protein SDJN03_29513, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010448.1 rplT [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.0 bits (432), Expect = 5.5e-39
Identity = 95/125 (76.00%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL----------- 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL           
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  -GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVDISSNAFPGNKNVVFPPKKDA 107
            G N     H  M        KVLSELSMHEPYSFKALVDIS NAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

[Close]

BLAST of PI0013637 vs. NCBI nr
Match: XP_022985864.1 (uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985865.1 uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985866.1 uncharacterized protein LOC111483787 [Cucurbita maxima])

HSP 1 Score: 170.6 bits (431), Expect = 7.1e-39
Identity = 94/125 (75.20%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL----------- 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL           
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  -GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVDISSNAFPGNKNVVFPPKKDA 107
            G N     H  M        KVLSELSMHEPYSFKALVDIS NAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

[Close]

BLAST of PI0013637 vs. NCBI nr
Match: XP_038901625.1 (50S ribosomal protein L20 [Benincasa hispida] >XP_038901626.1 50S ribosomal protein L20 [Benincasa hispida])

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 94/125 (75.20%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL----------- 60
           MNKDKIFKLAKG+RGRAKNCIRIARERVEK LQYSYRDRRNKKRDMRSL           
Sbjct: 1   MNKDKIFKLAKGYRGRAKNCIRIARERVEKGLQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  -GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVDISSNAFPGNKNVVFPPKKDA 107
            G N     H  M        KVLSELSMHEPYSFKALVDIS NAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

[Close]

BLAST of PI0013637 vs. TAIR 10
Match: AT1G16740.1 (Ribosomal protein L20 )

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-33
Identity = 80/124 (64.52%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL----------- 60
           MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR L           
Sbjct: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 60

Query: 61  -GYNASMLAHAFM-------GKVLSELSMHEPYSFKALVDISSNAFPGNKNVVFPPKKDA 106
            G N     H  M        KVLSELSMHEPYSFKALVD+S  +FPGNKNVV   +K  
Sbjct: 61  HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQASRKVD 120

The following BLAST results are available for this feature:

BLAST of PI0013637 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6IPJ8	1.7e-14	47.52	50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
Q5FH69	2.8e-14	42.57	50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=...	[more]
Q5HC39	2.8e-14	42.57	50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Welgevonden) OX=25494...	[more]
Q3YSX0	4.8e-14	45.54	50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rplT PE=...	[more]
Q2GHR2	1.8e-13	44.55	50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arka...	[more]

BLAST of PI0013637 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E159	9.1e-40	76.80	50S ribosomal protein L20 OS=Cucumis melo OX=3656 GN=LOC103496283 PE=3 SV=1	[more]
A0A0A0KD68	1.5e-39	76.00	50S ribosomal protein L20 OS=Cucumis sativus OX=3659 GN=Csa_6G135990 PE=3 SV=1	[more]
A0A6J1FUI3	2.6e-39	76.00	50S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111448251 PE=3 SV=...	[more]
A0A6J1JCG1	3.4e-39	75.20	50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111483787 PE=3 SV=1	[more]
A0A6J1KY75	1.9e-37	72.00	50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111499805 PE=3 SV=1	[more]

BLAST of PI0013637 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456292.1	1.9e-39	76.80	PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_008456294.1 PREDICTED: 5...	[more]
XP_004139908.1	3.2e-39	76.00	uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744108.1 uncharact...	[more]
XP_022943497.1	5.5e-39	76.00	uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943498.1 unchar...	[more]
XP_022985864.1	7.1e-39	75.20	uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985865.1 uncharac...	[more]
XP_038901625.1	1.2e-38	75.20	50S ribosomal protein L20 [Benincasa hispida] >XP_038901626.1 50S ribosomal prot...	[more]

BLAST of PI0013637 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16740.1	2.1e-33	64.52	Ribosomal protein L20	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005813	Ribosomal protein L20	PRINTS	PR00062	RIBOSOMALL20	coord: 31..60 score: 38.18 coord: 1..30 score: 33.03
IPR005813	Ribosomal protein L20	PFAM	PF00453	Ribosomal_L20	coord: 3..49 e-value: 1.1E-15 score: 57.6
IPR005813	Ribosomal protein L20	PANTHER	PTHR10986	39S RIBOSOMAL PROTEIN L20	coord: 1..49 coord: 62..104
IPR005813	Ribosomal protein L20	CDD	cd07026	Ribosomal_L20	coord: 5..81 e-value: 1.64413E-25 score: 89.8509
None	No IPR available	GENE3D	6.10.160.10		coord: 1..45 e-value: 2.6E-20 score: 74.3
None	No IPR available	PANTHER	PTHR10986:SF16	50S RIBOSOMAL PROTEIN L20	coord: 1..49
None	No IPR available	PANTHER	PTHR10986:SF16	50S RIBOSOMAL PROTEIN L20	coord: 62..104
IPR035566	Ribosomal protein L20, C-terminal	SUPERFAMILY	74731	Ribosomal protein L20	coord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013637.1	PI0013637.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome