PI0013492 (gene) Melon (PI 482460) v1

Overview


Name	PI0013492
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	B3 domain-containing transcription repressor VAL2
Location	chr08: 23282388 .. 23283305 (-)
RNA-Seq Expression	PI0013492
Synteny	PI0013492

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGGTAATATTATGATAAAAATGTAAGAGGTGTTATGGGGAAGTGTAAGGAGTGTTATGGAAGATTGAAAAAAAGACAAAGGAGATTAAGATAAATAGAACCCCAAATAAATAGTGAGTTATCATAGTCTAGTCTAATCCCCTTAAACCCCACCCAACGCCACCCAACGCATAGAAGAGAGAATTTAACCCTTTTTTTTTAGAAAAATATAATTGAACAAACTTGCACCACACATCTTTTCCTTCTCCTTCTGTTGTCATGCGCAGCACTAAGTAATTATTTTATTTGTTAAATATTTTAACAATCAGGCCTTTTCTTTTCATTTGTAGACCCTCCCACCACCAACTACTGCACCCAACCCACCCCGTCAGACGCCGCTCCTGCACCAAGAACTCTCAGCGGCTGCCAAACGAGCCATATCTGCGACGTTACTGGTGATCCACAAGCAGCGCCCACACAATCTCAGACCTCCGGCGTTTCGAAAACCACCAGCACGACGACCTCAGATCTGAGGTAGCTCCAGCCAGCAACGACGCCCGCCGCATTTCTCGACTACCCACAGCCCGAACTAATTTGGATCCCCTAGACCGTAGTGTTTAGATCTGTGGGTTCGAATTATTTCGATCACATTCCAGCAAGGACACAAGTCCTTTTTAATAAGATTTTGGCAGTAACTAAACTATTCAATTAGACTTTTTCGAATTAGATTAGAGTGTATTAAAGTATTTTCTAACCTCGAAATTCTTCTGTGTTTAGGTTCAGATAAGTTTCAGGTTGATTGAATTACGGTCGACTTCTGGTAAGAATAGTTGGTAACCCTCTTGCCTCTCGGTTTTGATTAAGGATTTCAAAGCGAGTGCTAAGCTCGAGACCTTTTTTTTTTTTTTTTTTCAGGAGTCTATCGAATAGTTTAA

mRNA sequence

ATGATAGACCCTCCCACCACCAACTACTGCACCCAACCCACCCCGTCAGACGCCGCTCCTGCACCAAGAACTCTCAGCGGCTGCCAAACGAGCCATATCTGCGACGTTACTGGTGATCCACAAGCAGCGCCCACACAATCTCAGACCTCCGGCGTTTCGAAAACCACCAGCACGACGACCTCAGATCTGAGATCTGTGGGTTCGAATTATTTCGATCACATTCCAGCAAGGACACAAGTCCTTTTTAATAAGATTTTGGCAGTTCAGATAAGTTTCAGGTTGATTGAATTACGGTCGACTTCTGGAGTCTATCGAATAGTTTAA

Coding sequence (CDS)

ATGATAGACCCTCCCACCACCAACTACTGCACCCAACCCACCCCGTCAGACGCCGCTCCTGCACCAAGAACTCTCAGCGGCTGCCAAACGAGCCATATCTGCGACGTTACTGGTGATCCACAAGCAGCGCCCACACAATCTCAGACCTCCGGCGTTTCGAAAACCACCAGCACGACGACCTCAGATCTGAGATCTGTGGGTTCGAATTATTTCGATCACATTCCAGCAAGGACACAAGTCCTTTTTAATAAGATTTTGGCAGTTCAGATAAGTTTCAGGTTGATTGAATTACGGTCGACTTCTGGAGTCTATCGAATAGTTTAA

Protein sequence

MIDPPTTNYCTQPTPSDAAPAPRTLSGCQTSHICDVTGDPQAAPTQSQTSGVSKTTSTTTSDLRSVGSNYFDHIPARTQVLFNKILAVQISFRLIELRSTSGVYRIV

Homology

[Close]

BLAST of PI0013492 vs. ExPASy TrEMBL
Match: A0A5D3DMR2 (B3 domain-containing transcription repressor VAL2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00180 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.1e-19
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 2   IDPPTTNYCTQPTPSDAAPAPRTLSGCQTSHICDVTGDPQAAPTQSQTSGVSKTTSTTTS 61
           +DPPTTNYCTQPTPSDAAPA R+L+GCQTSHI D TGDPQA PTQSQTS V++T +TTTS
Sbjct: 50  VDPPTTNYCTQPTPSDAAPARRSLTGCQTSHISDATGDPQAPPTQSQTSRVTRTDTTTTS 109

Query: 62  DLRSVGS 69
           DLR+  S
Sbjct: 110 DLRASSS 116

[Close]

BLAST of PI0013492 vs. ExPASy TrEMBL
Match: A0A5A7TSM7 (B3 domain-containing transcription repressor VAL2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005900 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.0e-19
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 2   IDPPTTNYCTQPTPSDAAPAPRTLSGCQTSHICDVTGDPQAAPTQSQTSGVSKTTSTTTS 61
           +DPPTTNYCTQPTPSDAAPA R+L+GCQTSHI D TGDPQA PTQSQTS V++T +TTTS
Sbjct: 67  VDPPTTNYCTQPTPSDAAPARRSLTGCQTSHISDATGDPQAPPTQSQTSCVTRTDTTTTS 126

Query: 62  DLRSVGS 69
           DLR+  S
Sbjct: 127 DLRASSS 133

[Close]

BLAST of PI0013492 vs. ExPASy TrEMBL
Match: A0A0A0LA20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G728050 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.8e-10
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 4  PPTTNYCTQPTPSDAAPAPRTLSGCQTSHICDVTGDPQAAPTQSQTSGVSKTTSTTTSDL 63
          PPTT     P PSDAAP+PR+L GCQT+H CD TGDPQ    QSQTS V++TTSTTTSDL
Sbjct: 27 PPTT--APNPPPSDAAPSPRSLCGCQTNHFCDGTGDPQ----QSQTSRVTRTTSTTTSDL 81

Query: 64 R 65
          R
Sbjct: 87 R 81

[Close]

BLAST of PI0013492 vs. NCBI nr
Match: TYK24905.1 (B3 domain-containing transcription repressor VAL2 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 6.3e-19
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 2   IDPPTTNYCTQPTPSDAAPAPRTLSGCQTSHICDVTGDPQAAPTQSQTSGVSKTTSTTTS 61
           +DPPTTNYCTQPTPSDAAPA R+L+GCQTSHI D TGDPQA PTQSQTS V++T +TTTS
Sbjct: 50  VDPPTTNYCTQPTPSDAAPARRSLTGCQTSHISDATGDPQAPPTQSQTSRVTRTDTTTTS 109

Query: 62  DLRSVGS 69
           DLR+  S
Sbjct: 110 DLRASSS 116

[Close]

BLAST of PI0013492 vs. NCBI nr
Match: KAA0044229.1 (B3 domain-containing transcription repressor VAL2 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 8.3e-19
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 2   IDPPTTNYCTQPTPSDAAPAPRTLSGCQTSHICDVTGDPQAAPTQSQTSGVSKTTSTTTS 61
           +DPPTTNYCTQPTPSDAAPA R+L+GCQTSHI D TGDPQA PTQSQTS V++T +TTTS
Sbjct: 67  VDPPTTNYCTQPTPSDAAPARRSLTGCQTSHISDATGDPQAPPTQSQTSCVTRTDTTTTS 126

Query: 62  DLRSVGS 69
           DLR+  S
Sbjct: 127 DLRASSS 133

[Close]

BLAST of PI0013492 vs. NCBI nr
Match: KGN58688.1 (hypothetical protein Csa_001621 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 4  PPTTNYCTQPTPSDAAPAPRTLSGCQTSHICDVTGDPQAAPTQSQTSGVSKTTSTTTSDL 63
          PPTT     P PSDAAP+PR+L GCQT+H CD TGDPQ    QSQTS V++TTSTTTSDL
Sbjct: 27 PPTT--APNPPPSDAAPSPRSLCGCQTNHFCDGTGDPQ----QSQTSRVTRTTSTTTSDL 81

Query: 64 R 65
          R
Sbjct: 87 R 81

The following BLAST results are available for this feature:

BLAST of PI0013492 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013492 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DMR2	3.1e-19	77.61	B3 domain-containing transcription repressor VAL2 OS=Cucumis melo var. makuwa OX...	[more]
A0A5A7TSM7	4.0e-19	77.61	B3 domain-containing transcription repressor VAL2 OS=Cucumis melo var. makuwa OX...	[more]
A0A0A0LA20	5.8e-10	68.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G728050 PE=4 SV=1	[more]

BLAST of PI0013492 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK24905.1	6.3e-19	77.61	B3 domain-containing transcription repressor VAL2 [Cucumis melo var. makuwa]	[more]
KAA0044229.1	8.3e-19	77.61	B3 domain-containing transcription repressor VAL2 [Cucumis melo var. makuwa]	[more]
KGN58688.1	1.2e-09	68.85	hypothetical protein Csa_001621 [Cucumis sativus]	[more]

BLAST of PI0013492 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013492.1	PI0013492.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding