PI0012770 (gene) Melon (PI 482460) v1

Overview


Name	PI0012770
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr01: 19913258 .. 19913719 (+)
RNA-Seq Expression	PI0012770
Synteny	PI0012770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTGGTTTGACTAACGCTCCTGCTGTATTCATGGATCTGATGAACAGGGTGTTCAAGGAATTCCTGGACTCATTTGTGATTGTGTTCATTGATGACATCTTAGTCTACTCCAAGACGGAGGCCGAACATGAGGATCATTTGCATAAGGTCTTGGAGACACTTCAAGTGAACCAGTTGTTTGCTAAGTTCTCGAAGTGCGAGTTTTGGTTGAGGCAGGTATCCTTCCTAGGCCATGTGGTGTCCAAGGACGGTGTTTCAGTGGATCCAGCTAAGATTGAAGCGGTCACCAACTGGTCTGTACCTTCCTCAGTTAGCGAGGTTCGTAGTTTTCTGGGTCTTGCAAGTTATTATCGTAGGTTTGTGGAGGATTTCTCCCGCATTGCTTCTCCGTTGACCCAGTTGACTAGAAAAGGGACTCCATTTGTGTGGAGTAAGGCTTGTGATGACAGTTTCTAG

mRNA sequence

ATGTCTTTTGGTTTGACTAACGCTCCTGCTGTATTCATGGATCTGATGAACAGGGTGTTCAAGGAATTCCTGGACTCATTTGTGATTGTGTTCATTGATGACATCTTAGTCTACTCCAAGACGGAGGCCGAACATGAGGATCATTTGCATAAGGTCTTGGAGACACTTCAAGTGAACCAGTTGTTTGCTAAGTTCTCGAAGTGCGAGTTTTGGTTGAGGCAGGTATCCTTCCTAGGCCATGTGGTGTCCAAGGACGGTGTTTCAGTGGATCCAGCTAAGATTGAAGCGGTCACCAACTGGTCTGTACCTTCCTCAGTTAGCGAGGTTCGTAGTTTTCTGGGTCTTGCAAGTTATTATCGTAGGTTTGTGGAGGATTTCTCCCGCATTGCTTCTCCGTTGACCCAGTTGACTAGAAAAGGGACTCCATTTGTGTGGAGTAAGGCTTGTGATGACAGTTTCTAG

Coding sequence (CDS)

ATGTCTTTTGGTTTGACTAACGCTCCTGCTGTATTCATGGATCTGATGAACAGGGTGTTCAAGGAATTCCTGGACTCATTTGTGATTGTGTTCATTGATGACATCTTAGTCTACTCCAAGACGGAGGCCGAACATGAGGATCATTTGCATAAGGTCTTGGAGACACTTCAAGTGAACCAGTTGTTTGCTAAGTTCTCGAAGTGCGAGTTTTGGTTGAGGCAGGTATCCTTCCTAGGCCATGTGGTGTCCAAGGACGGTGTTTCAGTGGATCCAGCTAAGATTGAAGCGGTCACCAACTGGTCTGTACCTTCCTCAGTTAGCGAGGTTCGTAGTTTTCTGGGTCTTGCAAGTTATTATCGTAGGTTTGTGGAGGATTTCTCCCGCATTGCTTCTCCGTTGACCCAGTTGACTAGAAAAGGGACTCCATTTGTGTGGAGTAAGGCTTGTGATGACAGTTTCTAG

Protein sequence

MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQLFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFVWSKACDDSF

Homology

[Close]

BLAST of PI0012770 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.2e-27
Identity = 57/139 (41.01%), Postives = 88/139 (63.31%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
           M FGL NAPA F   MN + +  L+   +V++DDI+V+S +  EH   L  V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
           L  +  KCEF  ++ +FLGHV++ DG+  +P KIEA+  + +P+   E+++FLGL  YYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEDFSRIASPLTQLTRK 140
           +F+ +F+ IA P+T+  +K
Sbjct: 454 KFIPNFADIAKPMTKCLKK 472

[Close]

BLAST of PI0012770 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.5e-27
Identity = 53/141 (37.59%), Postives = 89/141 (63.12%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
           M FGL NAPA F   MN + +  L+   +V++DDI+++S +  EH + +  V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
           L  +  KCEF  ++ +FLGH+V+ DG+  +P K++A+ ++ +P+   E+R+FLGL  YYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEDFSRIASPLTQLTRKGT 142
           +F+ +++ IA P+T   +K T
Sbjct: 453 KFIPNYADIAKPMTSCLKKRT 473

[Close]

BLAST of PI0012770 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.4e-27
Identity = 56/138 (40.58%), Postives = 88/138 (63.77%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
           + FGL NAPA+F  +++ + +E +     V+IDDI+V+S+    H  +L  VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
           L     K  F   QV FLG++V+ DG+  DP K+ A++    P+SV E++ FLG+ SYYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVEDFSRIASPLTQLTR 139
           +F++D++++A PLT LTR
Sbjct: 370 KFIQDYAKVAKPLTNLTR 387

[Close]

BLAST of PI0012770 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-24
Identity = 53/138 (38.41%), Postives = 86/138 (62.32%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
           + FGL NA ++F   ++ V +E +     V++DD++++S+ E++H  H+  VL+ L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
           +     K  F+   V +LG +VSKDG   DP K++A+  +  P  V +VRSFLGLASYYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFVEDFSRIASPLTQLTR 139
            F++DF+ IA P+T + +
Sbjct: 429 VFIKDFAAIARPITDILK 446

[Close]

BLAST of PI0012770 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.3e-23
Identity = 52/146 (35.62%), Postives = 85/146 (58.22%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
           M +G++ APA F   +N +  E  +S V+ ++DDIL++SK+E+EH  H+  VL+ L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
           L    +KCEF   QV F+G+ +S+ G +     I+ V  W  P +  E+R FLG  +Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWS 147
           +F+   S++  PL  L +K   + W+
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWT 679

[Close]

BLAST of PI0012770 vs. ExPASy TrEMBL
Match: A0A5D3CQB5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001420 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.6e-72
Identity = 134/153 (87.58%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
           MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDIL+YSKTEAEHE+HLH+VLETL+ N+
Sbjct: 727 MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 786

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
           L+AKFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+ PS+VSE+RSFLGLA YYR
Sbjct: 787 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 846

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSKACDDSF 154
           RFVEDFSRIASPLTQLTRKGTPFVWS AC+ SF
Sbjct: 847 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 879

[Close]

BLAST of PI0012770 vs. ExPASy TrEMBL
Match: A0A5A7UBS1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00110 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.6e-72
Identity = 134/153 (87.58%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
           MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDIL+YSKTEAEHE+HLH+VLETL+ N+
Sbjct: 727 MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 786

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
           L+AKFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+ PS+VSE+RSFLGLA YYR
Sbjct: 787 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 846

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSKACDDSF 154
           RFVEDFSRIASPLTQLTRKGTPFVWS AC+ SF
Sbjct: 847 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 879

[Close]

BLAST of PI0012770 vs. ExPASy TrEMBL
Match: A0A5A7TEQ2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00410 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.6e-72
Identity = 134/153 (87.58%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
           MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDIL+YSKTEAEHE+HLH+VLETL+ N+
Sbjct: 727 MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 786

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
           L+AKFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+ PS+VSE+RSFLGLA YYR
Sbjct: 787 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 846

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSKACDDSF 154
           RFVEDFSRIASPLTQLTRKGTPFVWS AC+ SF
Sbjct: 847 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 879

[Close]

BLAST of PI0012770 vs. ExPASy TrEMBL
Match: A0A5A7TSL0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001340 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.6e-72
Identity = 134/153 (87.58%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
           MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDIL+YSKTEAEHE+HLH+VLETL+ N+
Sbjct: 727 MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 786

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
           L+AKFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+ PS+VSE+RSFLGLA YYR
Sbjct: 787 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 846

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSKACDDSF 154
           RFVEDFSRIASPLTQLTRKGTPFVWS AC+ SF
Sbjct: 847 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 879

[Close]

BLAST of PI0012770 vs. ExPASy TrEMBL
Match: A0A5D3DY07 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00520 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.6e-72
Identity = 134/153 (87.58%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
            MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDIL+YSKTEAEHE+HLH+VLETL+ N+
Sbjct: 1078 MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 1137

Query: 61   LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
            L+AKFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+ PS+VSE+RSFLGLA YYR
Sbjct: 1138 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 1197

Query: 121  RFVEDFSRIASPLTQLTRKGTPFVWSKACDDSF 154
            RFVEDFSRIASPLTQLTRKGTPFVWS AC+ SF
Sbjct: 1198 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 1230

[Close]

BLAST of PI0012770 vs. NCBI nr
Match: KAA0031437.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.6e-71
Identity = 134/153 (87.58%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
           MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDIL+YSKTEAEHE+HLH+VLETL+ N+
Sbjct: 668 MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 727

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
           L+AKFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+ PS+VSE+RSFLGLA YYR
Sbjct: 728 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 787

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSKACDDSF 154
           RFVEDFSRIASPLTQLTRKGTPFVWS AC+ SF
Sbjct: 788 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 820

[Close]

BLAST of PI0012770 vs. NCBI nr
Match: KAA0033825.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.6e-71
Identity = 134/153 (87.58%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
            MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDIL+YSKTEAEHE+HLH+VLETL+ N+
Sbjct: 1332 MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 1391

Query: 61   LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
            L+AKFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+ PS+VSE+RSFLGLA YYR
Sbjct: 1392 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 1451

Query: 121  RFVEDFSRIASPLTQLTRKGTPFVWSKACDDSF 154
            RFVEDFSRIASPLTQLTRKGTPFVWS AC+ SF
Sbjct: 1452 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 1484

[Close]

BLAST of PI0012770 vs. NCBI nr
Match: KAA0025848.1 (pol protein [Cucumis melo var. makuwa] >KAA0035212.1 pol protein [Cucumis melo var. makuwa] >KAA0036593.1 pol protein [Cucumis melo var. makuwa] >KAA0036739.1 pol protein [Cucumis melo var. makuwa] >KAA0037408.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.6e-71
Identity = 134/153 (87.58%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
           MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDIL+YSKTEAEHE+HLH+VLETL+ N+
Sbjct: 727 MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 786

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
           L+AKFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+ PS+VSE+RSFLGLA YYR
Sbjct: 787 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 846

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSKACDDSF 154
           RFVEDFSRIASPLTQLTRKGTPFVWS AC+ SF
Sbjct: 847 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 879

[Close]

BLAST of PI0012770 vs. NCBI nr
Match: TYK28422.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.6e-71
Identity = 134/153 (87.58%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
            MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDIL+YSKTEAEHE+HLH+VLETL+ N+
Sbjct: 1078 MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 1137

Query: 61   LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
            L+AKFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+ PS+VSE+RSFLGLA YYR
Sbjct: 1138 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 1197

Query: 121  RFVEDFSRIASPLTQLTRKGTPFVWSKACDDSF 154
            RFVEDFSRIASPLTQLTRKGTPFVWS AC+ SF
Sbjct: 1198 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 1230

[Close]

BLAST of PI0012770 vs. NCBI nr
Match: TYK28368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.6e-71
Identity = 134/153 (87.58%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILVYSKTEAEHEDHLHKVLETLQVNQ 60
            MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDIL+YSKTEAEHE+HLH+VLETL+ N+
Sbjct: 1066 MSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 1125

Query: 61   LFAKFSKCEFWLRQVSFLGHVVSKDGVSVDPAKIEAVTNWSVPSSVSEVRSFLGLASYYR 120
            L+AKFSKCEFWLR+V+FLGHVVS +GVSVDPAKIEAVTNW+ PS+VSE+RSFLGLA YYR
Sbjct: 1126 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYR 1185

Query: 121  RFVEDFSRIASPLTQLTRKGTPFVWSKACDDSF 154
            RFVEDFSRIASPLTQLTRKGTPFVWS AC+ SF
Sbjct: 1186 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 1218

[Close]

BLAST of PI0012770 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 2.3e-20
Identity = 43/97 (44.33%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 47  DHLHKVLETLQVNQLFAKFSKCEFWLRQVSFLG--HVVSKDGVSVDPAKIEAVTNWSVPS 106
           +HL  VL+  + +Q +A   KC F   Q+++LG  H++S +GVS DPAK+EA+  W  P 
Sbjct: 2   NHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPK 61

Query: 107 SVSEVRSFLGLASYYRRFVEDFSRIASPLTQLTRKGT 142
           + +E+R FLGL  YYRRFV+++ +I  PLT+L +K +
Sbjct: 62  NTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS 98

The following BLAST results are available for this feature:

BLAST of PI0012770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	3.2e-27	41.01	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	5.5e-27	37.59	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	9.4e-27	40.58	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	1.5e-24	38.41	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	6.3e-23	35.62	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of PI0012770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQB5	7.6e-72	87.58	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UBS1	7.6e-72	87.58	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7TEQ2	7.6e-72	87.58	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19...	[more]
A0A5A7TSL0	7.6e-72	87.58	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19...	[more]
A0A5D3DY07	7.6e-72	87.58	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold62...	[more]

BLAST of PI0012770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031437.1	1.6e-71	87.58	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033825.1	1.6e-71	87.58	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025848.1	1.6e-71	87.58	pol protein [Cucumis melo var. makuwa] >KAA0035212.1 pol protein [Cucumis melo v...	[more]
TYK28422.1	1.6e-71	87.58	pol protein [Cucumis melo var. makuwa]	[more]
TYK28368.1	1.6e-71	87.58	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0012770 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.3e-20	44.33	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..153 e-value: 5.0E-23 score: 82.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..88 e-value: 2.2E-33 score: 117.0
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 9.2E-15 score: 54.8
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 8.711625
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..151
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..151
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 1.68826E-38 score: 126.941
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012770.1	PI0012770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:1901800	positive regulation of proteasomal protein catabolic process
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000502	proteasome complex
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0036402	proteasome-activating activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008194	UDP-glycosyltransferase activity
molecular_function	GO:0008270	zinc ion binding