PI0013334 (gene) Melon (PI 482460) v1

Overview


Name	PI0013334
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Location	chr01: 26123012 .. 26125262 (-)
RNA-Seq Expression	PI0013334
Synteny	PI0013334

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCACAGAGAGAAGAAAAACGATGAATGTCCCTGATCGCTACGAGCGCTTCGTCGTTCCGGAGGGCGCCAAGAAGTTAATTATTGAAACCCTAATTTTTTTCATCATCTCTTTCACTTCACGATCGATTTTGCTTTTTTTCTACTTACACTACAACGACCGTCTCTGTTATGATTTTCTTTTCTGGACGGATGTCGATTTTGTTGAACATTGTAGGGTTTCATACGAGAGAGACACGAAGATCATGAATGCGGCCACATTTATATTAGAGAGAGAGGATCATACTATCGGAAACATTCTCCGCATGTAGGGGTTTTCTGTTAATCGGAGATGGTTTCTGGCTATTTGAATTAATAGTTTCGTTTTTGTTTATTAACATGTATTGTTCTTTTTCAATGGCCTGAATAACTAGGCAACTTCATAGAGATGATAATGTGCTGTTTGCTGGCTACCAGCTTCCTCATCCTCTTAAATACAGAATACTTGTTCGGGTTAGTAGTTTGATTGTTTTTCCATTGCTTAATTTTTGCTCTATTGCATGAATGGTTAAATGAATAGTATTATGAGCATTTTTCCAGCTTTTGCTGTTTGGTAATGACTGATCGAAGTGTATTGCTTAATCAGTGTTATTGTTTGTTCACATGGTAATCGTTTATTTGAGATTGACTGATCGAATGAAAATTTTATCGACTGTCAGAGCAGAACAAAAACTTTTACAGGAAATTTCGAATTATACATTTTAAGTACTTTTTATGATGAAAGGTTTGAAATCTCAACGTTCTTTTGTATAATTGTCTTAGTCTTAGATAAATTAGGTGTCTCTCCTCTATTTTTCATTCGGTTCTTCGACTGGAATTCATAGAATCAATTTGCCTTATAGGAAGTGAAAACGTACTTGAATGCTTAAGCTCCTTATCCATTTATATTAACGTTTTCCTTTTCCCCCAGAAAGGTCACGAACTCCTGGGAGAAAACCCCGATTATAAATTTTTTGAGGATGGCAAAGATATTTTGCGGATACTGATTGGTTTTGAAAACTAAGATTCTATGTAGCTTTATTATGGTCCGTTGTTGATTAACTTACAATTAGCCATTAAGTTCTGATGATGTTCTTTTATCGTAATTATTTTACTTTTTAGATGTAATTTTTCTGCAGATACAAACTGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGATAAGGAGCTCGACGTTTTGAAATACGAGCTTGAGGTAATGCTTTCACTCCCACTTGACTTTTTTTCTCTCTCTCTCTGCAATTGGAGTGGTGTGAGTACGATTTGTTCTTATCCATTATGAGGGATTCCAGTGATCCTCTGATTATTTTGCTCTTAAGGTTTACACCTATTTTCTTTTGTTTTTGCTCTTATATTATTAAATGATTGATTTTTTAGTACTAATATGGAAATTTGAATATCCAACTTTCAATACATATGACTATGCTCACTTTGGCTTTCAATGGTTGGTTTGAATCCTTGGTCTTCACATAAAAACTTTTGTGATCTTGTTAAATGTTCATATTAAATTTAAACTCCAACACGGATGGGATATAGTTTATAGTACAAGTTCATTTCAAATTATTTGAAGTTTTTGTAAATGCCCATTAAGAATTTAGCCCCCAACTTCAACTGTGTCCATGTTAGGGGTCAAATTTAATAGTTGGTACTTCCAACTATTATAAGATAATAGATATATAGATAACTACAATATTATTATTTCAAGTCTATATTTAAATTTTTTTTAATTGTTTGTGTTTATTATTTTCTACCATCTCCTCTAAATTAGTGTCAAACTCAAAAACAAACTGTTATAGTTGATACTAAAATATTCTACATTGCAAACATAAACTATTATAACTTACCTGTAACTTTTATAGGCTTTAATATCTAACTCAATACTCCAAACATCCCTTATTAGTTCTTTTTCTCCAAAGTTTGGACAAAAAGTTAATCTAAATTATCATTGATTTATTATTTACATTTGTGATGTGCTTCATGCAGGGTGAGATTTCAAGGTTCTCTAGGGCCTATTAGTTTGCCTTCCAAGAAAACCAAGGGAAAGTTTGAATTCAATAACGTCGAGTTGGGAATGGAATGCCAATAATAAAATTTAAGGCCACTTTTTAGGCTGGTTCCTTTTGGCGGTGGGAGTTGGTTGTATTCTTTCTTTCTTTCTTTTAAAATGGATGTTCAAAATTTCATCCAAAAAAG

mRNA sequence

GTTTCACAGAGAGAAGAAAAACGATGAATGTCCCTGATCGCTACGAGCGCTTCGTCGTTCCGGAGGGCGCCAAGAAGTTAATTATTGAAACCCTAATTTTTTTCATCATCTCTTTCACTTCACGATCGATTTTGCTTTTTTTCTACTTACACTACAACGACCGTCTCTGTTATGATTTTCTTTTCTGGACGGATGTCGATTTTGTTGAACATTGTAGGGTTTCATACGAGAGAGACACGAAGATCATGAATGCGGCCACATTTATATTAGAGAGAGAGGATCATACTATCGGAAACATTCTCCGCATGCAACTTCATAGAGATGATAATGTGCTGTTTGCTGGCTACCAGCTTCCTCATCCTCTTAAATACAGAATACTTGTTCGGATACAAACTGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGATAAGGAGCTCGACGTTTTGAAATACGAGCTTGAGGGTGAGATTTCAAGGTTCTCTAGGGCCTATTAGTTTGCCTTCCAAGAAAACCAAGGGAAAGTTTGAATTCAATAACGTCGAGTTGGGAATGGAATGCCAATAATAAAATTTAAGGCCACTTTTTAGGCTGGTTCCTTTTGGCGGTGGGAGTTGGTTGTATTCTTTCTTTCTTTCTTTTAAAATGGATGTTCAAAATTTCATCCAAAAAAG

Coding sequence (CDS)

ATGAATGTCCCTGATCGCTACGAGCGCTTCGTCGTTCCGGAGGGCGCCAAGAAGTTAATTATTGAAACCCTAATTTTTTTCATCATCTCTTTCACTTCACGATCGATTTTGCTTTTTTTCTACTTACACTACAACGACCGTCTCTGTTATGATTTTCTTTTCTGGACGGATGTCGATTTTGTTGAACATTGTAGGGTTTCATACGAGAGAGACACGAAGATCATGAATGCGGCCACATTTATATTAGAGAGAGAGGATCATACTATCGGAAACATTCTCCGCATGCAACTTCATAGAGATGATAATGTGCTGTTTGCTGGCTACCAGCTTCCTCATCCTCTTAAATACAGAATACTTGTTCGGATACAAACTGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGATAAGGAGCTCGACGTTTTGAAATACGAGCTTGAGGGTGAGATTTCAAGGTTCTCTAGGGCCTATTAG

Protein sequence

MNVPDRYERFVVPEGAKKLIIETLIFFIISFTSRSILLFFYLHYNDRLCYDFLFWTDVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY

Homology

[Close]

BLAST of PI0013334 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.5e-43
Identity = 91/163 (55.83%), Postives = 105/163 (64.42%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLIIETLIFFIISFTSRSILLFFYLHYNDRLCYDFLFWTDVDF 60
           MN P+RYERFVVPEG KK                                          
Sbjct: 1   MNAPERYERFVVPEGTKK------------------------------------------ 60

Query: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120
                VSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAGYQLPHPLKY+I+V
Sbjct: 61  -----VSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIV 116

Query: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 164
           RI T SQSSPMQAYNQAINDLDKELD LK + E E+++FS  +
Sbjct: 121 RIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of PI0013334 vs. ExPASy Swiss-Prot
Match: Q60SM4 (Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis briggsae OX=6238 GN=rpb-11 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-20
Identity = 43/98 (43.88%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 65  RVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQT 124
           ++  E+DTK+ NAA F + +EDHT+GN+L++QL +D  VLFAGY+ PHPL+++IL+R+QT
Sbjct: 17  KIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQT 76

Query: 125 ASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRA 163
            + ++P  A   AI DL  EL +L++ ++  I + +++
Sbjct: 77  TNATTPADALTTAITDLVGELSLLEHRIDSAIKKCTQS 114

[Close]

BLAST of PI0013334 vs. ExPASy Swiss-Prot
Match: O08740 (DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-20
Identity = 42/92 (45.65%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 65  RVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQT 124
           +++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAGY++PHPL+++I++R+QT
Sbjct: 18  KITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 77

Query: 125 ASQSSPMQAYNQAINDLDKELDVLKYELEGEI 157
               SP +A+  AI DL  EL +L+    G I
Sbjct: 78  TPDYSPQEAFTNAITDLISELSLLEERFRGAI 109

[Close]

BLAST of PI0013334 vs. ExPASy Swiss-Prot
Match: Q9XVH6 (Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis elegans OX=6239 GN=rpb-11 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.3e-20
Identity = 44/94 (46.81%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 69  ERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQS 128
           E+DTK+ NAA F + +EDHT+GN+L++QL +D  VLFAGY+ PHPL+++IL+RIQT + +
Sbjct: 21  EKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNT 80

Query: 129 SPMQAYNQAINDLDKELDVLKYELEGEISRFSRA 163
           +P  A   AI DL  EL +L++ ++  I + +++
Sbjct: 81  TPADALTTAITDLVGELSLLEHRIDAAIKKCTQS 114

[Close]

BLAST of PI0013334 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-19
Identity = 40/85 (47.06%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 65  RVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQT 124
           +++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAGY++PHPL+++I++R+QT
Sbjct: 18  KITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 77

Query: 125 ASQSSPMQAYNQAINDLDKELDVLK 150
               SP +A+  AI DL  EL +L+
Sbjct: 78  TPDYSPQEAFTNAITDLISELSLLE 102

[Close]

BLAST of PI0013334 vs. ExPASy TrEMBL
Match: A0A0A0K9R2 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G426580 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 7.8e-83
Identity = 158/163 (96.93%), Postives = 160/163 (98.16%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLIIETLIFFIISFTSRSILLFFYLHYNDRLCYDFLFWTDVDF 60
           MNVPDRYERFVVPEGAKKLI+ETLI FIIS TSRSILLFFY+HYN RLCYDFLFWTDVDF
Sbjct: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYN-RLCYDFLFWTDVDF 60

Query: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120
           VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV
Sbjct: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120

Query: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 164
           RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY
Sbjct: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 162

[Close]

BLAST of PI0013334 vs. ExPASy TrEMBL
Match: A0A1S3CFN3 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo OX=3656 GN=LOC103499938 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.1e-51
Identity = 115/163 (70.55%), Postives = 115/163 (70.55%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLIIETLIFFIISFTSRSILLFFYLHYNDRLCYDFLFWTDVDF 60
           MNVPDRYERFVVPEGAKK                                          
Sbjct: 1   MNVPDRYERFVVPEGAKK------------------------------------------ 60

Query: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120
                VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV
Sbjct: 61  -----VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 116

Query: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 164
           RIQTASQSSPMQAYNQAINDLDKELDVLKYELE EISRFSRAY
Sbjct: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY 116

[Close]

BLAST of PI0013334 vs. ExPASy TrEMBL
Match: A0A6J1KX24 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497917 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.5e-49
Identity = 110/163 (67.48%), Postives = 113/163 (69.33%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLIIETLIFFIISFTSRSILLFFYLHYNDRLCYDFLFWTDVDF 60
           MNVPDRYERFVVPEGAKK                                          
Sbjct: 1   MNVPDRYERFVVPEGAKK------------------------------------------ 60

Query: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120
                VSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILV
Sbjct: 61  -----VSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILV 116

Query: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 164
           RIQTASQSSPMQAYNQAINDLDKELDVLKYELEG  SRFSR+Y
Sbjct: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRSY 116

[Close]

BLAST of PI0013334 vs. ExPASy TrEMBL
Match: A0A6J1H8G6 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461018 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 3.3e-49
Identity = 110/163 (67.48%), Postives = 112/163 (68.71%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLIIETLIFFIISFTSRSILLFFYLHYNDRLCYDFLFWTDVDF 60
           MNVPDRYERFVVPEGAKK                                          
Sbjct: 1   MNVPDRYERFVVPEGAKK------------------------------------------ 60

Query: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120
                VSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILV
Sbjct: 61  -----VSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILV 116

Query: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 164
           RIQTASQSSPMQAYNQAINDLDKELDVLKYELEG  SRFSR Y
Sbjct: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY 116

[Close]

BLAST of PI0013334 vs. ExPASy TrEMBL
Match: A0A6J1DA06 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Momordica charantia OX=3673 GN=LOC111019017 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.8e-48
Identity = 107/163 (65.64%), Postives = 112/163 (68.71%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLIIETLIFFIISFTSRSILLFFYLHYNDRLCYDFLFWTDVDF 60
           MNVPDRYERFVVPEGAKK                                          
Sbjct: 1   MNVPDRYERFVVPEGAKK------------------------------------------ 60

Query: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120
                VSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+
Sbjct: 61  -----VSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILI 116

Query: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 164
           RI TASQSSPMQAYNQA+NDLDKELD LK+ELE E+SRFSRAY
Sbjct: 121 RIHTASQSSPMQAYNQAVNDLDKELDHLKFELESELSRFSRAY 116

[Close]

BLAST of PI0013334 vs. NCBI nr
Match: XP_031744367.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 1.6e-82
Identity = 158/163 (96.93%), Postives = 160/163 (98.16%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLIIETLIFFIISFTSRSILLFFYLHYNDRLCYDFLFWTDVDF 60
           MNVPDRYERFVVPEGAKKLI+ETLI FIIS TSRSILLFFY+HYN RLCYDFLFWTDVDF
Sbjct: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYN-RLCYDFLFWTDVDF 60

Query: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120
           VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV
Sbjct: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120

Query: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 164
           RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY
Sbjct: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 162

[Close]

BLAST of PI0013334 vs. NCBI nr
Match: XP_031744368.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X2 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-58
Identity = 116/122 (95.08%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLIIETLIFFIISFTSRSILLFFYLHYNDRLCYDFLFWTDVDF 60
           MNVPDRYERFVVPEGAKKLI+ETLI FIIS TSRSILLFFY+HYN RLCYDFLFWTDVDF
Sbjct: 1   MNVPDRYERFVVPEGAKKLILETLILFIISLTSRSILLFFYIHYN-RLCYDFLFWTDVDF 60

Query: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120
           VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV
Sbjct: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120

Query: 121 RI 123
           R+
Sbjct: 121 RM 121

[Close]

BLAST of PI0013334 vs. NCBI nr
Match: XP_004135939.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus] >KAE8646398.1 hypothetical protein Csa_016830 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 8.6e-52
Identity = 116/163 (71.17%), Postives = 116/163 (71.17%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLIIETLIFFIISFTSRSILLFFYLHYNDRLCYDFLFWTDVDF 60
           MNVPDRYERFVVPEGAKK                                          
Sbjct: 1   MNVPDRYERFVVPEGAKK------------------------------------------ 60

Query: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120
                VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV
Sbjct: 61  -----VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 116

Query: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 164
           RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY
Sbjct: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116

[Close]

BLAST of PI0013334 vs. NCBI nr
Match: XP_008461312.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo])

HSP 1 Score: 211.8 bits (538), Expect = 4.3e-51
Identity = 115/163 (70.55%), Postives = 115/163 (70.55%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLIIETLIFFIISFTSRSILLFFYLHYNDRLCYDFLFWTDVDF 60
           MNVPDRYERFVVPEGAKK                                          
Sbjct: 1   MNVPDRYERFVVPEGAKK------------------------------------------ 60

Query: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120
                VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV
Sbjct: 61  -----VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 116

Query: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 164
           RIQTASQSSPMQAYNQAINDLDKELDVLKYELE EISRFSRAY
Sbjct: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY 116

[Close]

BLAST of PI0013334 vs. NCBI nr
Match: XP_038899336.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like [Benincasa hispida])

HSP 1 Score: 209.9 bits (533), Expect = 1.6e-50
Identity = 114/163 (69.94%), Postives = 115/163 (70.55%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLIIETLIFFIISFTSRSILLFFYLHYNDRLCYDFLFWTDVDF 60
           MNVPDRYERFVVPEGAKK                                          
Sbjct: 1   MNVPDRYERFVVPEGAKK------------------------------------------ 60

Query: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120
                VSYERDTKIMNAATFILEREDHTIG+ILRMQLHRDDNVLFAGYQLPHPLKYRILV
Sbjct: 61  -----VSYERDTKIMNAATFILEREDHTIGHILRMQLHRDDNVLFAGYQLPHPLKYRILV 116

Query: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 164
           RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSR Y
Sbjct: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRNY 116

[Close]

BLAST of PI0013334 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 175.6 bits (444), Expect = 3.2e-44
Identity = 91/163 (55.83%), Postives = 105/163 (64.42%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLIIETLIFFIISFTSRSILLFFYLHYNDRLCYDFLFWTDVDF 60
           MN P+RYERFVVPEG KK                                          
Sbjct: 1   MNAPERYERFVVPEGTKK------------------------------------------ 60

Query: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120
                VSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAGYQLPHPLKY+I+V
Sbjct: 61  -----VSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIV 116

Query: 121 RIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 164
           RI T SQSSPMQAYNQAINDLDKELD LK + E E+++FS  +
Sbjct: 121 RIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of PI0013334 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 159.8 bits (403), Expect = 1.8e-39
Identity = 91/193 (47.15%), Postives = 105/193 (54.40%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGAKKLIIETLIFFIISFTSRSILLFFYLHYNDRLCYDFLFWTDVDF 60
           MN P+RYERFVVPEG KK                                          
Sbjct: 1   MNAPERYERFVVPEGTKK------------------------------------------ 60

Query: 61  VEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILV 120
                VSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAGYQLPHPLKY+I+V
Sbjct: 61  -----VSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIV 120

Query: 121 R------------------------------IQTASQSSPMQAYNQAINDLDKELDVLKY 164
           R                              I T SQSSPMQAYNQAINDLDKELD LK 
Sbjct: 121 RDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQAINDLDKELDYLKN 146

The following BLAST results are available for this feature:

BLAST of PI0013334 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38859	4.5e-43	55.83	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=...	[more]
Q60SM4	2.4e-20	43.88	Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis briggsae...	[more]
O08740	2.4e-20	45.65	DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j ...	[more]
Q9XVH6	5.3e-20	46.81	Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis elegans ...	[more]
Q32P79	1.5e-19	47.06	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=...	[more]

BLAST of PI0013334 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9R2	7.8e-83	96.93	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G426580...	[more]
A0A1S3CFN3	2.1e-51	70.55	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo OX=365...	[more]
A0A6J1KX24	2.5e-49	67.48	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbit...	[more]
A0A6J1H8G6	3.3e-49	67.48	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbit...	[more]
A0A6J1DA06	2.8e-48	65.64	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Momordica charantia...	[more]

BLAST of PI0013334 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744367.1	1.6e-82	96.93	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus...	[more]
XP_031744368.1	1.6e-58	95.08	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X2 [Cucumis sativus...	[more]
XP_004135939.1	8.6e-52	71.17	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus...	[more]
XP_008461312.1	4.3e-51	70.55	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis me...	[more]
XP_038899336.1	1.6e-50	69.94	DNA-directed RNA polymerases II, IV and V subunit 11-like [Benincasa hispida]	[more]

BLAST of PI0013334 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52090.1	3.2e-44	55.83	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	1.8e-39	47.15	DNA-directed RNA polymerase, RBP11-like	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 131..151
None	No IPR available	PANTHER	PTHR13946:SF16	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11	coord: 1..157
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..157
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 1..161 e-value: 3.6E-46 score: 157.6
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 65..159
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 78..149 e-value: 1.9E-24 score: 85.2
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 82..113
IPR037685	RNA polymerase RBP11	CDD	cd06926	RNAP_II_RPB11	coord: 65..149 e-value: 8.90556E-44 score: 138.109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013334.1	PI0013334.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity