PI0012489 (gene) Melon (PI 482460) v1

Overview


Name	PI0012489
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr10: 11756130 .. 11756471 (+)
RNA-Seq Expression	PI0012489
Synteny	PI0012489

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCAACAGAGTTGAAAGAGCTAAAGGTTCAGTTGCAGGAATTGCTTGACAAAGGTTTCATCCGACTGAGGGTGTCACCTCAGGGTGCACCAGTGTTGTTTGTTAAGAAGAAAGATGGGTCGATACGTTTATGTATTGATTACAGAGAGTTGAATAAGGTGACAGTTAAGAACAAGTATCCCCTTCCCAGGATTGATGACTTGTTTGACCAGTTGCAGGGAGCCACCGTGTTCTCTAAGATCGACCTTCGATCGGGATACCATCAGTTGAAAATTAAGGATGGTGATATACCGAAAACGGCTTTCTGTTCGAGGTATAGGCATTATGAGTTCATTTGA

mRNA sequence

ATGACTCCAACAGAGTTGAAAGAGCTAAAGGTTCAGTTGCAGGAATTGCTTGACAAAGGTTTCATCCGACTGAGGGTGTCACCTCAGGGTGCACCAGTGTTGTTTGTTAAGAAGAAAGATGGGTCGATACGTTTATGTATTGATTACAGAGAGTTGAATAAGGTGACAGTTAAGAACAAGTATCCCCTTCCCAGGATTGATGACTTGTTTGACCAGTTGCAGGGAGCCACCGTGTTCTCTAAGATCGACCTTCGATCGGGATACCATCAGTTGAAAATTAAGGATGGTGATATACCGAAAACGGCTTTCTGTTCGAGGTATAGGCATTATGAGTTCATTTGA

Coding sequence (CDS)

ATGACTCCAACAGAGTTGAAAGAGCTAAAGGTTCAGTTGCAGGAATTGCTTGACAAAGGTTTCATCCGACTGAGGGTGTCACCTCAGGGTGCACCAGTGTTGTTTGTTAAGAAGAAAGATGGGTCGATACGTTTATGTATTGATTACAGAGAGTTGAATAAGGTGACAGTTAAGAACAAGTATCCCCTTCCCAGGATTGATGACTTGTTTGACCAGTTGCAGGGAGCCACCGTGTTCTCTAAGATCGACCTTCGATCGGGATACCATCAGTTGAAAATTAAGGATGGTGATATACCGAAAACGGCTTTCTGTTCGAGGTATAGGCATTATGAGTTCATTTGA

Protein sequence

MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAFCSRYRHYEFI

Homology

[Close]

BLAST of PI0012489 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-22
Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 1   MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNK 60
           +T    +E+   +Q+LLD  FI    SP  +PV+ V KKDG+ RLC+DYR LNK T+ + 
Sbjct: 604 VTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDP 663

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAFCSRYRHYEF 113
           +PLPRID+L  ++  A +F+ +DL SGYHQ+ ++  D  KTAF +    YE+
Sbjct: 664 FPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEY 715

[Close]

BLAST of PI0012489 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-22
Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 1   MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNK 60
           +T    +E+   +Q+LLD  FI    SP  +PV+ V KKDG+ RLC+DYR LNK T+ + 
Sbjct: 630 VTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDP 689

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAFCSRYRHYEF 113
           +PLPRID+L  ++  A +F+ +DL SGYHQ+ ++  D  KTAF +    YE+
Sbjct: 690 FPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEY 741

[Close]

BLAST of PI0012489 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-21
Identity = 45/71 (63.38%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 42  SIRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKT 101
           S+R+CIDYR L KVT+KNKYP+PR+DDLFD+L  AT F+K+DLRSGY Q++I  GD PKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 102 AFCSRYRHYEF 113
              +RY  +EF
Sbjct: 65  TCVTRYGSFEF 75

[Close]

BLAST of PI0012489 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-19
Identity = 42/107 (39.25%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 1   MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNK 60
           + P +++ +  ++ + L  G IR   +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAF-CSR 107
           YPLP I+ L  ++QG+T+F+K+DL+S YH ++++ GD  K AF C R
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPR 526

[Close]

BLAST of PI0012489 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-19
Identity = 42/107 (39.25%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 1   MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNK 60
           + P +++ +  ++ + L  G IR   +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAF-CSR 107
           YPLP I+ L  ++QG+T+F+K+DL+S YH ++++ GD  K AF C R
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPR 526

[Close]

BLAST of PI0012489 vs. ExPASy TrEMBL
Match: A0A5A7U149 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83G00930 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.5e-53
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1    MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNK 60
            M P ELKELKVQLQELLDKGFIR  VSP GAPVLFVKKKDGS+RLCIDYRELNKVTVKN+
Sbjct: 1121 MAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 1180

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAFCSRYRHYEFI 114
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGD+PKTAFCSRY HYEFI
Sbjct: 1181 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFCSRYGHYEFI 1233

[Close]

BLAST of PI0012489 vs. ExPASy TrEMBL
Match: A0A5A7UMP2 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G002360 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1    MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNK 60
            M P ELKELKVQLQELLDKGFIRLRVSP GAPV FVKKKDGS+RLCIDYRELNKVTVKN+
Sbjct: 1031 MAPAELKELKVQLQELLDKGFIRLRVSPWGAPVSFVKKKDGSMRLCIDYRELNKVTVKNR 1090

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAFCSRYRHYEFI 114
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGD+PKTAF SRY HYEFI
Sbjct: 1091 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFI 1143

[Close]

BLAST of PI0012489 vs. ExPASy TrEMBL
Match: A0A5A7TR38 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001010 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNK 60
           M P ELKELKVQLQELLDKGFIRL VSP GAPVLFVKKKDGS+RLCIDYRELNKVTVKN+
Sbjct: 567 MAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 626

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAFCSRYRHYEFI 114
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGD+PKTAF SRY HYEFI
Sbjct: 627 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFI 679

[Close]

BLAST of PI0012489 vs. ExPASy TrEMBL
Match: A0A5A7TZP2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00480 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNK 60
           M P ELKELKVQLQELLDKGFIR  VSP GAPVLFVKKKDGS+RLCID+RELNKVTVKNK
Sbjct: 154 MAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDFRELNKVTVKNK 213

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAFCSRYRHYEFI 114
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGD+PKTAF SRYRHYEFI
Sbjct: 214 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYRHYEFI 266

[Close]

BLAST of PI0012489 vs. ExPASy TrEMBL
Match: A0A5D3BFS1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00240 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNK 60
           M P ELKELKVQLQELLDKGFIR  VSP GAPVLFVKKKDGS+RLCID+RELNKVTVKNK
Sbjct: 154 MAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDFRELNKVTVKNK 213

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAFCSRYRHYEFI 114
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGD+PKTAF SRYRHYEFI
Sbjct: 214 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYRHYEFI 266

[Close]

BLAST of PI0012489 vs. NCBI nr
Match: KAA0047209.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 9.2e-53
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1    MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNK 60
            M P ELKELKVQLQELLDKGFIR  VSP GAPVLFVKKKDGS+RLCIDYRELNKVTVKN+
Sbjct: 1121 MAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 1180

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAFCSRYRHYEFI 114
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGD+PKTAFCSRY HYEFI
Sbjct: 1181 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFCSRYGHYEFI 1233

[Close]

BLAST of PI0012489 vs. NCBI nr
Match: KAA0047446.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 4.6e-52
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNK 60
           M P ELKELKVQLQELLDKGFIR  VSP GAPVLFVKKKDGS+RLCID+RELNKVTVKNK
Sbjct: 154 MAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDFRELNKVTVKNK 213

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAFCSRYRHYEFI 114
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGD+PKTAF SRYRHYEFI
Sbjct: 214 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYRHYEFI 266

[Close]

BLAST of PI0012489 vs. NCBI nr
Match: KAA0056464.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 4.6e-52
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1    MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNK 60
            M P ELKELKVQLQELLDKGFIRLRVSP GAPV FVKKKDGS+RLCIDYRELNKVTVKN+
Sbjct: 1031 MAPAELKELKVQLQELLDKGFIRLRVSPWGAPVSFVKKKDGSMRLCIDYRELNKVTVKNR 1090

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAFCSRYRHYEFI 114
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGD+PKTAF SRY HYEFI
Sbjct: 1091 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFI 1143

[Close]

BLAST of PI0012489 vs. NCBI nr
Match: TYJ98640.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 4.6e-52
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNK 60
           M P ELKELKVQLQELLDKGFIR  VSP GAPVLFVKKKDGS+RLCID+RELNKVTVKNK
Sbjct: 154 MAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDFRELNKVTVKNK 213

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAFCSRYRHYEFI 114
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGD+PKTAF SRYRHYEFI
Sbjct: 214 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYRHYEFI 266

[Close]

BLAST of PI0012489 vs. NCBI nr
Match: KAA0045328.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 4.6e-52
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MTPTELKELKVQLQELLDKGFIRLRVSPQGAPVLFVKKKDGSIRLCIDYRELNKVTVKNK 60
           M P ELKELKVQLQELLDKGFIRL VSP GAPVLFVKKKDGS+RLCIDYRELNKVTVKN+
Sbjct: 567 MAPAELKELKVQLQELLDKGFIRLSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 626

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLKIKDGDIPKTAFCSRYRHYEFI 114
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQL+IKDGD+PKTAF SRY HYEFI
Sbjct: 627 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFI 679

The following BLAST results are available for this feature:

BLAST of PI0012489 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.4e-22	44.64	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.4e-22	44.64	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P31843	1.5e-21	63.38	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q9UR07	2.4e-19	39.25	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	2.4e-19	39.25	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of PI0012489 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U149	4.5e-53	91.15	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83...	[more]
A0A5A7UMP2	2.2e-52	91.15	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7TR38	2.2e-52	91.15	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TZP2	2.2e-52	91.15	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00480 PE...	[more]
A0A5D3BFS1	2.2e-52	91.15	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00240 PE...	[more]

BLAST of PI0012489 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047209.1	9.2e-53	91.15	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047446.1	4.6e-52	91.15	pol protein [Cucumis melo var. makuwa]	[more]
KAA0056464.1	4.6e-52	91.15	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
TYJ98640.1	4.6e-52	91.15	pol protein [Cucumis melo var. makuwa]	[more]
KAA0045328.1	4.6e-52	91.15	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0012489 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..112 e-value: 4.1E-46 score: 158.9
None	No IPR available	PANTHER	PTHR15503:SF11	RETROTRANSPOSON GAG-LIKE PROTEIN 6	coord: 1..111
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..112 e-value: 1.44825E-44 score: 140.808
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..88 e-value: 4.1E-46 score: 158.9
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..103 e-value: 3.2E-8 score: 33.3
IPR032567	LDOC1-related	PANTHER	PTHR15503	LDOC1 RELATED	coord: 1..111
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012489.1	PI0012489.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding