PI0012543 (gene) Melon (PI 482460) v1

Overview
NamePI0012543
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr11: 299408 .. 299770 (+)
RNA-Seq ExpressionPI0012543
SyntenyPI0012543
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGTTCCAAGCATCGAAACTTTGTCATTCAATTGATTGAAATCATTCGGGTAGTGAAATCGAGTCGTGCATCAGTGTTCCTTGCATCTAACACCATCATTTTGATCCTCTTCGGGGAGAAATTGAAGCGGTTATCGAGCAAAAAAGAAGGGATAGAGGAAATGGGAGAAAGGTGTAAAGATTGTTGTAGTAGGCACAGTGATGAGTTGAATAGTTATGAGAAAATTTGTGTTGAAGATAGTTCTGATGAAGATTGTGAAGAAGGGATTCAAGATGATATAGAGAAGAAGGCTCAAGAGTTTATTGATATGATGAATGCTTTTTGGAGGGAAGAATTGATTCATGATAGGTTTCTTTAA

mRNA sequence

ATGGTGAGTTCCAAGCATCGAAACTTTGTCATTCAATTGATTGAAATCATTCGGGTAGTGAAATCGAGTCGTGCATCAGTGTTCCTTGCATCTAACACCATCATTTTGATCCTCTTCGGGGAGAAATTGAAGCGGTTATCGAGCAAAAAAGAAGGGATAGAGGAAATGGGAGAAAGGTGTAAAGATTGTTGTAGTAGGCACAGTGATGAGTTGAATAGTTATGAGAAAATTTGTGTTGAAGATAGTTCTGATGAAGATTGTGAAGAAGGGATTCAAGATGATATAGAGAAGAAGGCTCAAGAGTTTATTGATATGATGAATGCTTTTTGGAGGGAAGAATTGATTCATGATAGGTTTCTTTAA

Coding sequence (CDS)

ATGGTGAGTTCCAAGCATCGAAACTTTGTCATTCAATTGATTGAAATCATTCGGGTAGTGAAATCGAGTCGTGCATCAGTGTTCCTTGCATCTAACACCATCATTTTGATCCTCTTCGGGGAGAAATTGAAGCGGTTATCGAGCAAAAAAGAAGGGATAGAGGAAATGGGAGAAAGGTGTAAAGATTGTTGTAGTAGGCACAGTGATGAGTTGAATAGTTATGAGAAAATTTGTGTTGAAGATAGTTCTGATGAAGATTGTGAAGAAGGGATTCAAGATGATATAGAGAAGAAGGCTCAAGAGTTTATTGATATGATGAATGCTTTTTGGAGGGAAGAATTGATTCATGATAGGTTTCTTTAA

Protein sequence

MVSSKHRNFVIQLIEIIRVVKSSRASVFLASNTIILILFGEKLKRLSSKKEGIEEMGERCKDCCSRHSDELNSYEKICVEDSSDEDCEEGIQDDIEKKAQEFIDMMNAFWREELIHDRFL
Homology
BLAST of PI0012543 vs. ExPASy TrEMBL
Match: A0A5A7T9A6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00410 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.6e-40
Identity = 99/121 (81.82%), Postives = 104/121 (85.95%), Query Frame = 0

Query: 1   MVSSKHRNFVIQLIEIIRVVKSSRASVFLASNTIILILFGEKLKRLSSKKEGIEEMGERC 60
           MVSSKHRNF+I+LIEII VVKSSRAS+FLASNTI+LILF EKLKRLSSK     E    C
Sbjct: 1   MVSSKHRNFIIRLIEIIWVVKSSRASMFLASNTIVLILFWEKLKRLSSK-----EKESWC 60

Query: 61  KDCCSRHSD-ELNSYEKICVEDSSDEDCEEGIQDDIEKKAQEFIDMMNAFWREELIHDRF 120
           KD CSRHSD ELNS E ICVEDS DE CEEGIQDD+EKKAQEFIDMMNAFWREELIHDRF
Sbjct: 61  KDFCSRHSDGELNSEEIICVEDSCDEGCEEGIQDDLEKKAQEFIDMMNAFWREELIHDRF 116

BLAST of PI0012543 vs. ExPASy TrEMBL
Match: A0A0A0K9S4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G077350 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 7.4e-38
Identity = 98/124 (79.03%), Postives = 104/124 (83.87%), Query Frame = 0

Query: 1   MVSSKHRNFVIQLIEIIRVVKSSRASVFLASNTIILILFGEKLKRLSSKKEGIEEMGERC 60
           MVS  HRN V Q +EI+ VVKSSRAS+FLASNTIILILFG+KLK+LSSK    EE  ERC
Sbjct: 1   MVSFTHRNVVNQSMEIVLVVKSSRASIFLASNTIILILFGKKLKQLSSK----EEEEERC 60

Query: 61  KDCCSRHSD--ELNSYEKICVEDSSDED-CEEG-IQDDIEKKAQEFIDMMNAFWREELIH 120
           KDCCS  SD  ELNSYE ICVEDS DED CEEG IQDD+EKKAQEFIDMMNAFWREELIH
Sbjct: 61  KDCCSGCSDDHELNSYEMICVEDSCDEDYCEEGMIQDDLEKKAQEFIDMMNAFWREELIH 120

BLAST of PI0012543 vs. NCBI nr
Match: KAA0040002.1 (hypothetical protein E6C27_scaffold122G002850 [Cucumis melo var. makuwa] >TYK24499.1 hypothetical protein E5676_scaffold266G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 3.3e-40
Identity = 99/121 (81.82%), Postives = 104/121 (85.95%), Query Frame = 0

Query: 1   MVSSKHRNFVIQLIEIIRVVKSSRASVFLASNTIILILFGEKLKRLSSKKEGIEEMGERC 60
           MVSSKHRNF+I+LIEII VVKSSRAS+FLASNTI+LILF EKLKRLSSK     E    C
Sbjct: 1   MVSSKHRNFIIRLIEIIWVVKSSRASMFLASNTIVLILFWEKLKRLSSK-----EKESWC 60

Query: 61  KDCCSRHSD-ELNSYEKICVEDSSDEDCEEGIQDDIEKKAQEFIDMMNAFWREELIHDRF 120
           KD CSRHSD ELNS E ICVEDS DE CEEGIQDD+EKKAQEFIDMMNAFWREELIHDRF
Sbjct: 61  KDFCSRHSDGELNSEEIICVEDSCDEGCEEGIQDDLEKKAQEFIDMMNAFWREELIHDRF 116

BLAST of PI0012543 vs. NCBI nr
Match: KAE8646698.1 (hypothetical protein Csa_005140 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-37
Identity = 98/124 (79.03%), Postives = 104/124 (83.87%), Query Frame = 0

Query: 1   MVSSKHRNFVIQLIEIIRVVKSSRASVFLASNTIILILFGEKLKRLSSKKEGIEEMGERC 60
           MVS  HRN V Q +EI+ VVKSSRAS+FLASNTIILILFG+KLK+LSSK    EE  ERC
Sbjct: 22  MVSFTHRNVVNQSMEIVLVVKSSRASIFLASNTIILILFGKKLKQLSSK----EEEEERC 81

Query: 61  KDCCSRHSD--ELNSYEKICVEDSSDED-CEEG-IQDDIEKKAQEFIDMMNAFWREELIH 120
           KDCCS  SD  ELNSYE ICVEDS DED CEEG IQDD+EKKAQEFIDMMNAFWREELIH
Sbjct: 82  KDCCSGCSDDHELNSYEMICVEDSCDEDYCEEGMIQDDLEKKAQEFIDMMNAFWREELIH 141

BLAST of PI0012543 vs. NCBI nr
Match: KAG6593708.1 (hypothetical protein SDJN03_13184, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-11
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 0

Query: 35  ILILFGEKLKRLSSKKEGIEEMGERCKDCCSRHSDELNSYEKICVEDSSDEDCEEGIQDD 94
           + ILFGEK K+  S+++GI E  E  +D   R  DEL ++  I V DS DED +E  QDD
Sbjct: 1   MFILFGEKFKQSPSEEKGIGEQVESYED-YDRRDDELITH-NIYVYDSCDEDGDERFQDD 60

Query: 95  IEKKAQEFIDMMNAFWREELIHDRFL 121
            EKKAQEFI+MM +FWREEL+ DRFL
Sbjct: 61  FEKKAQEFIEMMYSFWREELVCDRFL 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T9A61.6e-4081.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K9S47.4e-3879.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G077350 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0040002.13.3e-4081.82hypothetical protein E6C27_scaffold122G002850 [Cucumis melo var. makuwa] >TYK244... [more]
KAE8646698.11.5e-3779.03hypothetical protein Csa_005140 [Cucumis sativus][more]
KAG6593708.13.2e-1155.81hypothetical protein SDJN03_13184, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012543.1PI0012543.1mRNA