PI0013067 (gene) Melon (PI 482460) v1

Overview


Name	PI0013067
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr05: 12884735 .. 12886388 (+)
RNA-Seq Expression	PI0013067
Synteny	PI0013067

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCCACTTCTTCTCGCTCGAGATGGAGAATCAAAGATCATTAACGAGATTCTTTCTATAAGCTTTGCTACTGAAACAGAGAAGTCAGTTGCCTCCTTCGAGCACCAAGGACCTTCAAGCTGCGGGGCTGGGGTCGAATTGATGTACCCACATATTCAACCTCTACATCAAGGTAAGATTGACTTCTTTCACAATTGATTTGAAAGGAGAGATTTCTTTTCATGAGGACCAAAAGACTCCAAAGTCAGAACCGGAGCCAAGGTTCAAAGAATATTTTAGAGAAAGTCAGAAACCTACTAAAAGCTTAGAAGAAGAAAGACTGAGAGGATCTGAAGAGGCTCGACTAAAAGGAGAGGATCGAAAGAGGCTCGACTGAGGTCACGAAGGAGAGGATCTGAAGAGGCGAGACTCTTTATTAATAACACGCGAAAAACTATCTTGAGAGTTATTATAAGCGTGCTATGCACCCAACCCATGCATCCAATGTGTGTCATGCGTGCAAGCCATGTGGCTAGTGGGTGCTATGTGTCATGAGCATGCTTGTCCAAGACGTTGTTTGCCTATGGCAGCATGCCCAAACATCTTCACACCACCTTAGGTTTATGCTTTCTTTTATTTTCTATGTCGCTTCCTTTATTTTTCTATGTCACTGCTTGTAAGTGACGTTTCACACATTTTAATATGCAAGCCTGTCAGATCATAAAATGTTAAAATGTACTATAGAGGAGTCCCACTAGTCATATCCCTAACTAAGCCTTATTGTACTCTTTACAAACTAAACTTTCCTTGCAATTGACAGTCTTCAATGCTTTTTTTAATGATGTTTTCAACAATTTACTTTCTCTCTCATGTTTTATAAAAACCATTTTCTCTCAAAATGTGAAGGGAGGCTACATCATTCTGCGAGTTTGTCCGTGGGTTTCGGATTTCGAACGACTGACTTGTTTATCGAGTTAGAACAAGTGCCGCACAATCGCTTGCCTTGTCTTTGAAAGACTGCGATTATGCAAGTGGTATCAGAGCCTCATTGGCTTATTGACGGTTGAGACACAGACATGTCCACAACGAAACAGATGGACAAGTCCCATGTAGACCGATTGGTAGAGATTGAAGAGCATATGCTCTAACTAGTGGAAGTTCCGGACGTCGTCCGCTTCTTGGAAACCCAAATTCAAGAAATTTCCGAGAAAGTCGACGCTATTGATGCGATAACCGATCGCCTCGATGGATTACCTATAAGTGAGCTGTTGACAAGAGTTGACACTCTAGAGGCAAAAGCTGCAAGAACTGGTAACTACGAGCGGGGGACAGTTCAACGGACTTTGTTGCCCACATAGAAGAACGGGTTAACGAGCTAGATACCTCCCAAAAGTCGATTGTTGAGATGATAAATGGCATGTCAGAGGATTTTCGTGCTGCTCTTGACGTCGTCAGGAATGAGATCGCTGACGTGAGCACGAGGGTGAACCTCACGATGCAAGCCATGGCAAACCAAGCTCCAGCTGGAGGAGCAATGCAAGTTAACAGAGTGAAGATCCTCGAACCCAAACCCTTCTGTGGGGCAAGGGATGCAAAAACCTTGGCGACTACATATTTGATCTCAAACAATACTTCTGGGCCACAAACACAGTTACAGAAGAAGCGAAAGTGA

mRNA sequence

ATGCTTCCACTTCTTCTCGCTCGAGATGGAGAATCAAAGATCATTAACGAGATTCTTTCTATAAGCTTTGCTACTGAAACAGAGAAGTCAGTTGCCTCCTTCGAGCACCAAGGACCTTCAAGCTGCGGGGCTGGGGTCGAATTGATGTACCCACATATTCAACCTCTACATCAAGTGGAAGTTCCGGACGTCGTCCGCTTCTTGGAAACCCAAATTCAAGAAATTTCCGAGAAAGTCGACGCTATTGATGCGATAACCGATCGCCTCGATGGATTACCTATAAGTGAGCTGTTGACAAGAGTTGACACTCTAGAGGCAAAAGCTGCAAGAACTGAGGATTTTCGTGCTGCTCTTGACGTCGTCAGGAATGAGATCGCTGACGTGAGCACGAGGGTGAACCTCACGATGCAAGCCATGGCAAACCAAGCTCCAGCTGGAGGAGCAATGCAAGTTAACAGAGTGAAGATCCTCGAACCCAAACCCTTCTGTGGGGCAAGGGATGCAAAAACCTTGGCGACTACATATTTGATCTCAAACAATACTTCTGGGCCACAAACACAGTTACAGAAGAAGCGAAAGTGA

Coding sequence (CDS)

ATGCTTCCACTTCTTCTCGCTCGAGATGGAGAATCAAAGATCATTAACGAGATTCTTTCTATAAGCTTTGCTACTGAAACAGAGAAGTCAGTTGCCTCCTTCGAGCACCAAGGACCTTCAAGCTGCGGGGCTGGGGTCGAATTGATGTACCCACATATTCAACCTCTACATCAAGTGGAAGTTCCGGACGTCGTCCGCTTCTTGGAAACCCAAATTCAAGAAATTTCCGAGAAAGTCGACGCTATTGATGCGATAACCGATCGCCTCGATGGATTACCTATAAGTGAGCTGTTGACAAGAGTTGACACTCTAGAGGCAAAAGCTGCAAGAACTGAGGATTTTCGTGCTGCTCTTGACGTCGTCAGGAATGAGATCGCTGACGTGAGCACGAGGGTGAACCTCACGATGCAAGCCATGGCAAACCAAGCTCCAGCTGGAGGAGCAATGCAAGTTAACAGAGTGAAGATCCTCGAACCCAAACCCTTCTGTGGGGCAAGGGATGCAAAAACCTTGGCGACTACATATTTGATCTCAAACAATACTTCTGGGCCACAAACACAGTTACAGAAGAAGCGAAAGTGA

Protein sequence

MLPLLLARDGESKIINEILSISFATETEKSVASFEHQGPSSCGAGVELMYPHIQPLHQVEVPDVVRFLETQIQEISEKVDAIDAITDRLDGLPISELLTRVDTLEAKAARTEDFRAALDVVRNEIADVSTRVNLTMQAMANQAPAGGAMQVNRVKILEPKPFCGARDAKTLATTYLISNNTSGPQTQLQKKRK

Homology

[Close]

BLAST of PI0013067 vs. ExPASy TrEMBL
Match: A0A5A7TBY4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2047G00180 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 7.4e-32
Identity = 75/113 (66.37%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 59  VEVPDVVRFLETQIQEISEKVDAIDAITDRLDGLPISELLTRVDTLEAKAARTEDFRAAL 118
           VEV D +RFLE++++E+ EK DAIDA+  R+ GLPI ELL RVDTLE     +EDF A L
Sbjct: 5   VEVSDSIRFLESRLEEMFEKADAIDAVAGRVKGLPIHELLARVDTLEMTNDMSEDFGATL 64

Query: 119 DVVRNEIADVSTRVNLTMQAMANQAPAGGAMQVNRVKILEPKPFCGARDAKTL 172
           DVVRNEI DV+TR+N TM+AM N APAGGA+ V++VKIL+PKPFCGARDAK L
Sbjct: 65  DVVRNEIVDVNTRLNFTMRAMENHAPAGGAISVSKVKILKPKPFCGARDAKAL 117

[Close]

BLAST of PI0013067 vs. ExPASy TrEMBL
Match: A0A5D3DK41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00550 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31
Identity = 89/158 (56.33%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 54  QPLHQVEVPDVVRFLETQIQEISEKVDAIDAITDRLDGLPISELLTRVDTLEAKAART-- 113
           Q L+ VEVPD V FLET  QE SEK+DAIDA+TDRLDGLPI ELLTR+DTLE K  RT  
Sbjct: 99  QMLYLVEVPDFVHFLETHTQENSEKIDAIDAVTDRLDGLPIQELLTRIDTLETKFVRTGN 158

Query: 114 ------------------------------------EDFRAALDVVRNEIADVSTRVNLT 172
                                               EDF AAL+VVRNEIA+VSTRVNLT
Sbjct: 159 YERGNSSTGSIADIEEHVGELDSSQKTIMEIINDMLEDFLAALNVVRNEIANVSTRVNLT 218

[Close]

BLAST of PI0013067 vs. ExPASy TrEMBL
Match: A0A5D3E355 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00500 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.8e-31
Identity = 85/178 (47.75%), Postives = 107/178 (60.11%), Query Frame = 0


Query: 54  QPLHQVEVPDVVRFLETQIQEISEKVDAIDAITDRLDGLPISELLTRVDTLEAKAART-- 113
           Q L+  EVPD +RFLE++++EI+EK D ID +  R++GLPI ELL RV+TLE    RT  
Sbjct: 21  QMLYLAEVPDSIRFLESRLEEITEKTDTIDVVAGRVEGLPIQELLARVNTLEGNIRRTVS 80

Query: 114 ------------------------------------EDFRAALDVVRNEIADVSTRVNLT 173
                                               EDFRA LDVVRNEIADV+ R+N+T
Sbjct: 81  YEYGDSSSGFVAHMEERINELDSSQKTLLEIINNMSEDFRATLDVVRNEIADVNARLNIT 140

Query: 174 MQAMANQAPAGGAMQVNRVKILEPKPFCGARDAKTLATTYLISNNTSGPQTQLQKKRK 194
           ++A+ANQAPAGGA+ V RVKILEPKPFCG    +   T +L  ++TS PQT L KK K
Sbjct: 141 IRAIANQAPAGGAILVIRVKILEPKPFCGQEMQRPWKTIFLTLSSTSWPQTWLSKKSK 198

[Close]

BLAST of PI0013067 vs. ExPASy TrEMBL
Match: A0A5D3DVV7 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00030 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.8e-31
Identity = 85/172 (49.42%), Postives = 103/172 (59.88%), Query Frame = 0


Query: 56  LHQVEVPDVVRFLETQIQEISEKVDAIDAITDRLDGLPISELLTRVDTLEAKAART---- 115
           L+ VEVPD +RFLE++++EI+EK D IDA+  R++GLPI ELL RVDTLE    RT    
Sbjct: 2   LYLVEVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLPIQELLARVDTLEGTVGRTGSHE 61

Query: 116 ----------------------------------EDFRAALDVVRNEIADVSTRVNLTMQ 175
                                             EDFRA LDV+RNEIA V+ R++LTM+
Sbjct: 62  RGDSSTGSVAHIEERVKELDSSQKTLLEMINGTSEDFRATLDVIRNEIAYVNARLSLTMR 121

Query: 176 AMANQAPAGGAMQVNRVKILEPKPFCGARDAKTLAT------TYLISNNTSG 184
           AMANQAPAGGA+ V+RVKILEPKPFCG RDAK L         Y  + NT G
Sbjct: 122 AMANQAPAGGAIPVSRVKILEPKPFCGVRDAKALENYIFDLEQYFRATNTEG 173

[Close]

BLAST of PI0013067 vs. ExPASy TrEMBL
Match: A0A5D3CQ56 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00340 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.3e-31
Identity = 89/180 (49.44%), Postives = 108/180 (60.00%), Query Frame = 0


Query: 54  QPLHQVEVPDVVRFLETQIQEISEKVDAIDAITDRLDGLPISELLTRVDTLE--AKAART 113
           Q L+ VEVPD +R+LE+++ EISEK D IDA+   ++ LPI ELL RVD LE    A RT
Sbjct: 21  QMLYLVEVPDSIRYLESRVDEISEKADMIDAVAGHVERLPIQELLARVDALEENTNARRT 80

Query: 114 --------------------------------------EDFRAALDVVRNEIADVSTRVN 173
                                                 EDFR  LDVVRNEIADV+ R++
Sbjct: 81  INYERGESSSGFAVHMGERVSELDSAQKTLLEMINGMSEDFRVTLDVVRNEIADVNARLS 140

Query: 174 LTMQAMANQAPAGGAMQVNRVKILEPKPFCGARDAKTLATTYLISNNTSGPQTQLQKKRK 194
           LTM+AMANQAPAGGA+ VN+VK++EPKPFCG RDAK LA T+   N+TS  QT   KK K
Sbjct: 141 LTMRAMANQAPAGGAISVNKVKVIEPKPFCGVRDAKALA-TFSTLNSTSRLQTLSPKKPK 199

[Close]

BLAST of PI0013067 vs. NCBI nr
Match: KAA0039097.1 (uncharacterized protein E6C27_scaffold84G001970 [Cucumis melo var. makuwa] >TYK14886.1 uncharacterized protein E5676_scaffold2047G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-31
Identity = 75/113 (66.37%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 59  VEVPDVVRFLETQIQEISEKVDAIDAITDRLDGLPISELLTRVDTLEAKAARTEDFRAAL 118
           VEV D +RFLE++++E+ EK DAIDA+  R+ GLPI ELL RVDTLE     +EDF A L
Sbjct: 5   VEVSDSIRFLESRLEEMFEKADAIDAVAGRVKGLPIHELLARVDTLEMTNDMSEDFGATL 64

Query: 119 DVVRNEIADVSTRVNLTMQAMANQAPAGGAMQVNRVKILEPKPFCGARDAKTL 172
           DVVRNEI DV+TR+N TM+AM N APAGGA+ V++VKIL+PKPFCGARDAK L
Sbjct: 65  DVVRNEIVDVNTRLNFTMRAMENHAPAGGAISVSKVKILKPKPFCGARDAKAL 117

[Close]

BLAST of PI0013067 vs. NCBI nr
Match: TYK23878.1 (uncharacterized protein E5676_scaffold419G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 4.5e-31
Identity = 89/158 (56.33%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 54  QPLHQVEVPDVVRFLETQIQEISEKVDAIDAITDRLDGLPISELLTRVDTLEAKAART-- 113
           Q L+ VEVPD V FLET  QE SEK+DAIDA+TDRLDGLPI ELLTR+DTLE K  RT  
Sbjct: 99  QMLYLVEVPDFVHFLETHTQENSEKIDAIDAVTDRLDGLPIQELLTRIDTLETKFVRTGN 158

Query: 114 ------------------------------------EDFRAALDVVRNEIADVSTRVNLT 172
                                               EDF AAL+VVRNEIA+VSTRVNLT
Sbjct: 159 YERGNSSTGSIADIEEHVGELDSSQKTIMEIINDMLEDFLAALNVVRNEIANVSTRVNLT 218

[Close]

BLAST of PI0013067 vs. NCBI nr
Match: KAA0046343.1 (uncharacterized protein E6C27_scaffold149G00520 [Cucumis melo var. makuwa] >TYK30507.1 uncharacterized protein E5676_scaffold426G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 5.8e-31
Identity = 85/178 (47.75%), Postives = 107/178 (60.11%), Query Frame = 0


Query: 54  QPLHQVEVPDVVRFLETQIQEISEKVDAIDAITDRLDGLPISELLTRVDTLEAKAART-- 113
           Q L+  EVPD +RFLE++++EI+EK D ID +  R++GLPI ELL RV+TLE    RT  
Sbjct: 21  QMLYLAEVPDSIRFLESRLEEITEKTDTIDVVAGRVEGLPIQELLARVNTLEGNIRRTVS 80

Query: 114 ------------------------------------EDFRAALDVVRNEIADVSTRVNLT 173
                                               EDFRA LDVVRNEIADV+ R+N+T
Sbjct: 81  YEYGDSSSGFVAHMEERINELDSSQKTLLEIINNMSEDFRATLDVVRNEIADVNARLNIT 140

Query: 174 MQAMANQAPAGGAMQVNRVKILEPKPFCGARDAKTLATTYLISNNTSGPQTQLQKKRK 194
           ++A+ANQAPAGGA+ V RVKILEPKPFCG    +   T +L  ++TS PQT L KK K
Sbjct: 141 IRAIANQAPAGGAILVIRVKILEPKPFCGQEMQRPWKTIFLTLSSTSWPQTWLSKKSK 198

[Close]

BLAST of PI0013067 vs. NCBI nr
Match: KAA0066681.1 (uncharacterized protein E6C27_scaffold271G00090 [Cucumis melo var. makuwa] >TYK27831.1 uncharacterized protein E5676_scaffold384G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 9.9e-31
Identity = 85/172 (49.42%), Postives = 103/172 (59.88%), Query Frame = 0


Query: 56  LHQVEVPDVVRFLETQIQEISEKVDAIDAITDRLDGLPISELLTRVDTLEAKAART---- 115
           L+ VEVPD +RFLE++++EI+EK D IDA+  R++GLPI ELL RVDTLE    RT    
Sbjct: 2   LYLVEVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLPIQELLARVDTLEGTVGRTGSHE 61

Query: 116 ----------------------------------EDFRAALDVVRNEIADVSTRVNLTMQ 175
                                             EDFRA LDV+RNEIA V+ R++LTM+
Sbjct: 62  RGDSSTGSVAHIEERVKELDSSQKTLLEMINGTSEDFRATLDVIRNEIAYVNARLSLTMR 121

Query: 176 AMANQAPAGGAMQVNRVKILEPKPFCGARDAKTLAT------TYLISNNTSG 184
           AMANQAPAGGA+ V+RVKILEPKPFCG RDAK L         Y  + NT G
Sbjct: 122 AMANQAPAGGAIPVSRVKILEPKPFCGVRDAKALENYIFDLEQYFRATNTEG 173

[Close]

BLAST of PI0013067 vs. NCBI nr
Match: KAA0047380.1 (uncharacterized protein E6C27_scaffold754G00350 [Cucumis melo var. makuwa] >TYK14057.1 uncharacterized protein E5676_scaffold363G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-30
Identity = 89/180 (49.44%), Postives = 108/180 (60.00%), Query Frame = 0


Query: 54  QPLHQVEVPDVVRFLETQIQEISEKVDAIDAITDRLDGLPISELLTRVDTLE--AKAART 113
           Q L+ VEVPD +R+LE+++ EISEK D IDA+   ++ LPI ELL RVD LE    A RT
Sbjct: 21  QMLYLVEVPDSIRYLESRVDEISEKADMIDAVAGHVERLPIQELLARVDALEENTNARRT 80

Query: 114 --------------------------------------EDFRAALDVVRNEIADVSTRVN 173
                                                 EDFR  LDVVRNEIADV+ R++
Sbjct: 81  INYERGESSSGFAVHMGERVSELDSAQKTLLEMINGMSEDFRVTLDVVRNEIADVNARLS 140

Query: 174 LTMQAMANQAPAGGAMQVNRVKILEPKPFCGARDAKTLATTYLISNNTSGPQTQLQKKRK 194
           LTM+AMANQAPAGGA+ VN+VK++EPKPFCG RDAK LA T+   N+TS  QT   KK K
Sbjct: 141 LTMRAMANQAPAGGAISVNKVKVIEPKPFCGVRDAKALA-TFSTLNSTSRLQTLSPKKPK 199

The following BLAST results are available for this feature:

BLAST of PI0013067 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013067 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBY4	7.4e-32	66.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DK41	2.2e-31	56.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E355	2.8e-31	47.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DVV7	4.8e-31	49.42	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CQ56	6.3e-31	49.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0013067 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039097.1	1.5e-31	66.37	uncharacterized protein E6C27_scaffold84G001970 [Cucumis melo var. makuwa] >TYK1...	[more]
TYK23878.1	4.5e-31	56.33	uncharacterized protein E5676_scaffold419G00550 [Cucumis melo var. makuwa]	[more]
KAA0046343.1	5.8e-31	47.75	uncharacterized protein E6C27_scaffold149G00520 [Cucumis melo var. makuwa] >TYK3...	[more]
KAA0066681.1	9.9e-31	49.42	uncharacterized protein E6C27_scaffold271G00090 [Cucumis melo var. makuwa] >TYK2...	[more]
KAA0047380.1	1.3e-30	49.44	uncharacterized protein E6C27_scaffold754G00350 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of PI0013067 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013067.1	PI0013067.1	mRNA