PI0013321 (gene) Melon (PI 482460) v1

Overview


Name	PI0013321
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr04: 31702127 .. 31702561 (+)
RNA-Seq Expression	PI0013321
Synteny	PI0013321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCTAGAAACAAGATGAGACTAATTCAAAGGCACATAGGAACGGTTGCGTCCGGACTCTAGCTTTTTCCAGTTTTCTTCTCCCCGCAGATTGAAGCCAACCAAACGGATCTGAGAAATAGCTTCCGAAACGACATTTCCTGACCATAAGAAAAGTGATCGAACTGAGAAGCCATGAAAACACAAGAATCGAGTGTTGAAGTAAAATCAGAGCAGGAAATTATATCAAGGATGCATAGTAAGTATGAATATAAGTTGAGAAGCACGAAGATGGAGGTCGATGAAGATTGAAGAAGAAGAAAAATCAGAGAAAGAAATCCAAGAGAAAGAATGGATCAAAACCTGAAGAGGAGAATGGATTGTATGTGATGCCTCACGCGAGGAGACCAAAAACGATTGTACCAGGCTACGAAGAGGCAGAGCAATTTGATGTTTGA

mRNA sequence

CGCTAGAAACAAGATGAGACTAATTCAAAGGCACATAGGAACGGTTGCGTCCGGACTCTAGCTTTTTCCAGTTTTCTTCTCCCCGCAGATTGAAGCCAACCAAACGGATCTGAGAAATAGCTTCCGAAACGACATTTCCTGACCATAAGAAAAGTGATCGAACTGAGAAGCCATGAAAACACAAGAATCGAGTGTTGAAGTAAAATCAGAGCAGGAAATTATATCAAGGATGCATAGTAAATTGAAGAAGAAGAAAAATCAGAGAAAGAAATCCAAGAGAAAGAATGGATCAAAACCTGAAGAGGAGAATGGATTGTATGTGATGCCTCACGCGAGGAGACCAAAAACGATTGTACCAGGCTACGAAGAGGCAGAGCAATTTGATGTTTGA

Coding sequence (CDS)

ATGAAAACACAAGAATCGAGTGTTGAAGTAAAATCAGAGCAGGAAATTATATCAAGGATGCATAGTAAATTGAAGAAGAAGAAAAATCAGAGAAAGAAATCCAAGAGAAAGAATGGATCAAAACCTGAAGAGGAGAATGGATTGTATGTGATGCCTCACGCGAGGAGACCAAAAACGATTGTACCAGGCTACGAAGAGGCAGAGCAATTTGATGTTTGA

Protein sequence

MKTQESSVEVKSEQEIISRMHSKLKKKKNQRKKSKRKNGSKPEEENGLYVMPHARRPKTIVPGYEEAEQFDV

Homology

[Close]

BLAST of PI0013321 vs. ExPASy TrEMBL
Match: A0A0A0LE35 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893300 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.4e-22
Identity = 63/73 (86.30%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MKTQESSVEVKSEQEIISRMHSKLK-KKKNQRKKSKRKNGSKPEEENGLYVMPHARRPKT 60
          MKT ESS EVKSEQEIIS+M SKLK  KK+QRK S RKNGSKPEEENGLYVMPHARRPKT
Sbjct: 16 MKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEEENGLYVMPHARRPKT 75

Query: 61 IVPGYEEAEQFDV 73
          +VPGYEEAEQFDV
Sbjct: 76 VVPGYEEAEQFDV 88

[Close]

BLAST of PI0013321 vs. NCBI nr
Match: KGN60280.1 (hypothetical protein Csa_001917 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 9.2e-22
Identity = 63/73 (86.30%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MKTQESSVEVKSEQEIISRMHSKLK-KKKNQRKKSKRKNGSKPEEENGLYVMPHARRPKT 60
          MKT ESS EVKSEQEIIS+M SKLK  KK+QRK S RKNGSKPEEENGLYVMPHARRPKT
Sbjct: 16 MKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEEENGLYVMPHARRPKT 75

Query: 61 IVPGYEEAEQFDV 73
          +VPGYEEAEQFDV
Sbjct: 76 VVPGYEEAEQFDV 88

The following BLAST results are available for this feature:

BLAST of PI0013321 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE35	4.4e-22	86.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893300 PE=4 SV=1	[more]

BLAST of PI0013321 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60280.1	9.2e-22	86.30	hypothetical protein Csa_001917 [Cucumis sativus]	[more]

BLAST of PI0013321 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 17..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013321.1	PI0013321.1	mRNA