PI0013116 (gene) Melon (PI 482460) v1

Overview


Name	PI0013116
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ras-related protein RABA5b-like
Location	chr07: 2278478 .. 2279005 (+)
RNA-Seq Expression	PI0013116
Synteny	PI0013116

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCCGTGTTCAACCTTGTTTTGATCGAAGACTCTGTTATCGGGAAATCGAAGCTCCTCTTGCCATTCCATCGGAATGAGATTGATGTTAACTACAAGGCCTCAATCGGCGTCGAGTTTCAGATTCAAGTGCTGAAAATCAATGGCAAAGAGGTTAAGTCTCTCATGTGAGACTTTTGTTTCTTCATCTTATGTCTTTTAATCTAAAATTTATCCCTCGTTTCATTTGTTCGATGCCATCTGAGGATTTCTCTTCCCTAATGTTTCCACTGATCCAGATTTCAAAATAGGGGATTCTTGTATGATGGGTTTTGGTGGAGGAATCCCCAAACAAAAAAAAAATACCTTTTAATAATCCCTTAACCCGAAGATTGGTTGGATTATTTTTTTCAAGTTCCAGTTTTTTCATTTAGGTGATGAAGTTTTTCCTCTCTTTGGTTGCAGTATGAAGGAGATATGAAAAGGATGAACATATTTCGCTGGCGAAATGTGCACTTTATAATTGTTCCAAGCTTGAGGAAATGA

mRNA sequence

ATGGTGGCCGTGTTCAACCTTGTTTTGATCGAAGACTCTGTTATCGGGAAATCGAAGCTCCTCTTGCCATTCCATCGGAATGAGATTGATGTTAACTACAAGGCCTCAATCGGCGTCGAGTTTCAGATTCAAGTGCTGAAAATCAATGGCAAAGAGTATGAAGGAGATATGAAAAGGATGAACATATTTCGCTGGCGAAATGTGCACTTTATAATTGTTCCAAGCTTGAGGAAATGA

Coding sequence (CDS)

ATGGTGGCCGTGTTCAACCTTGTTTTGATCGAAGACTCTGTTATCGGGAAATCGAAGCTCCTCTTGCCATTCCATCGGAATGAGATTGATGTTAACTACAAGGCCTCAATCGGCGTCGAGTTTCAGATTCAAGTGCTGAAAATCAATGGCAAAGAGTATGAAGGAGATATGAAAAGGATGAACATATTTCGCTGGCGAAATGTGCACTTTATAATTGTTCCAAGCTTGAGGAAATGA

Protein sequence

MVAVFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDMKRMNIFRWRNVHFIIVPSLRK

Homology

[Close]

BLAST of PI0013116 vs. ExPASy Swiss-Prot
Match: Q9SRS5 (Ras-related protein RABA5b OS=Arabidopsis thaliana OX=3702 GN=RABA5B PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-08
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM 58
          +F +VLI DS +GKS LL  F R+E D N KA+IGVEFQ Q+++I GKE +  +
Sbjct: 12 LFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIEGKEVKAQI 65

[Close]

BLAST of PI0013116 vs. ExPASy Swiss-Prot
Match: P19892 (Ras-related protein RABA5e OS=Arabidopsis thaliana OX=3702 GN=RABA5E PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM 58
          +F +V+I DS +GKS LL  + RNE   N KA+IGVEFQ Q ++I GKE +  +
Sbjct: 12 LFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQI 65

[Close]

BLAST of PI0013116 vs. ExPASy Swiss-Prot
Match: P28187 (Ras-related protein RABA5c OS=Arabidopsis thaliana OX=3702 GN=RABA5C PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-07
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM 58
          +F +V+I DS +GKS LL  + RNE + N KA+IGVEFQ Q + I+GKE +  +
Sbjct: 12 LFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQI 65

[Close]

BLAST of PI0013116 vs. ExPASy Swiss-Prot
Match: Q9FGK5 (Ras-related protein RABA5a OS=Arabidopsis thaliana OX=3702 GN=RABA5A PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-07
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM 58
          +F +VLI DS +GKS LL  F R+E   N K++IGVEFQ Q + INGKE +  +
Sbjct: 14 LFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEIKAQI 67

[Close]

BLAST of PI0013116 vs. ExPASy Swiss-Prot
Match: Q9SIP0 (Ras-related protein RABA5d OS=Arabidopsis thaliana OX=3702 GN=RABA5D PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-07
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM 58
          +F +V+I DS +GKS LL  + RNE + + KA+IGVEFQ Q ++I GKE +  +
Sbjct: 12 LFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQNMEIEGKEVKAQI 65

[Close]

BLAST of PI0013116 vs. ExPASy TrEMBL
Match: A0A0A0KVZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011610 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-14
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDMKRM--- 63
          +FNLVLI++SV+GKS LLLPF RNEIDVNYKASIGVEFQIQVLKINGKE +  + R    
Sbjct: 1  MFNLVLIDNSVLGKSNLLLPFCRNEIDVNYKASIGVEFQIQVLKINGKEVKSLIFRSRGF 60

Query: 64 --NIFRWRN 68
            + F WRN
Sbjct: 61 LDDGFWWRN 69

[Close]

BLAST of PI0013116 vs. ExPASy TrEMBL
Match: A0A5A7TT53 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002930 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.9e-12
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1  MVAVFNLVLIEDSVIGKSKLLLPFHRNEI-DVNYKASIGVEFQIQVLKINGKEYEGDMK 59
          MVA+FNLVL ++SVIGKSK LLPF  NEI DV YKASIGVEFQIQVL +NGKE +  M+
Sbjct: 1  MVAMFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLMR 59

[Close]

BLAST of PI0013116 vs. ExPASy TrEMBL
Match: A0A5D3D0L2 (Ras-related protein RABA5b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001860 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MVAVFNLVLIEDSVIGKSKLLLPFHRNEI-DVNYKASIGVEFQIQVLKINGKEYEGDM 58
          MVA+FNLVL ++SVIGKSK LLPF  NEI DV YKASIGVEFQIQVL +NGKE +  M
Sbjct: 1  MVAMFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLM 58

[Close]

BLAST of PI0013116 vs. ExPASy TrEMBL
Match: A0A7J9KE47 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_005829 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-07
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM 58
          +F +VLI DS +GKS LL  F RNE D N KA+IGVEFQ QV++INGKE +  +
Sbjct: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQTQVVEINGKEIKAQI 67

[Close]

BLAST of PI0013116 vs. ExPASy TrEMBL
Match: A0A445BSW9 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A07g035319 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.7e-07
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM 58
          +F +VLI DS +GKS LL  F RNE D N KA+IGVEFQ QV++I GKE +  +
Sbjct: 12 LFKIVLIGDSAVGKSNLLSRFARNEFDTNSKATIGVEFQTQVVEIEGKEVKAQI 65

[Close]

BLAST of PI0013116 vs. NCBI nr
Match: KGN53014.1 (hypothetical protein Csa_015426 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 3.4e-14
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDMKRM--- 63
          +FNLVLI++SV+GKS LLLPF RNEIDVNYKASIGVEFQIQVLKINGKE +  + R    
Sbjct: 1  MFNLVLIDNSVLGKSNLLLPFCRNEIDVNYKASIGVEFQIQVLKINGKEVKSLIFRSRGF 60

Query: 64 --NIFRWRN 68
            + F WRN
Sbjct: 61 LDDGFWWRN 69

[Close]

BLAST of PI0013116 vs. NCBI nr
Match: KAA0044545.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-11
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1  MVAVFNLVLIEDSVIGKSKLLLPFHRNEI-DVNYKASIGVEFQIQVLKINGKEYEGDMK 59
          MVA+FNLVL ++SVIGKSK LLPF  NEI DV YKASIGVEFQIQVL +NGKE +  M+
Sbjct: 1  MVAMFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLMR 59

[Close]

BLAST of PI0013116 vs. NCBI nr
Match: TYK17038.1 (ras-related protein RABA5b-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.1e-11
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MVAVFNLVLIEDSVIGKSKLLLPFHRNEI-DVNYKASIGVEFQIQVLKINGKEYEGDM 58
          MVA+FNLVL ++SVIGKSK LLPF  NEI DV YKASIGVEFQIQVL +NGKE +  M
Sbjct: 1  MVAMFNLVLNDNSVIGKSKFLLPFRWNEIDDVKYKASIGVEFQIQVLTVNGKEVKSLM 58

[Close]

BLAST of PI0013116 vs. NCBI nr
Match: MBA0844539.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 64.3 bits (155), Expect = 5.3e-07
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM 58
          +F +VLI DS +GKS LL  F RNE D N KA+IGVEFQ QV++INGKE +  +
Sbjct: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDNNSKATIGVEFQTQVVEINGKEIKAQI 67

[Close]

BLAST of PI0013116 vs. NCBI nr
Match: XP_021907378.1 (ras-related protein RABA5b [Carica papaya])

HSP 1 Score: 64.3 bits (155), Expect = 5.3e-07
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM 58
          +F +VLI DS +GKS LL  F RNE D N KA+IGVEFQ QV++I+GKE +  +
Sbjct: 12 LFKIVLIGDSAVGKSNLLSRFSRNEFDTNTKATIGVEFQTQVMEIDGKEIKAQI 65

[Close]

BLAST of PI0013116 vs. TAIR 10
Match: AT3G07410.1 (RAB GTPase homolog A5B )

HSP 1 Score: 60.5 bits (145), Expect = 7.1e-10
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM 58
          +F +VLI DS +GKS LL  F R+E D N KA+IGVEFQ Q+++I GKE +  +
Sbjct: 12 LFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIEGKEVKAQI 65

[Close]

BLAST of PI0013116 vs. TAIR 10
Match: AT1G05810.1 (RAB GTPase homolog A5E )

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-08
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 4   VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM 58
           +F +V+I DS +GKS LL  + RNE   N KA+IGVEFQ Q ++I GKE +  +
Sbjct: 55  LFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQI 108

[Close]

BLAST of PI0013116 vs. TAIR 10
Match: AT2G43130.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM 58
          +F +V+I DS +GKS LL  + RNE + N KA+IGVEFQ Q + I+GKE +  +
Sbjct: 12 LFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQI 65

[Close]

BLAST of PI0013116 vs. TAIR 10
Match: AT5G47520.1 (RAB GTPase homolog A5A )

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-08
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM 58
          +F +VLI DS +GKS LL  F R+E   N K++IGVEFQ Q + INGKE +  +
Sbjct: 14 LFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEIKAQI 67

[Close]

BLAST of PI0013116 vs. TAIR 10
Match: AT2G31680.1 (RAB GTPase homolog A5D )

HSP 1 Score: 55.1 bits (131), Expect = 3.0e-08
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 4  VFNLVLIEDSVIGKSKLLLPFHRNEIDVNYKASIGVEFQIQVLKINGKEYEGDM 58
          +F +V+I DS +GKS LL  + RNE + + KA+IGVEFQ Q ++I GKE +  +
Sbjct: 12 LFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQNMEIEGKEVKAQI 65

The following BLAST results are available for this feature:

BLAST of PI0013116 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRS5	1.0e-08	53.70	Ras-related protein RABA5b OS=Arabidopsis thaliana OX=3702 GN=RABA5B PE=1 SV=1	[more]
P19892	1.4e-07	50.00	Ras-related protein RABA5e OS=Arabidopsis thaliana OX=3702 GN=RABA5E PE=2 SV=1	[more]
P28187	1.9e-07	50.00	Ras-related protein RABA5c OS=Arabidopsis thaliana OX=3702 GN=RABA5C PE=1 SV=1	[more]
Q9FGK5	2.5e-07	51.85	Ras-related protein RABA5a OS=Arabidopsis thaliana OX=3702 GN=RABA5A PE=1 SV=1	[more]
Q9SIP0	4.2e-07	48.15	Ras-related protein RABA5d OS=Arabidopsis thaliana OX=3702 GN=RABA5D PE=1 SV=1	[more]

BLAST of PI0013116 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVZ8	1.7e-14	69.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011610 PE=4 SV=1	[more]
A0A5A7TT53	5.9e-12	72.88	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3D0L2	1.0e-11	74.14	Ras-related protein RABA5b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A7J9KE47	2.6e-07	59.26	Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_005829 PE=4 S...	[more]
A0A445BSW9	5.7e-07	57.41	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A07g035319 PE=4 SV=1	[more]

BLAST of PI0013116 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53014.1	3.4e-14	69.57	hypothetical protein Csa_015426 [Cucumis sativus]	[more]
KAA0044545.1	1.2e-11	72.88	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
TYK17038.1	2.1e-11	74.14	ras-related protein RABA5b-like [Cucumis melo var. makuwa]	[more]
MBA0844539.1	5.3e-07	59.26	hypothetical protein [Gossypium armourianum]	[more]
XP_021907378.1	5.3e-07	57.41	ras-related protein RABA5b [Carica papaya]	[more]

BLAST of PI0013116 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07410.1	7.1e-10	53.70	RAB GTPase homolog A5B	[more]
AT1G05810.1	1.0e-08	50.00	RAB GTPase homolog A5E	[more]
AT2G43130.1	1.3e-08	50.00	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT5G47520.1	1.8e-08	51.85	RAB GTPase homolog A5A	[more]
AT2G31680.1	3.0e-08	48.15	RAB GTPase homolog A5D	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 28..44 score: 24.39 coord: 5..26 score: 37.42
None	No IPR available	PANTHER	PTHR47978	FAMILY NOT NAMED	coord: 4..54
None	No IPR available	PANTHER	PTHR47978:SF11	RAB FAMILY GTPASE	coord: 4..54
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 7..54 e-value: 3.1E-6 score: 26.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 2..70 e-value: 2.0E-6 score: 29.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 4..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013116.1	PI0013116.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005768	endosome
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0008270	zinc ion binding