PI0013488 (gene) Melon (PI 482460) v1

Overview
NamePI0013488
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr05: 17953447 .. 17953981 (-)
RNA-Seq ExpressionPI0013488
SyntenyPI0013488
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCATCTATATGTCAATGTGAGTAGGATGAGTTTGGATATAAACTTGAATTCTGAACCATTCGGTCAATTTGAAGCCCGAACTCAGCTTATTGACCCTAACTCTGAACCAGTTGCATCGCTGATAAACGACGACGAAGAAATGGTGGCTAATAATGAATATAGGAACTTTCGAATAGAAACGGACGATGAGTTTGAAGAGTTTGACTTTGACGATCGTGAACATGAATTACCATCAAATACATTCACTCAATTAGATATGGATGTAATAGACAGTATTCATGAGCACGATCCAATTGTAGCCAGCATTTGGAGTAGGTTATGGTAGTCCAATGATGATGATGCCAGCATTTGGAGTAGGATATTGTGATTTTGAGGTTGGTATAGGATATTATGACTCAGGGGTTGGTCCATCGTCTTCATACATGGATGTTGGTCCATCAACTTCTTACATGCATGGATACGAACGCGACCGCAGAGAACAAAACGAATATCTATACTATGAAGCATCTAAAGACGTATCAGATCCATAA

mRNA sequence

ATGGTTCATCTATATGTCAATGTGAGTAGGATGAGTTTGGATATAAACTTGAATTCTGAACCATTCGGTCAATTTGAAGCCCGAACTCAGCTTATTGACCCTAACTCTGAACCAGTTGCATCGCTGATAAACGACGACGAAGAAATGGTGGCTAATAATGAATATAGGAACTTTCGAATAGAAACGGACGATGAGTTTGAAGAGTTTGACTTTGACGATCGTGAACATGAATTACCATCAAATACATTCACTCAATTAGATATGGATGTAATAGACAGTATTCATGAGCACGATCCAATTGTAGCCAGCATTTGGAGATATTATGACTCAGGGGTTGGTCCATCGTCTTCATACATGGATGTTGGTCCATCAACTTCTTACATGCATGGATACGAACGCGACCGCAGAGAACAAAACGAATATCTATACTATGAAGCATCTAAAGACGTATCAGATCCATAA

Coding sequence (CDS)

ATGGTTCATCTATATGTCAATGTGAGTAGGATGAGTTTGGATATAAACTTGAATTCTGAACCATTCGGTCAATTTGAAGCCCGAACTCAGCTTATTGACCCTAACTCTGAACCAGTTGCATCGCTGATAAACGACGACGAAGAAATGGTGGCTAATAATGAATATAGGAACTTTCGAATAGAAACGGACGATGAGTTTGAAGAGTTTGACTTTGACGATCGTGAACATGAATTACCATCAAATACATTCACTCAATTAGATATGGATGTAATAGACAGTATTCATGAGCACGATCCAATTGTAGCCAGCATTTGGAGATATTATGACTCAGGGGTTGGTCCATCGTCTTCATACATGGATGTTGGTCCATCAACTTCTTACATGCATGGATACGAACGCGACCGCAGAGAACAAAACGAATATCTATACTATGAAGCATCTAAAGACGTATCAGATCCATAA

Protein sequence

MVHLYVNVSRMSLDINLNSEPFGQFEARTQLIDPNSEPVASLINDDEEMVANNEYRNFRIETDDEFEEFDFDDREHELPSNTFTQLDMDVIDSIHEHDPIVASIWRYYDSGVGPSSSYMDVGPSTSYMHGYERDRREQNEYLYYEASKDVSDP
Homology
[Close]
BLAST of PI0013488 vs. ExPASy TrEMBL
Match: A0A5A7V456 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00210 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.5e-35
Identity = 79/104 (75.96%), Postives = 91/104 (87.50%), Query Frame = 0 

Query: 1   MVHLYVNVSRMSLDINLNSEPFGQFEARTQLIDPNSEPVASLINDDEEMVANNEYRNFRI 60
           MVHLYVNVSRM LDIN+NSEPFGQ E +TQ+I P++E VAS + DDEEMVANNEY +F+ 
Sbjct: 6   MVHLYVNVSRMGLDINMNSEPFGQLEDQTQVIVPDTEIVASSVYDDEEMVANNEYMDFQT 65

Query: 61  ETDDEFEEFDFDDREHELPSNTFTQLDMDVIDSIHEHDPIVASI 105
           ETDDEFEEFDFD REHELPSNT TQ++MDVIDSI EHDPIV+ +
Sbjct: 66  ETDDEFEEFDFDGREHELPSNTLTQINMDVIDSIREHDPIVSPV 109

[Close]
BLAST of PI0013488 vs. ExPASy TrEMBL
Match: A0A5D3DVS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00230 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 80/104 (76.92%), Postives = 88/104 (84.62%), Query Frame = 0 

Query: 1   MVHLYVNVSRMSLDINLNSEPFGQFEARTQLIDPNSEPVASLINDDEEMVANNEYRNFRI 60
           MVHLYVNVSR+ LDINLNSEPF Q E RTQ+I P+SE VAS + DDEEMVANNEY +F+ 
Sbjct: 6   MVHLYVNVSRVGLDINLNSEPFCQLEDRTQVIIPDSELVASSVYDDEEMVANNEYMDFQT 65

Query: 61  ETDDEFEEFDFDDREHELPSNTFTQLDMDVIDSIHEHDPIVASI 105
           E DDEFEEFDFD REHELP NT TQ+DMDVIDSI EHDPIVA +
Sbjct: 66  EIDDEFEEFDFDGREHELPLNTLTQIDMDVIDSIREHDPIVAPV 109

[Close]
BLAST of PI0013488 vs. ExPASy TrEMBL
Match: A0A5A7VAN3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00110 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 0 

Query: 1   MVHLYVNVSRMSLDINLNSEPFGQFEARTQLIDPNSEPVASLINDDEEMVANNEYRNFRI 60
           MVHLYVNVSR+ LDINLNSEPFGQ E R Q+I P++E VASL+ +DEEMVANNEY +FR 
Sbjct: 6   MVHLYVNVSRVGLDINLNSEPFGQLEDRAQVIVPDTELVASLVYNDEEMVANNEYMDFRT 65

Query: 61  ETDDEFEEFDFDDREHELPSNTFTQLDMDVIDSIHEHDPIVASI 105
           ET+D+FEEFDFD  EHELPSNT TQ+DMDVIDSI EHDPIV  +
Sbjct: 66  ETNDDFEEFDFDGLEHELPSNTLTQIDMDVIDSIREHDPIVVPV 109

[Close]
BLAST of PI0013488 vs. ExPASy TrEMBL
Match: A0A5D3C2N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001070 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 8.2e-34
Identity = 78/104 (75.00%), Postives = 87/104 (83.65%), Query Frame = 0 

Query: 1   MVHLYVNVSRMSLDINLNSEPFGQFEARTQLIDPNSEPVASLINDDEEMVANNEYRNFRI 60
           MVHLYVNVSR+ LDINLNSEPFGQ E RTQ+I P+SE V S + DDEE+V NNEY +FR 
Sbjct: 6   MVHLYVNVSRVGLDINLNSEPFGQLENRTQVIVPDSEIVVSSVYDDEEIVTNNEYMDFRT 65

Query: 61  ETDDEFEEFDFDDREHELPSNTFTQLDMDVIDSIHEHDPIVASI 105
           ETDDEFEEFDFD  EHELPSNT TQ+DMDVIDSI EH+PIV  +
Sbjct: 66  ETDDEFEEFDFDGCEHELPSNTLTQIDMDVIDSICEHNPIVVHV 109

[Close]
BLAST of PI0013488 vs. ExPASy TrEMBL
Match: A0A5D3DCI2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00020 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 8.2e-34
Identity = 79/104 (75.96%), Postives = 87/104 (83.65%), Query Frame = 0 

Query: 1   MVHLYVNVSRMSLDINLNSEPFGQFEARTQLIDPNSEPVASLINDDEEMVANNEYRNFRI 60
           MVHLY NVSR+ LDINLNSEPFGQ E RTQ+I  +SE VAS + DDEEMV NNEY +FR 
Sbjct: 1   MVHLYANVSRVGLDINLNSEPFGQLEDRTQVIVLDSELVASSVYDDEEMVVNNEYVDFRT 60

Query: 61  ETDDEFEEFDFDDREHELPSNTFTQLDMDVIDSIHEHDPIVASI 105
           +TDDEFEEFDFD  EHELPSNT TQ+DMDVIDSI EHDPIVA +
Sbjct: 61  KTDDEFEEFDFDGCEHELPSNTLTQIDMDVIDSIREHDPIVAPV 104

[Close]
BLAST of PI0013488 vs. NCBI nr
Match: KAA0060519.1 (uncharacterized protein E6C27_scaffold22G003730 [Cucumis melo var. makuwa] >TYK00759.1 uncharacterized protein E5676_scaffold420G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 3.1e-35
Identity = 79/104 (75.96%), Postives = 91/104 (87.50%), Query Frame = 0 

Query: 1   MVHLYVNVSRMSLDINLNSEPFGQFEARTQLIDPNSEPVASLINDDEEMVANNEYRNFRI 60
           MVHLYVNVSRM LDIN+NSEPFGQ E +TQ+I P++E VAS + DDEEMVANNEY +F+ 
Sbjct: 6   MVHLYVNVSRMGLDINMNSEPFGQLEDQTQVIVPDTEIVASSVYDDEEMVANNEYMDFQT 65

Query: 61  ETDDEFEEFDFDDREHELPSNTFTQLDMDVIDSIHEHDPIVASI 105
           ETDDEFEEFDFD REHELPSNT TQ++MDVIDSI EHDPIV+ +
Sbjct: 66  ETDDEFEEFDFDGREHELPSNTLTQINMDVIDSIREHDPIVSPV 109

[Close]
BLAST of PI0013488 vs. NCBI nr
Match: KAA0066696.1 (uncharacterized protein E6C27_scaffold271G00290 [Cucumis melo var. makuwa] >TYK27846.1 uncharacterized protein E5676_scaffold384G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-34
Identity = 80/104 (76.92%), Postives = 88/104 (84.62%), Query Frame = 0 

Query: 1   MVHLYVNVSRMSLDINLNSEPFGQFEARTQLIDPNSEPVASLINDDEEMVANNEYRNFRI 60
           MVHLYVNVSR+ LDINLNSEPF Q E RTQ+I P+SE VAS + DDEEMVANNEY +F+ 
Sbjct: 6   MVHLYVNVSRVGLDINLNSEPFCQLEDRTQVIIPDSELVASSVYDDEEMVANNEYMDFQT 65

Query: 61  ETDDEFEEFDFDDREHELPSNTFTQLDMDVIDSIHEHDPIVASI 105
           E DDEFEEFDFD REHELP NT TQ+DMDVIDSI EHDPIVA +
Sbjct: 66  EIDDEFEEFDFDGREHELPLNTLTQIDMDVIDSIREHDPIVAPV 109

[Close]
BLAST of PI0013488 vs. NCBI nr
Match: KAA0062731.1 (uncharacterized protein E6C27_scaffold382G00620 [Cucumis melo var. makuwa] >TYK22529.1 uncharacterized protein E5676_scaffold523G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 3.4e-34
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 0 

Query: 1   MVHLYVNVSRMSLDINLNSEPFGQFEARTQLIDPNSEPVASLINDDEEMVANNEYRNFRI 60
           MVHLYVNVSR+ LDINLNSEPFGQ E R Q+I P++E VASL+ +DEEMVANNEY +FR 
Sbjct: 6   MVHLYVNVSRVGLDINLNSEPFGQLEDRAQVIVPDTELVASLVYNDEEMVANNEYMDFRT 65

Query: 61  ETDDEFEEFDFDDREHELPSNTFTQLDMDVIDSIHEHDPIVASI 105
           ET+D+FEEFDFD  EHELPSNT TQ+DMDVIDSI EHDPIV  +
Sbjct: 66  ETNDDFEEFDFDGLEHELPSNTLTQIDMDVIDSIREHDPIVVPV 109

[Close]
BLAST of PI0013488 vs. NCBI nr
Match: KAA0040603.1 (uncharacterized protein E6C27_scaffold262G001800 [Cucumis melo var. makuwa] >TYK05645.1 uncharacterized protein E5676_scaffold98G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-33
Identity = 78/104 (75.00%), Postives = 87/104 (83.65%), Query Frame = 0 

Query: 1   MVHLYVNVSRMSLDINLNSEPFGQFEARTQLIDPNSEPVASLINDDEEMVANNEYRNFRI 60
           MVHLYVNVSR+ LDINLNSEPFGQ E RTQ+I P+SE V S + DDEE+V NNEY +FR 
Sbjct: 6   MVHLYVNVSRVGLDINLNSEPFGQLENRTQVIVPDSEIVVSSVYDDEEIVTNNEYMDFRT 65

Query: 61  ETDDEFEEFDFDDREHELPSNTFTQLDMDVIDSIHEHDPIVASI 105
           ETDDEFEEFDFD  EHELPSNT TQ+DMDVIDSI EH+PIV  +
Sbjct: 66  ETDDEFEEFDFDGCEHELPSNTLTQIDMDVIDSICEHNPIVVHV 109

[Close]
BLAST of PI0013488 vs. NCBI nr
Match: KAA0034939.1 (uncharacterized protein E6C27_scaffold434G00020 [Cucumis melo var. makuwa] >TYK21294.1 uncharacterized protein E5676_scaffold1199G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-33
Identity = 79/104 (75.96%), Postives = 87/104 (83.65%), Query Frame = 0 

Query: 1   MVHLYVNVSRMSLDINLNSEPFGQFEARTQLIDPNSEPVASLINDDEEMVANNEYRNFRI 60
           MVHLY NVSR+ LDINLNSEPFGQ E RTQ+I  +SE VAS + DDEEMV NNEY +FR 
Sbjct: 1   MVHLYANVSRVGLDINLNSEPFGQLEDRTQVIVLDSELVASSVYDDEEMVVNNEYVDFRT 60

Query: 61  ETDDEFEEFDFDDREHELPSNTFTQLDMDVIDSIHEHDPIVASI 105
           +TDDEFEEFDFD  EHELPSNT TQ+DMDVIDSI EHDPIVA +
Sbjct: 61  KTDDEFEEFDFDGCEHELPSNTLTQIDMDVIDSIREHDPIVAPV 104

The following BLAST results are available for this feature:
BLAST of PI0013488 vs.
Match NameE-valueIdentityDescription
BLAST of PI0013488 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V4561.5e-3575.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DVS61.3e-3476.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VAN31.7e-3475.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C2N38.2e-3475.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DCI28.2e-3475.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of PI0013488 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060519.13.1e-3575.96uncharacterized protein E6C27_scaffold22G003730 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0066696.12.6e-3476.92uncharacterized protein E6C27_scaffold271G00290 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0062731.13.4e-3475.00uncharacterized protein E6C27_scaffold382G00620 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0040603.11.7e-3375.00uncharacterized protein E6C27_scaffold262G001800 [Cucumis melo var. makuwa] >TYK... [more]
KAA0034939.11.7e-3375.96uncharacterized protein E6C27_scaffold434G00020 [Cucumis melo var. makuwa] >TYK2... [more]
BLAST of PI0013488 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0013488.1PI0013488.1mRNA