PI0012901 (gene) Melon (PI 482460) v1

Overview
NamePI0012901
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr10: 14487284 .. 14488068 (-)
RNA-Seq ExpressionPI0012901
SyntenyPI0012901
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTGTTCGGGCTGCCCTCTTACACCGCAACCCTCTACCATCTCTTGACGCCGTCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTAGATCCTCTATGCACTCTGATACTGCCCTTGCAACCACTCATTCACGGCCTACTAATGAGGTCACCTTCTGCAAATATTGTAAACTCCAAGGACACAAGATTGCTAATTGTCCTATCATTAAGTGCAGGTACACACAAGCAAGGTCACATCTTGGAAATCTATCTAACTCGTCCACCGTGCCCTCCTGGTCACTCACACAAACCCAAGTCCTCACCTAATTTGGGTTCCTCATCTGTGGTTGCTGCTGCCACCTCACCTGACACTACATCATCTCCAAGCTTTCAGTTACATGACCTCTATGACTTACTGAAACAGGTGATCTCTTCCAACTCTACTGCCCTTGCTGCCACATCAGGTACTTCCTAGCTCCTTGATTCCGCCTGTTGCAACCATATGACCTCTGACATTTCATTATTGTCCTCCCCTACCCCTGTCCAATCCCTTCCACCAATCCACTCTGCTGATGGTAATCAAATGACTATTTCTCACATTGGAACTGTTCACACACCCACCATCAACCTTTCCCACACTTATCATGTTCCAAATCTAACATTCAACCTAGCCTCTATTGGCCAATTATGTGACCTTGGACTTAACATTATCTTTTCCTCTAATGGTTGTCAGGTTCAGGATCCTCAGACGGGCCACGTGATTGGTACGGGACGAAAGGTGGGACGATTATTTGA

mRNA sequence

ATGAATTTGTTCGGGCTGCCCTCTTACACCGCAACCCTCTACCATCTCTTGACGCCGTCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTAGATCCTCTATGCACTCTGATACTGCCCTTGCAACCACTCATTCACGGCCTACTAATGAGGTCACCTTCTGCAAATATTGTAAACTCCAAGGACACAAGATTGCTAATTGTCCTATCATTAAGTGCAGGTACACACAAGCAAGGTCACATCTTGGAAATCTATCTAACTCGTCCACCGTGCCCTCCTGGTCACTCACACAAACCCAAGTCCTCACCTAATTTGGGTTCCTCATCTGTGGTTGCTGCTGCCACCTCACCTGACACTACATCATCTCCAAGCTTTCAGTTACATGACCTCTATGACTTACTGAAACAGGTGATCTCTTCCAACTCTACTGCCCTTGCTGCCACATCAGGTTCAGGATCCTCAGACGGGCCACGTGATTGGTACGGGACGAAAGGTGGGACGATTATTTGA

Coding sequence (CDS)

ATGAATTTGTTCGGGCTGCCCTCTTACACCGCAACCCTCTACCATCTCTTGACGCCGTCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTAGATCCTCTATGCACTCTGATACTGCCCTTGCAACCACTCATTCACGGCCTACTAATGAGGTCACCTTCTGCAAATATTGTAAACTCCAAGGACACAAGATTGCTAATTGTCCTATCATTAAGTGCAGGTACACACAAGCAAGGTCACATCTTGGAAATCTATCTAACTCGTCCACCGTGCCCTCCTGGTCACTCACACAAACCCAAGTCCTCACCTAATTTGGGTTCCTCATCTGTGGTTGCTGCTGCCACCTCACCTGACACTACATCATCTCCAAGCTTTCAGTTACATGACCTCTATGACTTACTGAAACAGGTGATCTCTTCCAACTCTACTGCCCTTGCTGCCACATCAGGTTCAGGATCCTCAGACGGGCCACGTGATTGGTACGGGACGAAAGGTGGGACGATTATTTGA

Protein sequence

MNLFGLPSYTATLYHLLTPSFRKSYLRRKDLALDPLCTLILPLQPLIHGLLMRSPSANIVNSKDTRLLIVLSLSAGTHKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVISSNSTALAATSGSGSSDGPRDWYGTKGGTII
Homology
BLAST of PI0012901 vs. ExPASy TrEMBL
Match: A0A1S3BBA1 (uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-25
Identity = 67/94 (71.28%), Postives = 73/94 (77.66%), Query Frame = 0

Query: 78  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLK 137
           HK+GHIL+   TRPP PPGHSHKPK S   GSSSVVAAATS D T   S QL DL+DLLK
Sbjct: 249 HKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSSDITEPSSLQLTDLHDLLK 308

Query: 138 QVISSNSTALAATSGSGSSDGPRDWYGTKGGTII 172
           QVISS STALA T GSG SDG  DW+GT+GG+II
Sbjct: 309 QVISSQSTALAVTPGSGFSDGTSDWHGTEGGSII 342

BLAST of PI0012901 vs. ExPASy TrEMBL
Match: A0A5A7UL86 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00270 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.8e-20
Identity = 67/130 (51.54%), Postives = 77/130 (59.23%), Query Frame = 0

Query: 22  RKSYLRRKDLALDPLCTLILPLQPLIHGLLMRSPSANIVNSKDTRLLIVLSLSAG-THKQ 81
           +K YLRRKDLAL PLC L+ PLQ LI  +   S           +     ++     HK+
Sbjct: 100 KKFYLRRKDLALSPLCPLMSPLQLLISDITEPSSLTKNCKLHGHKFANCPTIECRYCHKR 159

Query: 82  GHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVI 141
           GH L+   T PP P GHSHKPK S  +GSSSVV A TS D T   S QL DL+DLLKQVI
Sbjct: 160 GHTLDNCPTHPPRPSGHSHKPKFSHKVGSSSVVVATTSSDITEPSSLQLTDLHDLLKQVI 219

Query: 142 SSNSTALAAT 151
            S STALA T
Sbjct: 220 FSQSTALAVT 229

BLAST of PI0012901 vs. ExPASy TrEMBL
Match: A0A5D3DX62 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00200 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 7.5e-20
Identity = 67/130 (51.54%), Postives = 77/130 (59.23%), Query Frame = 0

Query: 22  RKSYLRRKDLALDPLCTLILPLQPLIHGLLMRSPSANIVNSKDTRLLIVLSLSAG-THKQ 81
           +K YLRRKDLAL PLC L+ PLQ LI  +   S           +     ++     HK+
Sbjct: 100 KKFYLRRKDLALSPLCPLMSPLQLLISDITEPSSLTKNCKLHGHKFANCPTIECRYCHKR 159

Query: 82  GHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVI 141
           GH L+   T PP P GHSHKPK S  +GSSSVV A TS D T   S QL DL+DLLKQVI
Sbjct: 160 GHTLDNCPTHPPRPSGHSHKPKFSHKVGSSSVVIATTSSDITEPSSLQLTDLHDLLKQVI 219

Query: 142 SSNSTALAAT 151
            S STALA T
Sbjct: 220 FSQSTALAVT 229

BLAST of PI0012901 vs. ExPASy TrEMBL
Match: A0A5A7UKE6 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00500 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-18
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 78  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLK 137
           HK+GHIL+   TRPP PPGHSHKPK SP  G+SSVVAAAT  D T+  +FQL DL+DLLK
Sbjct: 265 HKRGHILDHCPTRPPRPPGHSHKPKFSPKAGTSSVVAAATPSDITAPSTFQLTDLHDLLK 324

Query: 138 QVISSNSTALAATSGS 154
           QVISSNSTALA T G+
Sbjct: 325 QVISSNSTALAVTLGT 340

BLAST of PI0012901 vs. ExPASy TrEMBL
Match: A0A5A7TGJ6 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00960 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.7e-17
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 0

Query: 78  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLK 137
           HK+GHIL+   TRPP PPGHSHKPK S   GSSSVVAAATS D T   S QL DL+DLLK
Sbjct: 85  HKRGHILDTCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSFDITEPSSLQLTDLHDLLK 144

Query: 138 QVISSNSTALAATSGS 154
           QVISS STALA T G+
Sbjct: 145 QVISSQSTALAVTPGT 160

BLAST of PI0012901 vs. NCBI nr
Match: XP_008445037.1 (PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 4.2e-25
Identity = 67/94 (71.28%), Postives = 73/94 (77.66%), Query Frame = 0

Query: 78  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLK 137
           HK+GHIL+   TRPP PPGHSHKPK S   GSSSVVAAATS D T   S QL DL+DLLK
Sbjct: 249 HKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVVAAATSSDITEPSSLQLTDLHDLLK 308

Query: 138 QVISSNSTALAATSGSGSSDGPRDWYGTKGGTII 172
           QVISS STALA T GSG SDG  DW+GT+GG+II
Sbjct: 309 QVISSQSTALAVTPGSGFSDGTSDWHGTEGGSII 342

BLAST of PI0012901 vs. NCBI nr
Match: XP_031739694.1 (uncharacterized protein LOC105434738 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 6.8e-23
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 0

Query: 78  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLK 137
           HK+GHIL+   TRPP PPG  +KPKSS    S  +VAAAT  D T+  +FQL+DL+DLLK
Sbjct: 266 HKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPIVAAATPSDITTPQNFQLNDLHDLLK 325

Query: 138 QVISSNSTALAATSGSGSSDGPRDWYGTKGGTII 172
           QVISSNSTALA T GSG S+G  DWYGT+GGTII
Sbjct: 326 QVISSNSTALAVTPGSGFSNGASDWYGTEGGTII 359

BLAST of PI0012901 vs. NCBI nr
Match: KAA0055910.1 (Copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-19
Identity = 67/130 (51.54%), Postives = 77/130 (59.23%), Query Frame = 0

Query: 22  RKSYLRRKDLALDPLCTLILPLQPLIHGLLMRSPSANIVNSKDTRLLIVLSLSAG-THKQ 81
           +K YLRRKDLAL PLC L+ PLQ LI  +   S           +     ++     HK+
Sbjct: 100 KKFYLRRKDLALSPLCPLMSPLQLLISDITEPSSLTKNCKLHGHKFANCPTIECRYCHKR 159

Query: 82  GHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVI 141
           GH L+   T PP P GHSHKPK S  +GSSSVV A TS D T   S QL DL+DLLKQVI
Sbjct: 160 GHTLDNCPTHPPRPSGHSHKPKFSHKVGSSSVVVATTSSDITEPSSLQLTDLHDLLKQVI 219

Query: 142 SSNSTALAAT 151
            S STALA T
Sbjct: 220 FSQSTALAVT 229

BLAST of PI0012901 vs. NCBI nr
Match: TYK28114.1 (Copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-19
Identity = 67/130 (51.54%), Postives = 77/130 (59.23%), Query Frame = 0

Query: 22  RKSYLRRKDLALDPLCTLILPLQPLIHGLLMRSPSANIVNSKDTRLLIVLSLSAG-THKQ 81
           +K YLRRKDLAL PLC L+ PLQ LI  +   S           +     ++     HK+
Sbjct: 100 KKFYLRRKDLALSPLCPLMSPLQLLISDITEPSSLTKNCKLHGHKFANCPTIECRYCHKR 159

Query: 82  GHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLKQVI 141
           GH L+   T PP P GHSHKPK S  +GSSSVV A TS D T   S QL DL+DLLKQVI
Sbjct: 160 GHTLDNCPTHPPRPSGHSHKPKFSHKVGSSSVVIATTSSDITEPSSLQLTDLHDLLKQVI 219

Query: 142 SSNSTALAAT 151
            S STALA T
Sbjct: 220 FSQSTALAVT 229

BLAST of PI0012901 vs. NCBI nr
Match: KAA0053979.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK20664.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-18
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 78  HKQGHILEIYLTRPPCPPGHSHKPKSSPNLGSSSVVAAATSPDTTSSPSFQLHDLYDLLK 137
           HK+GHIL+   TRPP PPGHSHKPK SP  G+SSVVAAAT  D T+  +FQL DL+DLLK
Sbjct: 265 HKRGHILDHCPTRPPRPPGHSHKPKFSPKAGTSSVVAAATPSDITAPSTFQLTDLHDLLK 324

Query: 138 QVISSNSTALAATSGS 154
           QVISSNSTALA T G+
Sbjct: 325 QVISSNSTALAVTLGT 340

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BBA12.1e-2571.28uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=... [more]
A0A5A7UL865.8e-2051.54Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00270 ... [more]
A0A5D3DX627.5e-2051.54Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00200 ... [more]
A0A5A7UKE61.4e-1871.05Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7TGJ62.7e-1771.05Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
Match NameE-valueIdentityDescription
XP_008445037.14.2e-2571.28PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo][more]
XP_031739694.16.8e-2365.96uncharacterized protein LOC105434738 [Cucumis sativus][more]
KAA0055910.11.2e-1951.54Copia protein [Cucumis melo var. makuwa][more]
TYK28114.11.6e-1951.54Copia protein [Cucumis melo var. makuwa][more]
KAA0053979.12.9e-1871.05Integrase, catalytic core [Cucumis melo var. makuwa] >TYK20664.1 Integrase, cata... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012901.1PI0012901.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding