PI0013046 (gene) Melon (PI 482460) v1

Overview
NamePI0013046
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr12: 17287650 .. 17288288 (-)
RNA-Seq ExpressionPI0013046
SyntenyPI0013046
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAAAGAAAAATAAGAAGGAAGGAATTGAGGATCAATTGCTCAAGTTACGAGTTGATTCTACTAGTGGAGGAGTTAGTCCCAATAATAGAAGTGTACAAGGACGAGAACATGGTGGACGAAGAAGAGGACAAGGACGAGGATGTGGTTGGAGGCCCAATGAAGACAATAAAAATAACTACCAAAGAGGATCGGAAAACTCAACGAAAGGTTGTGGACAAGACAACTCAAGATCAAGAAACATTAAATGTTATAATTGTTAAAAGTTTGGTCATTATGCATCCGAATGTAGAGCTTCTAGAAACAGTAGAGTTGAAGAGAAGACAAACTATATTGAAGATAGAAGTTAAGAATGTGGCACCTTGTTGATGGCTTTCACAAATAGCAAATGGAGCAAAGATAAAACATGGTACCTAGACACTAGGGAAAGCAACCATATGTGTGGAGTAAAAAGCATGTTCATGGAGCTTGACGAATCGATGAATGGTGAGCACCAAGGTAGAAGTAAAAGAAAAAGGTAATATTTTCATCCGATTAAAGAATGGTGAGCACCAACTTGTTTCAAATATCTATTATATGTCAAATATGAAGAGTAATATCTTGAGTCTGAGCCAACTCTTAGAAAAAAGGTTATGA

mRNA sequence

ATGAAGAAAAGAAAAATAAGAAGGAAGGAATTGAGGATCAATTGCTCAAGTTACGAGTTGATTCTACTAGTGGAGGAGTTAGTCCCAATAATAGAAGTGTACAAGGACGAGAACATGGTGGACGAAGAAGAGGACAAGGACGAGGATGTGGTTGGAGGCCCAATGAAGACAATAAAAATAACTACCAAAGAGGATCGGAAAACTCAACGAAAGGTTGTGGACAAGACAACTCAAGATCAAGAAACATTAAATGTTATAATTGTTAAAAGTTTGGTCATTATGCATCCGAATGTAGAGCTTCTAGAAACAGTAGACAAATGGAGCAAAGATAAAACATGGTACCTAGACACTAGGGAAAGCAACCATATGTGTGGAGTAAAAAGCATCACCAAGGTAGAAGTAAAAGAAAAAGGTAATATTTTCATCCGATTAAAGAATGGTGAGCACCAACTTGTTTCAAATATCTATTATATGTCAAATATGAAGAGTAATATCTTGAGTCTGAGCCAACTCTTAGAAAAAAGGTTATGA

Coding sequence (CDS)

ATGAAGAAAAGAAAAATAAGAAGGAAGGAATTGAGGATCAATTGCTCAAGTTACGAGTTGATTCTACTAGTGGAGGAGTTAGTCCCAATAATAGAAGTGTACAAGGACGAGAACATGGTGGACGAAGAAGAGGACAAGGACGAGGATGTGGTTGGAGGCCCAATGAAGACAATAAAAATAACTACCAAAGAGGATCGGAAAACTCAACGAAAGGTTGTGGACAAGACAACTCAAGATCAAGAAACATTAAATGTTATAATTGTTAAAAGTTTGGTCATTATGCATCCGAATGTAGAGCTTCTAGAAACAGTAGACAAATGGAGCAAAGATAAAACATGGTACCTAGACACTAGGGAAAGCAACCATATGTGTGGAGTAAAAAGCATCACCAAGGTAGAAGTAAAAGAAAAAGGTAATATTTTCATCCGATTAAAGAATGGTGAGCACCAACTTGTTTCAAATATCTATTATATGTCAAATATGAAGAGTAATATCTTGAGTCTGAGCCAACTCTTAGAAAAAAGGTTATGA

Protein sequence

MKKRKIRRKELRINCSSYELILLVEELVPIIEVYKDENMVDEEEDKDEDVVGGPMKTIKITTKEDRKTQRKVVDKTTQDQETLNVIIVKSLVIMHPNVELLETVDKWSKDKTWYLDTRESNHMCGVKSITKVEVKEKGNIFIRLKNGEHQLVSNIYYMSNMKSNILSLSQLLEKRL
Homology
[Close]
BLAST of PI0013046 vs. ExPASy TrEMBL
Match: A0A5D3DZJ9 (Lectin receptor kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2406G00040 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.2e-16
Identity = 67/162 (41.36%), Postives = 94/162 (58.02%), Query Frame = 0 

Query: 24  VEELVPIIEVYKDENMVD-EEEDKDEDVVGGPMKTIKITTKEDRKTQRKVVDKTTQDQET 83
           VEELVPII+  KD N+V+ E+E++D+DV+GG MKT  IT KED +TQ+KVVDK TQDQE 
Sbjct: 17  VEELVPIIKANKDGNVVNIEDEEEDKDVLGGSMKTTTITAKEDGETQKKVVDKATQDQEK 76

Query: 84  LNVIIVKSLVIMHPNVELLETVDKWSKDKTWYLDTRESNHMCGVKSI------------- 143
               ++ +            T  +W+KD TWYLDT  +N+MCGV+S+             
Sbjct: 77  EFGTLLMAC-----------TNSEWNKDDTWYLDTGANNNMCGVRSMLVELDESMSANVA 136

Query: 144 ----TKVEVKEKG---NIFIRLKNG---EHQLVSNIYYMSNM 162
               +KVEVK +       ++LKN    EH  V  +  +S++
Sbjct: 137 FGDESKVEVKGRAAQEKQGVKLKNSKALEHTNVCELIKLSSL 167

[Close]
BLAST of PI0013046 vs. ExPASy TrEMBL
Match: A0A2Z6MI82 (CCHC-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_51170 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.9e-14
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 110 DKTWYLDTRESNHMCGVKSI-----------------TKVEVKEKGNIFIRLKNGEHQLV 169
           D  WYLD+  SNHMCG +S+                 +KV VK KGN+ IRLKNG+HQ +
Sbjct: 331 DNQWYLDSGASNHMCGRRSMFVELDESVNGNVAFGDESKVAVKGKGNVLIRLKNGDHQFI 390

Query: 170 SNIYYMSNMKSNILSLSQLLEK 175
           SN+YY+ NMKSNILSL QLLEK
Sbjct: 391 SNVYYVPNMKSNILSLGQLLEK 412

[Close]
BLAST of PI0013046 vs. ExPASy TrEMBL
Match: A0A2Z6MH94 (CCHC-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_315750 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.9e-14
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 110 DKTWYLDTRESNHMCGVKSI-----------------TKVEVKEKGNIFIRLKNGEHQLV 169
           D  WYLD+  SNHMCG +S+                 +KV VK KGN+ IR KNG+HQ +
Sbjct: 329 DNQWYLDSGASNHMCGRRSMFVELDESVNENVAFGDESKVAVKGKGNVVIRFKNGDHQFI 388

Query: 170 SNIYYMSNMKSNILSLSQLLEK 175
           SN+YY+SNMKSNILSL QLLEK
Sbjct: 389 SNVYYVSNMKSNILSLGQLLEK 410

[Close]
BLAST of PI0013046 vs. ExPASy TrEMBL
Match: A0A2Z6NEL1 (Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_394360 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.9e-14
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 110 DKTWYLDTRESNHMCGVKSI-----------------TKVEVKEKGNIFIRLKNGEHQLV 169
           D  WYLD+  SNHMCG +S+                 +KV VK KGN+ IRLKNG+HQ +
Sbjct: 207 DNQWYLDSGASNHMCGRRSMFVELDESVNENVAFGDESKVAVKGKGNVLIRLKNGDHQFI 266

Query: 170 SNIYYMSNMKSNILSLSQLLEK 175
           SN+YY+ NMKSNILSL QLLEK
Sbjct: 267 SNVYYVPNMKSNILSLGQLLEK 288

[Close]
BLAST of PI0013046 vs. ExPASy TrEMBL
Match: A0A2Z6M8Q0 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_293160 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.9e-14
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 110 DKTWYLDTRESNHMCGVKSI-----------------TKVEVKEKGNIFIRLKNGEHQLV 169
           D  WYLD+  SNHMCG +S+                 +KV VK KGN+ IRLKNG+HQ +
Sbjct: 331 DNQWYLDSGASNHMCGRRSMFVELDESVNGNVAFGDESKVAVKGKGNVLIRLKNGDHQFI 390

Query: 170 SNIYYMSNMKSNILSLSQLLEK 175
           SN+YY+ NMKSNILSL QLLEK
Sbjct: 391 SNVYYVPNMKSNILSLGQLLEK 412

[Close]
BLAST of PI0013046 vs. NCBI nr
Match: KAA0040440.1 (lectin receptor kinase [Cucumis melo var. makuwa] >TYK28888.1 lectin receptor kinase [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-15
Identity = 67/162 (41.36%), Postives = 94/162 (58.02%), Query Frame = 0 

Query: 24  VEELVPIIEVYKDENMVD-EEEDKDEDVVGGPMKTIKITTKEDRKTQRKVVDKTTQDQET 83
           VEELVPII+  KD N+V+ E+E++D+DV+GG MKT  IT KED +TQ+KVVDK TQDQE 
Sbjct: 17  VEELVPIIKANKDGNVVNIEDEEEDKDVLGGSMKTTTITAKEDGETQKKVVDKATQDQEK 76

Query: 84  LNVIIVKSLVIMHPNVELLETVDKWSKDKTWYLDTRESNHMCGVKSI------------- 143
               ++ +            T  +W+KD TWYLDT  +N+MCGV+S+             
Sbjct: 77  EFGTLLMAC-----------TNSEWNKDDTWYLDTGANNNMCGVRSMLVELDESMSANVA 136

Query: 144 ----TKVEVKEKG---NIFIRLKNG---EHQLVSNIYYMSNM 162
               +KVEVK +       ++LKN    EH  V  +  +S++
Sbjct: 137 FGDESKVEVKGRAAQEKQGVKLKNSKALEHTNVCELIKLSSL 167

[Close]
BLAST of PI0013046 vs. NCBI nr
Match: KAG7548500.1 (Zinc finger CCHC-type [Arabidopsis suecica])

HSP 1 Score: 88.2 bits (217), Expect = 7.7e-14
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 0 

Query: 106 KWSKDKTWYLDTRESNHMCGVKSI-----------------TKVEVKEKGNIFIRLKNGE 165
           ++ ++  WYLD+  SNHMCG KSI                 +K+EVK KGNI IRLKNG+
Sbjct: 327 EYEENHKWYLDSGASNHMCGSKSIFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGD 386

Query: 166 HQLVSNIYYMSNMKSNILSLSQLLEK 175
           HQ +SN+YY+ +MK+NILSL QLLEK
Sbjct: 387 HQFISNVYYIPSMKTNILSLGQLLEK 412

[Close]
BLAST of PI0013046 vs. NCBI nr
Match: GAU18007.1 (hypothetical protein TSUD_51170 [Trifolium subterraneum])

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-13
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 110 DKTWYLDTRESNHMCGVKSI-----------------TKVEVKEKGNIFIRLKNGEHQLV 169
           D  WYLD+  SNHMCG +S+                 +KV VK KGN+ IRLKNG+HQ +
Sbjct: 331 DNQWYLDSGASNHMCGRRSMFVELDESVNGNVAFGDESKVAVKGKGNVLIRLKNGDHQFI 390

Query: 170 SNIYYMSNMKSNILSLSQLLEK 175
           SN+YY+ NMKSNILSL QLLEK
Sbjct: 391 SNVYYVPNMKSNILSLGQLLEK 412

[Close]
BLAST of PI0013046 vs. NCBI nr
Match: GAU31151.1 (hypothetical protein TSUD_315750 [Trifolium subterraneum])

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-13
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 110 DKTWYLDTRESNHMCGVKSI-----------------TKVEVKEKGNIFIRLKNGEHQLV 169
           D  WYLD+  SNHMCG +S+                 +KV VK KGN+ IR KNG+HQ +
Sbjct: 329 DNQWYLDSGASNHMCGRRSMFVELDESVNENVAFGDESKVAVKGKGNVVIRFKNGDHQFI 388

Query: 170 SNIYYMSNMKSNILSLSQLLEK 175
           SN+YY+SNMKSNILSL QLLEK
Sbjct: 389 SNVYYVSNMKSNILSLGQLLEK 410

[Close]
BLAST of PI0013046 vs. NCBI nr
Match: GAU34810.1 (hypothetical protein TSUD_394360 [Trifolium subterraneum])

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-13
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 110 DKTWYLDTRESNHMCGVKSI-----------------TKVEVKEKGNIFIRLKNGEHQLV 169
           D  WYLD+  SNHMCG +S+                 +KV VK KGN+ IRLKNG+HQ +
Sbjct: 207 DNQWYLDSGASNHMCGRRSMFVELDESVNENVAFGDESKVAVKGKGNVLIRLKNGDHQFI 266

Query: 170 SNIYYMSNMKSNILSLSQLLEK 175
           SN+YY+ NMKSNILSL QLLEK
Sbjct: 267 SNVYYVPNMKSNILSLGQLLEK 288

The following BLAST results are available for this feature:
BLAST of PI0013046 vs.
Match NameE-valueIdentityDescription
BLAST of PI0013046 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DZJ95.2e-1641.36Lectin receptor kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A2Z6MI824.9e-1454.88CCHC-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_51... [more]
A0A2Z6MH944.9e-1454.88CCHC-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_31... [more]
A0A2Z6NEL14.9e-1454.88Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 ... [more]
A0A2Z6M8Q04.9e-1454.88Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_293160 PE=4 SV... [more]
BLAST of PI0013046 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040440.11.1e-1541.36lectin receptor kinase [Cucumis melo var. makuwa] >TYK28888.1 lectin receptor ki... [more]
KAG7548500.17.7e-1452.33Zinc finger CCHC-type [Arabidopsis suecica][more]
GAU18007.11.0e-1354.88hypothetical protein TSUD_51170 [Trifolium subterraneum][more]
GAU31151.11.0e-1354.88hypothetical protein TSUD_315750 [Trifolium subterraneum][more]
GAU34810.11.0e-1354.88hypothetical protein TSUD_394360 [Trifolium subterraneum][more]
BLAST of PI0013046 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0013046.1PI0013046.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process