PI0013328 (gene) Melon (PI 482460) v1

Overview


Name	PI0013328
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr01: 4027985 .. 4028393 (+)
RNA-Seq Expression	PI0013328
Synteny	PI0013328

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCTAAGAAAACTTGTCTCTGTTATTGTACGAAAGACAAAGTGGAAATCCAAGTAACTGAAAGCAGCAAAAGCGCTACTTTTGCAAGCCCACGAAAGCGCGCTCTTTTTCTCTCTCACCCCCCGGAAAGAAATTCCTAAAGTAAAATTGCCTCCCCATGGGAATTGATTTCAAATCAATCTCAAGGAAAACCCTTCTCACAGCAAGTCAGCAGATAGATCAATGCTCAAATGTGCTGTAAGGTTACAGAAAGCAGATCAAAACATTAAGATTACTCAATTAATGTTGTCCAAATCACTTAATACCTTGAGAGAGACTAAAGTTGAGAGAACGCCGGATCATGCAATCTTTATTCAAGAGAAGATCCTTTTATTAGAAATACTGAGTGACATCCTCTCTGGTTGA

mRNA sequence

ATGCCACCTAAGAAAACTTGTCTCTGTTATTGTACGAAAGACAAAGTGGAAATCCAAGTAACTGAAAGCAGCAAAAGCGCTACTTTTGCAAGCCCACGAAAGCGCGAAAACCCTTCTCACAGCAAGTCAGCAGATAGATCAATGCTCAAATGTGCTGTAAGGTTACAGAAAGCAGATCAAAACATTAAGATTACTCAATTAATGTTGTCCAAATCACTTAATACCTTGAGAGAGACTAAAGTTGAGAGAACGCCGGATCATGCAATCTTTATTCAAGAGAAGATCCTTTTATTAGAAATACTGAGTGACATCCTCTCTGGTTGA

Coding sequence (CDS)

ATGCCACCTAAGAAAACTTGTCTCTGTTATTGTACGAAAGACAAAGTGGAAATCCAAGTAACTGAAAGCAGCAAAAGCGCTACTTTTGCAAGCCCACGAAAGCGCGAAAACCCTTCTCACAGCAAGTCAGCAGATAGATCAATGCTCAAATGTGCTGTAAGGTTACAGAAAGCAGATCAAAACATTAAGATTACTCAATTAATGTTGTCCAAATCACTTAATACCTTGAGAGAGACTAAAGTTGAGAGAACGCCGGATCATGCAATCTTTATTCAAGAGAAGATCCTTTTATTAGAAATACTGAGTGACATCCTCTCTGGTTGA

Protein sequence

MPPKKTCLCYCTKDKVEIQVTESSKSATFASPRKRENPSHSKSADRSMLKCAVRLQKADQNIKITQLMLSKSLNTLRETKVERTPDHAIFIQEKILLLEILSDILSG

Homology

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BLAST of PI0013328 vs. ExPASy TrEMBL
Match: A0A0A0K546 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031680 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.0e-43
Identity = 104/136 (76.47%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 1   MPPKKTCLCYCTKDKVEIQVTESSKSATFASPRKR------------------------- 60
           MPPKKTCLCYCTKDKVEIQVTESSKSATFASPRKR                         
Sbjct: 1   MPPKKTCLCYCTKDKVEIQVTESSKSATFASPRKRALFLSLTPRKEITKVKLTPHGNCFQ 60

Query: 61  ----ENPSHSKSADRSMLKCAVRLQKADQNIKITQLMLSKSLNTLRETKVERTPDHAIFI 108
               ENP HSKSADRSMLKCAVRLQKADQNIKITQL+LSKSLNTLRETKVERTPDHAIFI
Sbjct: 61  INLKENPFHSKSADRSMLKCAVRLQKADQNIKITQLVLSKSLNTLRETKVERTPDHAIFI 120

The following BLAST results are available for this feature:

BLAST of PI0013328 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K546	4.0e-43	76.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031680 PE=4 SV=1	[more]

BLAST of PI0013328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of PI0013328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013328.1	PI0013328.1	mRNA