PI0012571 (gene) Melon (PI 482460) v1

Overview


Name	PI0012571
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Drebrin-like
Location	chr04: 22191337 .. 22191651 (+)
RNA-Seq Expression	PI0012571
Synteny	PI0012571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCAGGCCATGACAGTACTATCGCATTGGACAAAGCGATGCTCTTCTACTGCATTATGGAGGAAATACGCATCAACCTTGGCGAGATAGTTTGTCAACAGATCCATGCGTTTGTGAAGCATCCACGCGGCGCAAGACCCTTCCCATACTTAATAGAACAGTTATATTTGAAGGCAGTCCCTGCGTTGAAGACTTTCCCTGCGATCCCCATCAAAGATGGCTTGTGTTCCATTACAAGCCTTAAACGCATCATCAACCTCCACAAGAACAACGCTGAAGCAAGACGCCTCAAATTCGCAAAAGGTGGATGA

mRNA sequence

ATGCCATCAGGCCATGACAGTACTATCGCATTGGACAAAGCGATGCTCTTCTACTGCATTATGGAGGAAATACGCATCAACCTTGGCGAGATAGTTTGTCAACAGATCCATGCGTTTGTGAAGCATCCACGCGGCGCAAGACCCTTCCCATACTTAATAGAACAGTTATATTTGAAGGCAGTCCCTGCGTTGAAGACTTTCCCTGCGATCCCCATCAAAGATGGCTTGTGTTCCATTACAAGCCTTAAACGCATCATCAACCTCCACAAGAACAACGCTGAAGCAAGACGCCTCAAATTCGCAAAAGGTGGATGA

Coding sequence (CDS)

ATGCCATCAGGCCATGACAGTACTATCGCATTGGACAAAGCGATGCTCTTCTACTGCATTATGGAGGAAATACGCATCAACCTTGGCGAGATAGTTTGTCAACAGATCCATGCGTTTGTGAAGCATCCACGCGGCGCAAGACCCTTCCCATACTTAATAGAACAGTTATATTTGAAGGCAGTCCCTGCGTTGAAGACTTTCCCTGCGATCCCCATCAAAGATGGCTTGTGTTCCATTACAAGCCTTAAACGCATCATCAACCTCCACAAGAACAACGCTGAAGCAAGACGCCTCAAATTCGCAAAAGGTGGATGA

Protein sequence

MPSGHDSTIALDKAMLFYCIMEEIRINLGEIVCQQIHAFVKHPRGARPFPYLIEQLYLKAVPALKTFPAIPIKDGLCSITSLKRIINLHKNNAEARRLKFAKGG

Homology

[Close]

BLAST of PI0012571 vs. ExPASy TrEMBL
Match: A0A5A7SRQ1 (Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00660 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.8e-23
Identity = 50/99 (50.51%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 1   MPSGHDSTIALDKAMLFYCIMEEIRINLGEIVCQQIHAFVKHPRGARPFPYLIEQLYLKA 60
           MP+ HD+TI++DK +L YCIMEE+ +N+GEI+C+ I A+VKHP+G+RPFP+LIE+L LKA
Sbjct: 1   MPTRHDNTISMDKIVLIYCIMEELPVNVGEIICEHIFAWVKHPQGSRPFPHLIEKLCLKA 60

Query: 61  VPALKTFPAIPIKDGLCSITSLKRIINLHKNNAEARRLK 100
            P+L+  P + +KD + + ++L   I +HKN +  + LK
Sbjct: 61  CPSLEKLPQVEVKDRVYTASTLYCFIAIHKNKSRLKHLK 99

[Close]

BLAST of PI0012571 vs. ExPASy TrEMBL
Match: A0A5A7VJ48 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G004490 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.9e-23
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   MPSGHDSTIALDKAMLFYCIMEEIRINLGEIVCQQIHAFVKHPRGARPFPYLIEQLYLKA 60
           M +  +S +++D+ ML YCIMEE+++NLGEI+C+ I   VKHP GAR FP+LIE+L LK 
Sbjct: 98  MRTRQESIVSMDRMMLIYCIMEELQVNLGEIICEHILECVKHPYGARSFPHLIEKLCLKT 157

Query: 61  VPALKTFPAIPIKDGLCSITSLKRIINLHKNNAEARRLKFAKGG 105
             AL+  P + +KDG+C+  +L RII +HKN A  +RLK  K G
Sbjct: 158 CLALEKLPQVEVKDGMCTTITLPRIIAIHKNKARLKRLKTKKEG 201

[Close]

BLAST of PI0012571 vs. ExPASy TrEMBL
Match: A0A5D3BPB1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00710 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.9e-23
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   MPSGHDSTIALDKAMLFYCIMEEIRINLGEIVCQQIHAFVKHPRGARPFPYLIEQLYLKA 60
           M +  +S +++D+ ML YCIMEE+++NLGEI+C+ I   VKHP GAR FP+LIE+L LK 
Sbjct: 1   MRTRQESIVSMDRMMLIYCIMEELQVNLGEIICEHILECVKHPYGARSFPHLIEKLCLKT 60

Query: 61  VPALKTFPAIPIKDGLCSITSLKRIINLHKNNAEARRLKFAKGG 105
             AL+  P + +KDG+C+  +L RII +HKN A  +RLK  K G
Sbjct: 61  CLALEKLPQVEVKDGMCTTITLPRIIAIHKNKARLKRLKTKKEG 104

[Close]

BLAST of PI0012571 vs. ExPASy TrEMBL
Match: A0A0A0LAN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.1e-21
Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 1   MPSGHDSTIALDKAMLFYCIMEEIRINLGEIVCQQIHAFVKHPRGARPFPYLIEQLYLKA 60
           MP+ H STI++++ ML YCIM++I +N+G+I+   I A VKHPRGARPF YLIEQL L+A
Sbjct: 38  MPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFSYLIEQLCLRA 97

Query: 61  VPALKTFPAIPIKDGLCSITSLKRIINLHKNNAEARRLKFAKG 104
              L+  P + +KDG+   ++L RII +HKN A+ + LK  +G
Sbjct: 98  CLMLEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKEG 140

[Close]

BLAST of PI0012571 vs. ExPASy TrEMBL
Match: A0A5D3C0C3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76994G00060 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 50/99 (50.51%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 1   MPSGHDSTIALDKAMLFYCIMEEIRINLGEIVCQQIHAFVKHPRGARPFPYLIEQLYLKA 60
           MP+  D+ I++DK +L YC +EEI +N+G+I+C+ I A+V+HP  ARP P LIEQ++LKA
Sbjct: 1   MPTHQDNMISMDKTILLYCNIEEILVNVGKIICEHIQAWVRHPHDARPLPNLIEQIFLKA 60

Query: 61  VPALKTFPAIPIKDGLCSITSLKRIINLHKNNAEARRLK 100
             ALK      +KD +C+ITS+  +INL+KN AE + LK
Sbjct: 61  CFALKNLLKTMVKDEICTITSVSHMINLNKNKAEDKCLK 99

[Close]

BLAST of PI0012571 vs. NCBI nr
Match: KAA0032726.1 (drebrin-like [Cucumis melo var. makuwa] >TYJ98758.1 drebrin-like [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-22
Identity = 50/99 (50.51%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 1   MPSGHDSTIALDKAMLFYCIMEEIRINLGEIVCQQIHAFVKHPRGARPFPYLIEQLYLKA 60
           MP+ HD+TI++DK +L YCIMEE+ +N+GEI+C+ I A+VKHP+G+RPFP+LIE+L LKA
Sbjct: 1   MPTRHDNTISMDKIVLIYCIMEELPVNVGEIICEHIFAWVKHPQGSRPFPHLIEKLCLKA 60

Query: 61  VPALKTFPAIPIKDGLCSITSLKRIINLHKNNAEARRLK 100
            P+L+  P + +KD + + ++L   I +HKN +  + LK
Sbjct: 61  CPSLEKLPQVEVKDRVYTASTLYCFIAIHKNKSRLKHLK 99

[Close]

BLAST of PI0012571 vs. NCBI nr
Match: KAA0066376.1 (hypothetical protein E6C27_scaffold21G004490 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-22
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   MPSGHDSTIALDKAMLFYCIMEEIRINLGEIVCQQIHAFVKHPRGARPFPYLIEQLYLKA 60
           M +  +S +++D+ ML YCIMEE+++NLGEI+C+ I   VKHP GAR FP+LIE+L LK 
Sbjct: 98  MRTRQESIVSMDRMMLIYCIMEELQVNLGEIICEHILECVKHPYGARSFPHLIEKLCLKT 157

Query: 61  VPALKTFPAIPIKDGLCSITSLKRIINLHKNNAEARRLKFAKGG 105
             AL+  P + +KDG+C+  +L RII +HKN A  +RLK  K G
Sbjct: 158 CLALEKLPQVEVKDGMCTTITLPRIIAIHKNKARLKRLKTKKEG 201

[Close]

BLAST of PI0012571 vs. NCBI nr
Match: TYK00908.1 (hypothetical protein E5676_scaffold602G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-22
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   MPSGHDSTIALDKAMLFYCIMEEIRINLGEIVCQQIHAFVKHPRGARPFPYLIEQLYLKA 60
           M +  +S +++D+ ML YCIMEE+++NLGEI+C+ I   VKHP GAR FP+LIE+L LK 
Sbjct: 1   MRTRQESIVSMDRMMLIYCIMEELQVNLGEIICEHILECVKHPYGARSFPHLIEKLCLKT 60

Query: 61  VPALKTFPAIPIKDGLCSITSLKRIINLHKNNAEARRLKFAKGG 105
             AL+  P + +KDG+C+  +L RII +HKN A  +RLK  K G
Sbjct: 61  CLALEKLPQVEVKDGMCTTITLPRIIAIHKNKARLKRLKTKKEG 104

[Close]

BLAST of PI0012571 vs. NCBI nr
Match: KGN57727.1 (hypothetical protein Csa_009739 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 1   MPSGHDSTIALDKAMLFYCIMEEIRINLGEIVCQQIHAFVKHPRGARPFPYLIEQLYLKA 60
           MP+ H STI++++ ML YCIM++I +N+G+I+   I A VKHPRGARPF YLIEQL L+A
Sbjct: 38  MPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFSYLIEQLCLRA 97

Query: 61  VPALKTFPAIPIKDGLCSITSLKRIINLHKNNAEARRLKFAKG 104
              L+  P + +KDG+   ++L RII +HKN A+ + LK  +G
Sbjct: 98  CLMLEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKEG 140

[Close]

BLAST of PI0012571 vs. NCBI nr
Match: KAA0058409.1 (hypothetical protein E6C27_scaffold409G001210 [Cucumis melo var. makuwa] >TYK04704.1 hypothetical protein E5676_scaffold76994G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-20
Identity = 50/99 (50.51%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 1   MPSGHDSTIALDKAMLFYCIMEEIRINLGEIVCQQIHAFVKHPRGARPFPYLIEQLYLKA 60
           MP+  D+ I++DK +L YC +EEI +N+G+I+C+ I A+V+HP  ARP P LIEQ++LKA
Sbjct: 1   MPTHQDNMISMDKTILLYCNIEEILVNVGKIICEHIQAWVRHPHDARPLPNLIEQIFLKA 60

Query: 61  VPALKTFPAIPIKDGLCSITSLKRIINLHKNNAEARRLK 100
             ALK      +KD +C+ITS+  +INL+KN AE + LK
Sbjct: 61  CFALKNLLKTMVKDEICTITSVSHMINLNKNKAEDKCLK 99

The following BLAST results are available for this feature:

BLAST of PI0012571 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRQ1	5.8e-23	50.51	Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00660 P...	[more]
A0A5A7VJ48	9.9e-23	50.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BPB1	9.9e-23	50.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LAN0	7.1e-21	50.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263250 PE=4 SV=1	[more]
A0A5D3C0C3	1.2e-20	50.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0012571 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032726.1	1.2e-22	50.51	drebrin-like [Cucumis melo var. makuwa] >TYJ98758.1 drebrin-like [Cucumis melo v...	[more]
KAA0066376.1	2.0e-22	50.96	hypothetical protein E6C27_scaffold21G004490 [Cucumis melo var. makuwa]	[more]
TYK00908.1	2.0e-22	50.96	hypothetical protein E5676_scaffold602G00710 [Cucumis melo var. makuwa]	[more]
KGN57727.1	1.5e-20	50.49	hypothetical protein Csa_009739 [Cucumis sativus]	[more]
KAA0058409.1	2.5e-20	50.51	hypothetical protein E6C27_scaffold409G001210 [Cucumis melo var. makuwa] >TYK047...	[more]

BLAST of PI0012571 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012571.1	PI0012571.1	mRNA