PI0012870 (gene) Melon (PI 482460) v1

Overview
NamePI0012870
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr08: 20624153 .. 20624426 (-)
RNA-Seq ExpressionPI0012870
SyntenyPI0012870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTATCACAGATTCGGTGGCGTTTATGGATGTAGAGTAGTTGGTTTTCTCCATCCAAGAGTTAGGAATGGTATTTTCTTTCCATTTGCTTTAATTTCCTCAGAATGTTGTATAAGTAAGAGTTTCAGGCTGTAAGGAGGAGAGTGGTAGTGGCTAGTGAGCCCCAAGTATGCCTCTTCAGGACCTCCGATGTACTTATAATTAGGGTTGTACAGGGAATGAATGACGCAGATGCACTGAAGCTGAGAAATGGTCCACAAAAACGCTGA

mRNA sequence

ATGTCTTCTATCACAGATTCGGTGGCGTTTATGGATGCTGTAAGGAGGAGAGTGGTAGTGGCTAGTGAGCCCCAAGTATGCCTCTTCAGGACCTCCGATGTACTTATAATTAGGGTTGTACAGGGAATGAATGACGCAGATGCACTGAAGCTGAGAAATGGTCCACAAAAACGCTGA

Coding sequence (CDS)

ATGTCTTCTATCACAGATTCGGTGGCGTTTATGGATGCTGTAAGGAGGAGAGTGGTAGTGGCTAGTGAGCCCCAAGTATGCCTCTTCAGGACCTCCGATGTACTTATAATTAGGGTTGTACAGGGAATGAATGACGCAGATGCACTGAAGCTGAGAAATGGTCCACAAAAACGCTGA

Protein sequence

MSSITDSVAFMDAVRRRVVVASEPQVCLFRTSDVLIIRVVQGMNDADALKLRNGPQKR
Homology
[Close]
BLAST of PI0012870 vs. ExPASy TrEMBL
Match: A0A0A0KJU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497130 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.9e-17
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 2  SSITDSVAFMDAVRRRVVVASEPQVCLFRTSDVLIIRVVQGMNDADALKLRNGPQKR 59
          S+ITD VAF+DAV RRVVVASEPQ CLFRTSDVLIIRVVQGMNDAD+LKLRNGPQKR
Sbjct: 12 SAITDLVAFVDAV-RRVVVASEPQECLFRTSDVLIIRVVQGMNDADSLKLRNGPQKR 67

[Close]
BLAST of PI0012870 vs. NCBI nr
Match: KGN48662.1 (hypothetical protein Csa_004196 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 2  SSITDSVAFMDAVRRRVVVASEPQVCLFRTSDVLIIRVVQGMNDADALKLRNGPQKR 59
          S+ITD VAF+DAV RRVVVASEPQ CLFRTSDVLIIRVVQGMNDAD+LKLRNGPQKR
Sbjct: 12 SAITDLVAFVDAV-RRVVVASEPQECLFRTSDVLIIRVVQGMNDADSLKLRNGPQKR 67

The following BLAST results are available for this feature:
BLAST of PI0012870 vs.
Match NameE-valueIdentityDescription
BLAST of PI0012870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJU05.9e-1789.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497130 PE=4 SV=1[more]
BLAST of PI0012870 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48662.11.2e-1689.47hypothetical protein Csa_004196 [Cucumis sativus][more]
BLAST of PI0012870 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012870.1PI0012870.1mRNA