PI0013168 (gene) Melon (PI 482460) v1

Overview


Name	PI0013168
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	RING-type domain-containing protein
Location	chr04: 5790128 .. 5790616 (+)
RNA-Seq Expression	PI0013168
Synteny	PI0013168

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCCTCCTCGGACTCCGACGGCGGCGATATCGGTAGTTTCCCCTACATCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCACTACCTATTTATGTACCAGAACCACCGTTCCGGCGCCGAATCGCCGTCTCCGGCAGGGGGGACGGCGGGATTTCGTCGTGGATTTTGTACAGGGGCTAGAAGATGAGGTTATTAATGGATATCCGAAGATTCTGTACTCGGAGGCGAAATTGGAAAGGAAATTGGAGTCCGCCGCCGCGAATGGTTGTTCGATTTGTTTGGGGGATTATAAAGACGACGACGTTTTGCGGTTGTTGCCAGATTGTGGCCATCTGTTTCACGGTGGTTGTATTGATCCCTGGTTGCGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCAGTGCCGACGCCGATCTCCACCCCTTTGGCGGAGGTGGTTCCGTTGGCCATCGGAAGGAGTTGA

mRNA sequence

ATGAACTCCTCCTCGGACTCCGACGGCGGCGATATCGGTAGTTTCCCCTACATCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCACTACCTATTTATGTACCAGAACCACCGTTCCGGCGCCGAATCGCCGTCTCCGGCAGGGGGGACGGCGGGATTTCGTCGTGGATTTTGTACAGGGGCTAGAAGATGAGGTTATTAATGGATATCCGAAGATTCTGTACTCGGAGGCGAAATTGGAAAGGAAATTGGAGTCCGCCGCCGCGAATGGTTGTTCGATTTGTTTGGGGGATTATAAAGACGACGACGTTTTGCGGTTGTTGCCAGATTGTGGCCATCTGTTTCACGGTGGTTGTATTGATCCCTGGTTGCGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCAGTGCCGACGCCGATCTCCACCCCTTTGGCGGAGGTGGTTCCGTTGGCCATCGGAAGGAGTTGA

Coding sequence (CDS)

ATGAACTCCTCCTCGGACTCCGACGGCGGCGATATCGGTAGTTTCCCCTACATCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCACTACCTATTTATGTACCAGAACCACCGTTCCGGCGCCGAATCGCCGTCTCCGGCAGGGGGGACGGCGGGATTTCGTCGTGGATTTTGTACAGGGGCTAGAAGATGAGGTTATTAATGGATATCCGAAGATTCTGTACTCGGAGGCGAAATTGGAAAGGAAATTGGAGTCCGCCGCCGCGAATGGTTGTTCGATTTGTTTGGGGGATTATAAAGACGACGACGTTTTGCGGTTGTTGCCAGATTGTGGCCATCTGTTTCACGGTGGTTGTATTGATCCCTGGTTGCGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCAGTGCCGACGCCGATCTCCACCCCTTTGGCGGAGGTGGTTCCGTTGGCCATCGGAAGGAGTTGA

Protein sequence

MNSSSDSDGGDIGSFPYIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGRRDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVLRLLPDCGHLFHGGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS

Homology

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BLAST of PI0013168 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.9e-43
Identity = 85/154 (55.19%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 11  DIGSFPYIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGRR------DFVVDFV 70
           DIG F Y +G+S+G+L L+TT+T+T+Y CTR  + +   +  Q   R        ++D V
Sbjct: 60  DIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIIDVV 119

Query: 71  QGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVLRLLPDCGHLFHGGC 130
            GL+++ I  YPKILYSEAK         A+ C+ICLGDYK   +LR LPDC HLFH  C
Sbjct: 120 PGLDEDTIQSYPKILYSEAK-----GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKC 179

Query: 131 IDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLA 159
           ID WLRLNP+CPVCRTSP+PTP+STPLAEVVPLA
Sbjct: 180 IDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLA 208

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BLAST of PI0013168 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.3e-39
Identity = 82/171 (47.95%), Postives = 109/171 (63.74%), Query Frame = 0


Query: 12  IGSFPYIVGISVGILFLLTTLTITTYLCTR-------TTVPAPNRRLRQGG--------- 71
           +G   Y +G+S+GIL L+TT+T+T+Y CTR       TT P   RR R+           
Sbjct: 20  MGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQER 79

Query: 72  ------RRDFVVDFVQGLEDEVINGYPKILYSEAKLERKL--ESAAANGCSICLGDYKDD 131
                   D VV  V GL +EVI G+PK+ Y EA++   L  ES+  + CSICL DYK  
Sbjct: 80  FDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKM 139

Query: 132 DVLRLLPDCGHLFHGGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLA 159
           D++R+LPDC HLFH  C+DPWLRL+P+CPVCRTSP+P+P  TP+A+VVP +
Sbjct: 140 DMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of PI0013168 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.8e-26
Identity = 66/169 (39.05%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 15  FPYIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGRRDFVV------------- 74
           F Y + I++G L LL+T+ +++Y+C R +          G R   V+             
Sbjct: 35  FGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDNE 94

Query: 75  -----DFVQGLEDEVINGYPKILYSEAKLERKLESAAANG---CSICLGDYKDDDVLRLL 134
                D V GL+  VIN YPK  +S+       +     G   CSICL +YK+ ++LR++
Sbjct: 95  DLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMM 154

Query: 135 PDCGHLFHGGCIDPWLRLNPSCPVCRTSPVP----TPISTPLAEVVPLA 159
           P+C H FH  C+D WL+LN SCPVCR SP+P    TP+STPL+EVVPL+
Sbjct: 155 PECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of PI0013168 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.4e-22
Identity = 66/180 (36.67%), Postives = 95/180 (52.78%), Query Frame = 0


Query: 17  YIVGISVGILFLLTTLTITTYLCTRT-----TVPAPNRRLRQG--------GRRDFVVD- 76
           Y + I++G L L++T+ +++Y+C R      +  A N               R  FV + 
Sbjct: 28  YSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFVAED 87

Query: 77  --------FVQGLEDEVINGYPKILYSEAKLERKLESAAANG------------CSICLG 136
                    V GL+  VIN YPK  ++      K  +A  NG            CSICL 
Sbjct: 88  DDLESGNVVVGGLDHSVINSYPKFHFT------KDITAVVNGDGFHDGEGRETTCSICLC 147

Query: 137 DYKDDDVLRLLPDCGHLFHGGCIDPWLRLNPSCPVCRTSPVP----TPISTPLAEVVPLA 159
           +Y ++++LR++P+C H FH  C+D WL+LN SCPVCR SP+P    TP STPL+EVVPL+
Sbjct: 148 EYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

[Close]

BLAST of PI0013168 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.6e-22
Identity = 54/149 (36.24%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 17  YIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGRRDFVVDFVQ-------GLED 76
           Y + I+V IL L++ + + +Y+C R+         R     D V+D          GL+ 
Sbjct: 15  YGIAIAVSILVLISFIMLASYICIRSKSTG-----RDEATSDVVLDLPSPAAEVKLGLDR 74

Query: 77  EVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVLRLLPDCGHLFHGGCIDPWL 136
            VI  YP+I+  ++   R+L       CSICL DY+  + +R +P+C H FH  C+D WL
Sbjct: 75  PVIESYPRIVLGDS---RRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWL 134

Query: 137 RLNPSCPVCRTSPVPTPISTPLAEVVPLA 159
           R + +CP+CR SP P+ ++TPL+++VPLA
Sbjct: 135 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of PI0013168 vs. ExPASy TrEMBL
Match: A0A5A7TRH5 (RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004730 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 3.9e-82
Identity = 153/162 (94.44%), Postives = 156/162 (96.30%), Query Frame = 0


Query: 1   MNSSSDSDGGDIGSFPYIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGRRDFV 60
           MNS SDS GGDIGSFP+IVGISVGILFLLTTLTITTYLCTRTTVP PNRRL+Q GRRDFV
Sbjct: 1   MNSPSDSGGGDIGSFPFIVGISVGILFLLTTLTITTYLCTRTTVPQPNRRLQQEGRRDFV 60

Query: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVLRLLPDCGHLF 120
           VDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICL DYKDDDVLRLLPDCGHLF
Sbjct: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLVDYKDDDVLRLLPDCGHLF 120

Query: 121 HGGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 163
           HG CIDPWLRLNPSCPVCRTSP+PTPISTPLAEVVPLAIGRS
Sbjct: 121 HGSCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 162

[Close]

BLAST of PI0013168 vs. ExPASy TrEMBL
Match: A0A0A0LEU3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G782740 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.1e-81
Identity = 151/162 (93.21%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MNSSSDSDGGDIGSFPYIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGRRDFV 60
           MNSS DS GGDIG FPYI+GISVGILFLLTTLTITTYLCTRTTVP PNRRL QGGRRDFV
Sbjct: 1   MNSSPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFV 60

Query: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVLRLLPDCGHLF 120
           VDFVQGLEDEVINGYPKILYSEAKLERKLESAA NGCSICL DYKDDDVLRLLPDCGHLF
Sbjct: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLF 120

Query: 121 HGGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 163
           H GCIDPWLRLNPSCPVCRTSPVPTPISTPLAEV+PLA+GRS
Sbjct: 121 HCGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVIPLAVGRS 162

[Close]

BLAST of PI0013168 vs. ExPASy TrEMBL
Match: A0A6J1F576 (RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111442240 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.4e-70
Identity = 133/166 (80.12%), Postives = 146/166 (87.95%), Query Frame = 0


Query: 1   MNSSSDSDG----GDIGSFPYIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGR 60
           MN+S+ S G    G++G+FPYIVGISVG+LFLLTT+TI TYLCTRTTVP PNRR R G R
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE KLESAAA+GCSICLGDYK++DVLRLLPDC
Sbjct: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHGGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 163
           GH+FH GCIDPWLRLNPSCPVCRTSPVPTP+STPLAEVVPLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of PI0013168 vs. ExPASy TrEMBL
Match: A0A6J1J186 (RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111481769 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.3e-69
Identity = 131/166 (78.92%), Postives = 145/166 (87.35%), Query Frame = 0


Query: 1   MNSSSDSDG----GDIGSFPYIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGR 60
           MN+S+ S G    G++G+FPYIVGISVG+LFLLTT+TI TYLCTRTTVP  NRR R G R
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQLNRRRRPGER 60

Query: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE K+ESAAA+GCSICLGDYK++DVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHGGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 163
           GH+FH GCIDPWLRLNPSCPVCRTSPVPTP+STPLAEVVPLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of PI0013168 vs. ExPASy TrEMBL
Match: A0A7J8RQQ2 (RING-type domain-containing protein OS=Gossypium davidsonii OX=34287 GN=Godav_015786 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-47
Identity = 103/168 (61.31%), Postives = 126/168 (75.00%), Query Frame = 0


Query: 1   MNSSSDSDGG-----DIGSFPYIVGISVGILFLLTTLTITTYLCTRTTVP--APNRRLRQ 60
           MNS+SD++ G     +IG F Y +G+SVGIL L+TT+T+ +Y CTRT  P  AP RR RQ
Sbjct: 1   MNSTSDANDGLLGSNNIGGFGYGIGVSVGILLLITTITLASYFCTRTQPPQGAPARRTRQ 60

Query: 61  GGRRD---FVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVL 120
               D   FVVD   GL++E I  YPK+LYSEAKL++K   + A+ CSICL DYK  D+L
Sbjct: 61  EPNIDPDSFVVDL--GLDEETIKSYPKLLYSEAKLQKK--DSTASCCSICLADYKSSDML 120

Query: 121 RLLPDCGHLFHGGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLA 159
           RLLPDC HLFH  C+DPWLRLNP+CPVCRTSP+PTP+STPLAEVVPL+
Sbjct: 121 RLLPDCNHLFHLKCVDPWLRLNPTCPVCRTSPIPTPLSTPLAEVVPLS 164

[Close]

BLAST of PI0013168 vs. NCBI nr
Match: KAA0043799.1 (RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa] >TYK25334.1 RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 8.0e-82
Identity = 153/162 (94.44%), Postives = 156/162 (96.30%), Query Frame = 0


Query: 1   MNSSSDSDGGDIGSFPYIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGRRDFV 60
           MNS SDS GGDIGSFP+IVGISVGILFLLTTLTITTYLCTRTTVP PNRRL+Q GRRDFV
Sbjct: 1   MNSPSDSGGGDIGSFPFIVGISVGILFLLTTLTITTYLCTRTTVPQPNRRLQQEGRRDFV 60

Query: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVLRLLPDCGHLF 120
           VDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICL DYKDDDVLRLLPDCGHLF
Sbjct: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLVDYKDDDVLRLLPDCGHLF 120

Query: 121 HGGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 163
           HG CIDPWLRLNPSCPVCRTSP+PTPISTPLAEVVPLAIGRS
Sbjct: 121 HGSCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 162

[Close]

BLAST of PI0013168 vs. NCBI nr
Match: KGN59365.2 (hypothetical protein Csa_002562 [Cucumis sativus])

HSP 1 Score: 311.2 bits (796), Expect = 5.2e-81
Identity = 150/162 (92.59%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MNSSSDSDGGDIGSFPYIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGRRDFV 60
           MNSS DS GGDIG FPYI+GISVGILFLLTTLTITTYLCTRTTVP PNRRL QGGRRDFV
Sbjct: 1   MNSSPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFV 60

Query: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVLRLLPDCGHLF 120
           VDFVQGLEDEVINGYPKILYSEAKLERKLESAA NGCSICL DYKDDDVLRLLPDCGHLF
Sbjct: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLF 120

Query: 121 HGGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 163
           H GCIDPWLRLNPSCPVCRTSPVPTPISTPLAEV+PLA+GR+
Sbjct: 121 HCGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVIPLAVGRN 162

[Close]

BLAST of PI0013168 vs. NCBI nr
Match: XP_022935317.1 (RING-H2 finger protein ATL70-like [Cucurbita moschata])

HSP 1 Score: 273.9 bits (699), Expect = 9.1e-70
Identity = 133/166 (80.12%), Postives = 146/166 (87.95%), Query Frame = 0


Query: 1   MNSSSDSDG----GDIGSFPYIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGR 60
           MN+S+ S G    G++G+FPYIVGISVG+LFLLTT+TI TYLCTRTTVP PNRR R G R
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE KLESAAA+GCSICLGDYK++DVLRLLPDC
Sbjct: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHGGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 163
           GH+FH GCIDPWLRLNPSCPVCRTSPVPTP+STPLAEVVPLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of PI0013168 vs. NCBI nr
Match: XP_023528902.1 (RING-H2 finger protein ATL70 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.5 bits (698), Expect = 1.2e-69
Identity = 132/166 (79.52%), Postives = 146/166 (87.95%), Query Frame = 0


Query: 1   MNSSSDSDG----GDIGSFPYIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGR 60
           MN+S+ S G    G++G+FPYIVGISVG+LFLLTT+TI TYLCTRTTVP PNRR R G R
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE K+ESAAA+GCSICLGDYK++DVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHGGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 163
           GH+FH GCIDPWLRLNPSCPVCRTSPVPTP+STPLAEVVPLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of PI0013168 vs. NCBI nr
Match: KAG6580759.1 (putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017512.1 putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272.7 bits (696), Expect = 2.0e-69
Identity = 132/165 (80.00%), Postives = 145/165 (87.88%), Query Frame = 0


Query: 1   MNSSSDSDG----GDIGSFPYIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGR 60
           MN+S+ S G    G++G+FPYIVGISVG+LFLLTT+TI TYLCTRTTVP PNRR R G R
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE KLESAAA+GCSICLGDYK++DVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHGGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGR 162
           GH+FH GCIDPWLRLNPSCPVCRTSPVPTP+STPLAEVVPLA GR
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 165

[Close]

BLAST of PI0013168 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.5 bits (441), Expect = 7.0e-44
Identity = 85/154 (55.19%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 11  DIGSFPYIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGRR------DFVVDFV 70
           DIG F Y +G+S+G+L L+TT+T+T+Y CTR  + +   +  Q   R        ++D V
Sbjct: 60  DIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIIDVV 119

Query: 71  QGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVLRLLPDCGHLFHGGC 130
            GL+++ I  YPKILYSEAK         A+ C+ICLGDYK   +LR LPDC HLFH  C
Sbjct: 120 PGLDEDTIQSYPKILYSEAK-----GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKC 179

Query: 131 IDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLA 159
           ID WLRLNP+CPVCRTSP+PTP+STPLAEVVPLA
Sbjct: 180 IDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLA 208

[Close]

BLAST of PI0013168 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 163.3 bits (412), Expect = 1.6e-40
Identity = 82/171 (47.95%), Postives = 109/171 (63.74%), Query Frame = 0


Query: 12  IGSFPYIVGISVGILFLLTTLTITTYLCTR-------TTVPAPNRRLRQGG--------- 71
           +G   Y +G+S+GIL L+TT+T+T+Y CTR       TT P   RR R+           
Sbjct: 20  MGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQER 79

Query: 72  ------RRDFVVDFVQGLEDEVINGYPKILYSEAKLERKL--ESAAANGCSICLGDYKDD 131
                   D VV  V GL +EVI G+PK+ Y EA++   L  ES+  + CSICL DYK  
Sbjct: 80  FDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKM 139

Query: 132 DVLRLLPDCGHLFHGGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLA 159
           D++R+LPDC HLFH  C+DPWLRL+P+CPVCRTSP+P+P  TP+A+VVP +
Sbjct: 140 DMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of PI0013168 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-27
Identity = 66/169 (39.05%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 15  FPYIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGRRDFVV------------- 74
           F Y + I++G L LL+T+ +++Y+C R +          G R   V+             
Sbjct: 35  FGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDNE 94

Query: 75  -----DFVQGLEDEVINGYPKILYSEAKLERKLESAAANG---CSICLGDYKDDDVLRLL 134
                D V GL+  VIN YPK  +S+       +     G   CSICL +YK+ ++LR++
Sbjct: 95  DLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMM 154

Query: 135 PDCGHLFHGGCIDPWLRLNPSCPVCRTSPVP----TPISTPLAEVVPLA 159
           P+C H FH  C+D WL+LN SCPVCR SP+P    TP+STPL+EVVPL+
Sbjct: 155 PECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of PI0013168 vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.1 bits (261), Expect = 5.2e-23
Identity = 66/180 (36.67%), Postives = 95/180 (52.78%), Query Frame = 0


Query: 17  YIVGISVGILFLLTTLTITTYLCTRT-----TVPAPNRRLRQG--------GRRDFVVD- 76
           Y + I++G L L++T+ +++Y+C R      +  A N               R  FV + 
Sbjct: 28  YSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFVAED 87

Query: 77  --------FVQGLEDEVINGYPKILYSEAKLERKLESAAANG------------CSICLG 136
                    V GL+  VIN YPK  ++      K  +A  NG            CSICL 
Sbjct: 88  DDLESGNVVVGGLDHSVINSYPKFHFT------KDITAVVNGDGFHDGEGRETTCSICLC 147

Query: 137 DYKDDDVLRLLPDCGHLFHGGCIDPWLRLNPSCPVCRTSPVP----TPISTPLAEVVPLA 159
           +Y ++++LR++P+C H FH  C+D WL+LN SCPVCR SP+P    TP STPL+EVVPL+
Sbjct: 148 EYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

[Close]

BLAST of PI0013168 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 104.8 bits (260), Expect = 6.8e-23
Identity = 54/149 (36.24%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 17  YIVGISVGILFLLTTLTITTYLCTRTTVPAPNRRLRQGGRRDFVVDFVQ-------GLED 76
           Y + I+V IL L++ + + +Y+C R+         R     D V+D          GL+ 
Sbjct: 15  YGIAIAVSILVLISFIMLASYICIRSKSTG-----RDEATSDVVLDLPSPAAEVKLGLDR 74

Query: 77  EVINGYPKILYSEAKLERKLESAAANGCSICLGDYKDDDVLRLLPDCGHLFHGGCIDPWL 136
            VI  YP+I+  ++   R+L       CSICL DY+  + +R +P+C H FH  C+D WL
Sbjct: 75  PVIESYPRIVLGDS---RRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWL 134

Query: 137 RLNPSCPVCRTSPVPTPISTPLAEVVPLA 159
           R + +CP+CR SP P+ ++TPL+++VPLA
Sbjct: 135 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

The following BLAST results are available for this feature:

BLAST of PI0013168 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RX29	9.9e-43	55.19	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9FG21	2.3e-39	47.95	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
O82353	3.8e-26	39.05	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
Q9M313	7.4e-22	36.67	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]
Q9FL42	9.6e-22	36.24	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]

BLAST of PI0013168 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRH5	3.9e-82	94.44	RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0LEU3	1.1e-81	93.21	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G782740 P...	[more]
A0A6J1F576	4.4e-70	80.12	RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111442240 ...	[more]
A0A6J1J186	8.3e-69	78.92	RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111481769 PE...	[more]
A0A7J8RQQ2	1.8e-47	61.31	RING-type domain-containing protein OS=Gossypium davidsonii OX=34287 GN=Godav_01...	[more]

BLAST of PI0013168 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043799.1	8.0e-82	94.44	RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa] >TYK25334.1 RING-H2...	[more]
KGN59365.2	5.2e-81	92.59	hypothetical protein Csa_002562 [Cucumis sativus]	[more]
XP_022935317.1	9.1e-70	80.12	RING-H2 finger protein ATL70-like [Cucurbita moschata]	[more]
XP_023528902.1	1.2e-69	79.52	RING-H2 finger protein ATL70 [Cucurbita pepo subsp. pepo]	[more]
KAG6580759.1	2.0e-69	80.00	putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of PI0013168 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35910.1	7.0e-44	55.19	RING/U-box superfamily protein	[more]
AT5G06490.1	1.6e-40	47.95	RING/U-box superfamily protein	[more]
AT2G46160.1	2.7e-27	39.05	RING/U-box superfamily protein	[more]
AT3G61550.1	5.2e-23	36.67	RING/U-box superfamily protein	[more]
AT5G07040.1	6.8e-23	36.24	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 97..138 e-value: 1.9E-8 score: 44.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 97..139 e-value: 2.0E-14 score: 53.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 97..139 score: 12.69582
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 61..144 e-value: 7.7E-21 score: 75.6
None	No IPR available	PANTHER	PTHR46719:SF7	RING-H2 FINGER PROTEIN ATL71-RELATED	coord: 9..160
None	No IPR available	PANTHER	PTHR46719	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 9..160
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 97..139 e-value: 1.10854E-20 score: 77.7273
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 71..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013168.1	PI0013168.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding