PI0013005 (gene) Melon (PI 482460) v1

Overview


Name	PI0013005
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr11: 23546479 .. 23547056 (+)
RNA-Seq Expression	PI0013005
Synteny	PI0013005

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATTCGGCAACGCATTTCGTTAATTCTGGAGCAAGGCGAGCTGTGGAAGACGAATTGTATGATAGAGTAGCTCAGCGGATGATTGATGGTTTGGCGAGAGATCCTGAGAAAAAGTTTGGAATAGAGCGTCTGAAGGCATTAGGAGCGCAAGAGTTTTCTGGAACAGTAGACCCTAAGGAAGCGAAGAGTTAGATTAGGACATTGGAGAAGTGTTTTGGGTTATGCAGTGTCCGAAAGAAAGAAGGGTAGATTTGGTTGTCTTCTTGTTGCAAGGAGGAGCTGAAGATTGGTGGACTTTAGAAGAAGGAAGACCAAAAGAAGTTAATTGGTTGAAATTTAAGGAAATATTTAATGATAAATATTTTCCAGAGGCTTTTAGAGATGAAAAGCGGGAGGAATTTTTGAAGTTAAAACAAGGAAATTTATCTATTGTGGAATATGAGAAGAAGTATGCTAATTTGGCAAGGTATGCGTTGGAGATTATTCCGACAGAAAAGGATAAGTGCAAGCGTTTTGAGAGGTTTGAATTTTCGGATTCGGACACCAGTTATTGCATGTGCTGCGTGGAGTAA

mRNA sequence

ATGGATAATTCGGCAACGCATTTCGTTAATTCTGGAGCAAGGCGAGCTGTGGAAGACGAATTGTATGATAGAGTAGCTCAGCGGATGATTGATGGTTTGGCGAGAGATCCTGAGAAAAAGTTTGGAATAGAGCGTCTGAAGGCATTAGGAGCGCAAGAGTTTTCTGGAACAGTAGACCCTAAGGAAGCGAAGAAGGCTTTTAGAGATGAAAAGCGGGAGGAATTTTTGAAGTTAAAACAAGGAAATTTATCTATTGTGGAATATGAGAAGAAGTATGCTAATTTGGCAAGGTATGCGTTGGAGATTATTCCGACAGAAAAGGATAAGTGCAAGCGTTTTGAGAGGTTTGAATTTTCGGATTCGGACACCAGTTATTGCATGTGCTGCGTGGAGTAA

Coding sequence (CDS)

ATGGATAATTCGGCAACGCATTTCGTTAATTCTGGAGCAAGGCGAGCTGTGGAAGACGAATTGTATGATAGAGTAGCTCAGCGGATGATTGATGGTTTGGCGAGAGATCCTGAGAAAAAGTTTGGAATAGAGCGTCTGAAGGCATTAGGAGCGCAAGAGTTTTCTGGAACAGTAGACCCTAAGGAAGCGAAGAAGGCTTTTAGAGATGAAAAGCGGGAGGAATTTTTGAAGTTAAAACAAGGAAATTTATCTATTGTGGAATATGAGAAGAAGTATGCTAATTTGGCAAGGTATGCGTTGGAGATTATTCCGACAGAAAAGGATAAGTGCAAGCGTTTTGAGAGGTTTGAATTTTCGGATTCGGACACCAGTTATTGCATGTGCTGCGTGGAGTAA

Protein sequence

MDNSATHFVNSGARRAVEDELYDRVAQRMIDGLARDPEKKFGIERLKALGAQEFSGTVDPKEAKKAFRDEKREEFLKLKQGNLSIVEYEKKYANLARYALEIIPTEKDKCKRFERFEFSDSDTSYCMCCVE

Homology

[Close]

BLAST of PI0013005 vs. ExPASy TrEMBL
Match: A0A5D3D6F8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00660 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 7   HFVNSGARRAVEDELYDRVAQRMIDGLARDPEKKFGIERLKALGAQEFSGTVDPKEAKKA 66
           H VN  A R +++ L+DRVAQRM+D LA + +KKF IERLKAL A  F GT +P + K  
Sbjct: 6   HLVNQDAMREMKENLFDRVAQRMLDALASNSKKKFNIERLKALRATHFEGTTNPADVK-- 65

Query: 67  FRDEKREEFLKLKQGNLSIVEYEKKYANLARYALEIIPTEKDKCKRFE 115
               + +   +L QGN++I EYEKK+  LA+ A   +  E DKC+ F+
Sbjct: 66  ---SEEQRVYELGQGNMTIAEYEKKFTELAKCASVFLLEETDKCQHFK 108

[Close]

BLAST of PI0013005 vs. ExPASy TrEMBL
Match: A0A5D3C7J1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00290 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.6e-15
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 36  DPEKKFGIERLKALGAQEFSGTVDPKEA-------KKAF------RDEKREEFLKLKQGN 95
           DPEK +GIERLK LGA  F G+ DP +A       +K F       + KR+EFL LKQG+
Sbjct: 331 DPEKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKRDEFLGLKQGS 390

Query: 96  LSIVEYEKKYANLARYALEIIPTEKDKCKRFER 116
           LS+VEYE+KY  L+RYA  I+  E D+C+RFER
Sbjct: 391 LSVVEYERKYTELSRYANVIVAFESDRCRRFER 423

[Close]

BLAST of PI0013005 vs. ExPASy TrEMBL
Match: A0A5A7TI15 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G00260 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.6e-15
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 36  DPEKKFGIERLKALGAQEFSGTVDPKEA-------KKAF------RDEKREEFLKLKQGN 95
           DPEK +GIERLK LGA  F G+ DP +A       +K F       + KR+EFL LKQG+
Sbjct: 331 DPEKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKRDEFLGLKQGS 390

Query: 96  LSIVEYEKKYANLARYALEIIPTEKDKCKRFER 116
           LS+VEYE+KY  L+RYA  I+  E D+C+RFER
Sbjct: 391 LSVVEYERKYTELSRYANVIVAFESDRCRRFER 423

[Close]

BLAST of PI0013005 vs. ExPASy TrEMBL
Match: A0A5D3C867 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold702G00170 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 3   NSATHFVNSGARRAVEDELYDRVAQ---RMIDGLARDPEKKFGIERLKALGAQEFSGTVD 62
           ++ T+   + A    +   Y R AQ   R       DPEK + IERLK LGA  F G+ D
Sbjct: 193 HATTYLQTTQAELGWDAGSYPRSAQENGRPEQARPSDPEKMYEIERLKKLGATVFEGSTD 252

Query: 63  PKEAKK-----AFRDEKREEFLKLKQGNLSIVEYEKKYANLARYALEIIPTEKDKCKRFE 116
             +A++      + + KR+EFL+LKQG+ S+ EYE+KY  L+RYA  I+ +E D C+RFE
Sbjct: 253 LADAEEKYYPTTYCEAKRDEFLELKQGSFSVAEYERKYTELSRYAEMIVASESDMCRRFE 312

[Close]

BLAST of PI0013005 vs. ExPASy TrEMBL
Match: A0A5A7T6M8 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001790 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 3   NSATHFVNSGARRAVEDELYDRVAQ---RMIDGLARDPEKKFGIERLKALGAQEFSGTVD 62
           ++ T+   + A    +   Y R AQ   R       DPEK + IERLK LGA  F G+ D
Sbjct: 342 HATTYLQTTQAELGWDAGSYPRSAQENGRPEQARPSDPEKMYEIERLKKLGATVFEGSTD 401

Query: 63  PKEAKK-----AFRDEKREEFLKLKQGNLSIVEYEKKYANLARYALEIIPTEKDKCKRFE 116
             +A++      + + KR+EFL+LKQG+ S+ EYE+KY  L+RYA  I+ +E D C+RFE
Sbjct: 402 LADAEEKYYPTTYCEAKRDEFLELKQGSFSVAEYERKYTELSRYAEMIVASESDMCRRFE 461

[Close]

BLAST of PI0013005 vs. NCBI nr
Match: KAA0053546.1 (uncharacterized protein E6C27_scaffold190G001120 [Cucumis melo var. makuwa] >TYK19141.1 uncharacterized protein E5676_scaffold522G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-16
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 7   HFVNSGARRAVEDELYDRVAQRMIDGLARDPEKKFGIERLKALGAQEFSGTVDPKEAKKA 66
           H VN  A R +++ L+DRVAQRM+D LA + +KKF IERLKAL A  F GT +P + K  
Sbjct: 6   HLVNQDAMREMKENLFDRVAQRMLDALASNSKKKFNIERLKALRATHFEGTTNPADVK-- 65

Query: 67  FRDEKREEFLKLKQGNLSIVEYEKKYANLARYALEIIPTEKDKCKRFE 115
               + +   +L QGN++I EYEKK+  LA+ A   +  E DKC+ F+
Sbjct: 66  ---SEEQRVYELGQGNMTIAEYEKKFTELAKCASVFLLEETDKCQHFK 108

[Close]

BLAST of PI0013005 vs. NCBI nr
Match: KAA0041696.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-14
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 36  DPEKKFGIERLKALGAQEFSGTVDPKEA-------KKAF------RDEKREEFLKLKQGN 95
           DPEK +GIERLK LGA  F G+ DP +A       +K F       + KR+EFL LKQG+
Sbjct: 331 DPEKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKRDEFLGLKQGS 390

Query: 96  LSIVEYEKKYANLARYALEIIPTEKDKCKRFER 116
           LS+VEYE+KY  L+RYA  I+  E D+C+RFER
Sbjct: 391 LSVVEYERKYTELSRYANVIVAFESDRCRRFER 423

[Close]

BLAST of PI0013005 vs. NCBI nr
Match: TYK06319.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-14
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 36  DPEKKFGIERLKALGAQEFSGTVDPKEA-------KKAF------RDEKREEFLKLKQGN 95
           DPEK +GIERLK LGA  F G+ DP +A       +K F       + KR+EFL LKQG+
Sbjct: 331 DPEKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKRDEFLGLKQGS 390

Query: 96  LSIVEYEKKYANLARYALEIIPTEKDKCKRFER 116
           LS+VEYE+KY  L+RYA  I+  E D+C+RFER
Sbjct: 391 LSVVEYERKYTELSRYANVIVAFESDRCRRFER 423

[Close]

BLAST of PI0013005 vs. NCBI nr
Match: KAA0037251.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 4.9e-13
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 3   NSATHFVNSGARRAVEDELYDRVAQ---RMIDGLARDPEKKFGIERLKALGAQEFSGTVD 62
           ++ T+   + A    +   Y R AQ   R       DPEK + IERLK LGA  F G+ D
Sbjct: 342 HATTYLQTTQAELGWDAGSYPRSAQENGRPEQARPSDPEKMYEIERLKKLGATVFEGSTD 401

Query: 63  PKEAKK-----AFRDEKREEFLKLKQGNLSIVEYEKKYANLARYALEIIPTEKDKCKRFE 116
             +A++      + + KR+EFL+LKQG+ S+ EYE+KY  L+RYA  I+ +E D C+RFE
Sbjct: 402 LADAEEKYYPTTYCEAKRDEFLELKQGSFSVAEYERKYTELSRYAEMIVASESDMCRRFE 461

[Close]

BLAST of PI0013005 vs. NCBI nr
Match: TYK07530.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 4.9e-13
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 3   NSATHFVNSGARRAVEDELYDRVAQ---RMIDGLARDPEKKFGIERLKALGAQEFSGTVD 62
           ++ T+   + A    +   Y R AQ   R       DPEK + IERLK LGA  F G+ D
Sbjct: 193 HATTYLQTTQAELGWDAGSYPRSAQENGRPEQARPSDPEKMYEIERLKKLGATVFEGSTD 252

Query: 63  PKEAKK-----AFRDEKREEFLKLKQGNLSIVEYEKKYANLARYALEIIPTEKDKCKRFE 116
             +A++      + + KR+EFL+LKQG+ S+ EYE+KY  L+RYA  I+ +E D C+RFE
Sbjct: 253 LADAEEKYYPTTYCEAKRDEFLELKQGSFSVAEYERKYTELSRYAEMIVASESDMCRRFE 312

The following BLAST results are available for this feature:

BLAST of PI0013005 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013005 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D6F8	1.3e-16	46.30	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C7J1	5.6e-15	52.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold59...	[more]
A0A5A7TI15	5.6e-15	52.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5D3C867	2.4e-13	41.32	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7T6M8	2.4e-13	41.32	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of PI0013005 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053546.1	2.8e-16	46.30	uncharacterized protein E6C27_scaffold190G001120 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0041696.1	1.2e-14	52.69	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK06319.1	1.2e-14	52.69	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0037251.1	4.9e-13	41.32	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK07530.1	4.9e-13	41.32	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0013005 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013005.1	PI0013005.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0003824	catalytic activity