PI0012478 (gene) Melon (PI 482460) v1

Overview


Name	PI0012478
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr06: 18122016 .. 18122267 (+)
RNA-Seq Expression	PI0012478
Synteny	PI0012478

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCACAACGTCATCGTTCGATCAAGCATCGACCTGAATCAGAAAGAAGACAAAGATGTCGAAGAAATCCTTGTCGATCGAGTAAAGAAGGGTAGAAGGCCCACGAGGAGAATCCACGAATTCCTGGTCAAGTGGAAGAACCTCCTCATGGAAGAAACTAGTTGGGAATGTGTCGAAGACCTAGAAGCATGGAAGCAGAAGATTAAAGAGTTCCAGCTTCGCCAGTCGACAGGGACGTCAACTTTTTAA

mRNA sequence

ATGCAGCACAACGTCATCGTTCGATCAAGCATCGACCTGAATCAGAAAGAAGACAAAGATGTCGAAGAAATCCTTGTCGATCGAGTAAAGAAGGGTAGAAGGCCCACGAGGAGAATCCACGAATTCCTGGTCAAGTGGAAGAACCTCCTCATGGAAGAAACTAGTTGGGAATGTGTCGAAGACCTAGAAGCATGGAAGCAGAAGATTAAAGAGTTCCAGCTTCGCCAGTCGACAGGGACGTCAACTTTTTAA

Coding sequence (CDS)

ATGCAGCACAACGTCATCGTTCGATCAAGCATCGACCTGAATCAGAAAGAAGACAAAGATGTCGAAGAAATCCTTGTCGATCGAGTAAAGAAGGGTAGAAGGCCCACGAGGAGAATCCACGAATTCCTGGTCAAGTGGAAGAACCTCCTCATGGAAGAAACTAGTTGGGAATGTGTCGAAGACCTAGAAGCATGGAAGCAGAAGATTAAAGAGTTCCAGCTTCGCCAGTCGACAGGGACGTCAACTTTTTAA

Protein sequence

MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTSTF

Homology

[Close]

BLAST of PI0012478 vs. ExPASy TrEMBL
Match: A0A5D3C1P4 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45522G00010 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1   MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVE 60
           +Q N++ R  IDL+QKEDKDVEEIL +RV++GRRPTRRIHE+LVKWKNL +EETSWE VE
Sbjct: 22  LQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPTRRIHEYLVKWKNLPVEETSWERVE 81

Query: 61  DLEAWKQKIKEFQLRQSTGTST 83
           DLEAWKQKIK+F+LRQ TGTST
Sbjct: 82  DLEAWKQKIKDFKLRQLTGTST 103

[Close]

BLAST of PI0012478 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1    MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVE 60
            +Q NV+ R +IDL+QKEDKDVEEIL +RV++GRRP RRIHE+LVKWKNL MEETSWE VE
Sbjct: 1505 LQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPMEETSWERVE 1564

Query: 61   DLEAWKQKIKEFQLRQSTGTST 83
            DLEAWKQKI++F+LRQ TGTST
Sbjct: 1565 DLEAWKQKIEDFKLRQLTGTST 1586

[Close]

BLAST of PI0012478 vs. ExPASy TrEMBL
Match: A0A5A7V1R7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold79511G00030 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.4e-27
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1   MQHN--VIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWEC 60
           MQ N  VIVR +IDL+QKEDKDVEEIL +RV+KGRRPTRRIHE+LVKWKNL +EE+SWE 
Sbjct: 184 MQRNVIVIVRPTIDLSQKEDKDVEEILAERVRKGRRPTRRIHEYLVKWKNLPVEESSWER 243

Query: 61  VEDLEAWKQKIKEFQLRQSTGTST 83
           VEDLEAW QKI+EF+LRQSTGTST
Sbjct: 244 VEDLEAWTQKIEEFKLRQSTGTST 267

[Close]

BLAST of PI0012478 vs. ExPASy TrEMBL
Match: A0A5A7URR9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001520 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.1e-27
Identity = 62/82 (75.61%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1   MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVE 60
           +Q N++ R  IDL+QKEDKDVEEIL +RV++GRRPTRRIHE+LVKWKNL +EETSWE VE
Sbjct: 459 LQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPTRRIHEYLVKWKNLPVEETSWERVE 518

Query: 61  DLEAWKQKIKEFQLRQSTGTST 83
           DLEAWKQKI++F+LRQ TGTST
Sbjct: 519 DLEAWKQKIEDFKLRQLTGTST 540

[Close]

BLAST of PI0012478 vs. ExPASy TrEMBL
Match: A0A5D3BFH0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001520 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.1e-27
Identity = 62/82 (75.61%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1   MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVE 60
           +Q N++ R  IDL+QKEDKDVEEIL +RV++GRRPTRRIHE+LVKWKNL +EETSWE VE
Sbjct: 177 LQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPTRRIHEYLVKWKNLPVEETSWERVE 236

Query: 61  DLEAWKQKIKEFQLRQSTGTST 83
           DLEAWKQKI++F+LRQ TGTST
Sbjct: 237 DLEAWKQKIEDFKLRQLTGTST 258

[Close]

BLAST of PI0012478 vs. NCBI nr
Match: TYK04336.1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.2e-27
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1   MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVE 60
           +Q N++ R  IDL+QKEDKDVEEIL +RV++GRRPTRRIHE+LVKWKNL +EETSWE VE
Sbjct: 22  LQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPTRRIHEYLVKWKNLPVEETSWERVE 81

Query: 61  DLEAWKQKIKEFQLRQSTGTST 83
           DLEAWKQKIK+F+LRQ TGTST
Sbjct: 82  DLEAWKQKIKDFKLRQLTGTST 103

[Close]

BLAST of PI0012478 vs. NCBI nr
Match: KAA0036830.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 2.9e-27
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1    MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVE 60
            +Q NV+ R +IDL+QKEDKDVEEIL +RV++GRRP RRIHE+LVKWKNL MEETSWE VE
Sbjct: 1505 LQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPMEETSWERVE 1564

Query: 61   DLEAWKQKIKEFQLRQSTGTST 83
            DLEAWKQKI++F+LRQ TGTST
Sbjct: 1565 DLEAWKQKIEDFKLRQLTGTST 1586

[Close]

BLAST of PI0012478 vs. NCBI nr
Match: KAA0060777.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK01225.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 4.9e-27
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1   MQHN--VIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWEC 60
           MQ N  VIVR +IDL+QKEDKDVEEIL +RV+KGRRPTRRIHE+LVKWKNL +EE+SWE 
Sbjct: 184 MQRNVIVIVRPTIDLSQKEDKDVEEILAERVRKGRRPTRRIHEYLVKWKNLPVEESSWER 243

Query: 61  VEDLEAWKQKIKEFQLRQSTGTST 83
           VEDLEAW QKI+EF+LRQSTGTST
Sbjct: 244 VEDLEAWTQKIEEFKLRQSTGTST 267

[Close]

BLAST of PI0012478 vs. NCBI nr
Match: KAA0057858.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 6.4e-27
Identity = 62/82 (75.61%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1   MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVE 60
           +Q N++ R  IDL+QKEDKDVEEIL +RV++GRRPTRRIHE+LVKWKNL +EETSWE VE
Sbjct: 459 LQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPTRRIHEYLVKWKNLPVEETSWERVE 518

Query: 61  DLEAWKQKIKEFQLRQSTGTST 83
           DLEAWKQKI++F+LRQ TGTST
Sbjct: 519 DLEAWKQKIEDFKLRQLTGTST 540

[Close]

BLAST of PI0012478 vs. NCBI nr
Match: TYJ98540.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 6.4e-27
Identity = 62/82 (75.61%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1   MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVE 60
           +Q N++ R  IDL+QKEDKDVEEIL +RV++GRRPTRRIHE+LVKWKNL +EETSWE VE
Sbjct: 177 LQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPTRRIHEYLVKWKNLPVEETSWERVE 236

Query: 61  DLEAWKQKIKEFQLRQSTGTST 83
           DLEAWKQKI++F+LRQ TGTST
Sbjct: 237 DLEAWKQKIEDFKLRQLTGTST 258

The following BLAST results are available for this feature:

BLAST of PI0012478 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012478 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1P4	1.1e-27	76.83	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Cucumis melo var. ma...	[more]
A0A5A7T0E2	1.4e-27	76.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5A7V1R7	2.4e-27	79.76	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold79...	[more]
A0A5A7URR9	3.1e-27	75.61	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3BFH0	3.1e-27	75.61	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35...	[more]

BLAST of PI0012478 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04336.1	2.2e-27	76.83	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Cucumis melo var. maku...	[more]
KAA0036830.1	2.9e-27	76.83	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0060777.1	4.9e-27	79.76	reverse transcriptase [Cucumis melo var. makuwa] >TYK01225.1 reverse transcripta...	[more]
KAA0057858.1	6.4e-27	75.61	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYJ98540.1	6.4e-27	75.61	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of PI0012478 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.40		coord: 13..81 e-value: 9.9E-12 score: 46.4
None	No IPR available	CDD	cd00024	CD_CSD	coord: 21..73 e-value: 2.10955E-7 score: 41.3085
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 20..73 e-value: 3.4E-10 score: 39.7
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 19..83 score: 11.453401
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 14..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012478.1	PI0012478.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity