PI0012474 (gene) Melon (PI 482460) v1

Overview
NamePI0012474
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr06: 17650213 .. 17650563 (+)
RNA-Seq ExpressionPI0012474
SyntenyPI0012474
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACCCTTTGAGGTCGCAAAGAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGATGAGCATAGTTTGTCCTTTGAATGTTCAAGTGAGGAGATGCCTCACCCAAATATAATGTCAGTAATGGTGACTGACGTGGATACAAGTGAAGATAGAATGACGGAGCTTGAAAATAAGGTTAACATGCTCCTGGAGGCAGTTGGAGAAAGGGATTATAAGATTGCATCCATGAAAAGTCATATCGAAAGTCATGACGCTGCTGAATCAAGTCACACATATACCATCAAGAATAAGGACAAAGGGAAGACGATTTTGTAA

mRNA sequence

ATGCCACCCTTTGAGGTCGCAAAGAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGATGAGCATAGTTTGTCCTTTGAATGTTCAAGTGAGGAGATGCCTCACCCAAATATAATGTCAGTAATGGTGACTGACGTGGATACAAGTGAAGATAGAATGACGGAGCTTGAAAATAAGGTTAACATGCTCCTGGAGGCAGTTGGAGAAAGGGATTATAAGATTGCATCCATGAAAAGTCATATCGAAAGTCATGACGCTGCTGAATCAAGTCACACATATACCATCAAGAATAAGGACAAAGGGAAGACGATTTTGTAA

Coding sequence (CDS)

ATGCCACCCTTTGAGGTCGCAAAGAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGATGAGCATAGTTTGTCCTTTGAATGTTCAAGTGAGGAGATGCCTCACCCAAATATAATGTCAGTAATGGTGACTGACGTGGATACAAGTGAAGATAGAATGACGGAGCTTGAAAATAAGGTTAACATGCTCCTGGAGGCAGTTGGAGAAAGGGATTATAAGATTGCATCCATGAAAAGTCATATCGAAAGTCATGACGCTGCTGAATCAAGTCACACATATACCATCAAGAATAAGGACAAAGGGAAGACGATTTTGTAA

Protein sequence

MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL
Homology
BLAST of PI0012474 vs. ExPASy TrEMBL
Match: A0A5D3C857 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00540 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 95/115 (82.61%), Postives = 106/115 (92.17%), Query Frame = 0

Query: 2   PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSE 61
           P FEVAKNIWEQ+SKPPKGGI+IKENP IDEH+ SFE SSEEMPH NIMSVMVTDVDTSE
Sbjct: 34  PHFEVAKNIWEQISKPPKGGIVIKENPTIDEHNSSFEHSSEEMPHLNIMSVMVTDVDTSE 93

Query: 62  DRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           +RM ELE KVNML++AV ERDY+IAS+K+HIESHDAAESSHT+TIKN DKGKTI+
Sbjct: 94  NRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTHTIKNVDKGKTII 148

BLAST of PI0012474 vs. ExPASy TrEMBL
Match: A0A5A7T5T3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1244G00140 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.6e-44
Identity = 92/115 (80.00%), Postives = 104/115 (90.43%), Query Frame = 0

Query: 2   PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSE 61
           P FEVAKNIWEQ+SKPPKGGI+IKENP IDEH+ SFE S EEMPH NIMSVMVTDVDTSE
Sbjct: 34  PHFEVAKNIWEQISKPPKGGIVIKENPTIDEHNSSFEHSIEEMPHLNIMSVMVTDVDTSE 93

Query: 62  DRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           +RM ELE KVNML++AV ERDY+IAS+K+HIESHDAAESSHT+TIKN +KGK I+
Sbjct: 94  NRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTHTIKNANKGKAII 148

BLAST of PI0012474 vs. ExPASy TrEMBL
Match: A0A5D3CD55 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00850 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 89/115 (77.39%), Postives = 103/115 (89.57%), Query Frame = 0

Query: 2   PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSE 61
           PPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH  S + SSEEMPHPNIMSVMVT+VDTSE
Sbjct: 34  PPFEVAKNIWEQISKPPKGGIVIKENPAIDEHYSSSQPSSEEMPHPNIMSVMVTNVDTSE 93

Query: 62  DRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           +RMTELE KVNML++ V ERDY+IA +K+HIESHDAAESSH +T+KN DKGK ++
Sbjct: 94  NRMTELEKKVNMLMKVVEERDYEIAFLKNHIESHDAAESSHKHTVKNTDKGKAVM 148

BLAST of PI0012474 vs. ExPASy TrEMBL
Match: A0A5D3BRH6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00640 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.6e-43
Identity = 88/116 (75.86%), Postives = 105/116 (90.52%), Query Frame = 0

Query: 1   MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTS 60
           MPPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH+   E S+EE+P PNIMS+MVTDVDTS
Sbjct: 33  MPPFEVAKNIWEQISKPPKGGIVIKENPAIDEHNSLSERSNEEVPQPNIMSIMVTDVDTS 92

Query: 61  EDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           EDRMT+LE KVNML++AV ERD++IA +K+HIESHDAAESSH++TIKN +KGK I+
Sbjct: 93  EDRMTDLEKKVNMLMKAVEERDFEIALLKNHIESHDAAESSHSHTIKNVNKGKAIM 148

BLAST of PI0012474 vs. ExPASy TrEMBL
Match: A0A5A7UZD5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004860 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.6e-43
Identity = 88/116 (75.86%), Postives = 105/116 (90.52%), Query Frame = 0

Query: 1   MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTS 60
           MPPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH+   E S+EE+P PNIMS+MVTDVDTS
Sbjct: 33  MPPFEVAKNIWEQISKPPKGGIVIKENPAIDEHNSLSERSNEEVPQPNIMSIMVTDVDTS 92

Query: 61  EDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           EDRMT+LE KVNML++AV ERD++IA +K+HIESHDAAESSH++TIKN +KGK I+
Sbjct: 93  EDRMTDLEKKVNMLMKAVEERDFEIALLKNHIESHDAAESSHSHTIKNVNKGKAIM 148

BLAST of PI0012474 vs. NCBI nr
Match: TYK07338.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 2.5e-45
Identity = 95/115 (82.61%), Postives = 106/115 (92.17%), Query Frame = 0

Query: 2   PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSE 61
           P FEVAKNIWEQ+SKPPKGGI+IKENP IDEH+ SFE SSEEMPH NIMSVMVTDVDTSE
Sbjct: 34  PHFEVAKNIWEQISKPPKGGIVIKENPTIDEHNSSFEHSSEEMPHLNIMSVMVTDVDTSE 93

Query: 62  DRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           +RM ELE KVNML++AV ERDY+IAS+K+HIESHDAAESSHT+TIKN DKGKTI+
Sbjct: 94  NRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTHTIKNVDKGKTII 148

BLAST of PI0012474 vs. NCBI nr
Match: KAA0036729.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-43
Identity = 92/115 (80.00%), Postives = 104/115 (90.43%), Query Frame = 0

Query: 2   PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSE 61
           P FEVAKNIWEQ+SKPPKGGI+IKENP IDEH+ SFE S EEMPH NIMSVMVTDVDTSE
Sbjct: 34  PHFEVAKNIWEQISKPPKGGIVIKENPTIDEHNSSFEHSIEEMPHLNIMSVMVTDVDTSE 93

Query: 62  DRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           +RM ELE KVNML++AV ERDY+IAS+K+HIESHDAAESSHT+TIKN +KGK I+
Sbjct: 94  NRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTHTIKNANKGKAII 148

BLAST of PI0012474 vs. NCBI nr
Match: TYK09793.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 89/115 (77.39%), Postives = 103/115 (89.57%), Query Frame = 0

Query: 2   PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSE 61
           PPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH  S + SSEEMPHPNIMSVMVT+VDTSE
Sbjct: 34  PPFEVAKNIWEQISKPPKGGIVIKENPAIDEHYSSSQPSSEEMPHPNIMSVMVTNVDTSE 93

Query: 62  DRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           +RMTELE KVNML++ V ERDY+IA +K+HIESHDAAESSH +T+KN DKGK ++
Sbjct: 94  NRMTELEKKVNMLMKVVEERDYEIAFLKNHIESHDAAESSHKHTVKNTDKGKAVM 148

BLAST of PI0012474 vs. NCBI nr
Match: TYK02263.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42
Identity = 88/116 (75.86%), Postives = 105/116 (90.52%), Query Frame = 0

Query: 1   MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTS 60
           MPPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH+   E S+EE+P PNIMS+MVTDVDTS
Sbjct: 33  MPPFEVAKNIWEQISKPPKGGIVIKENPAIDEHNSLSERSNEEVPQPNIMSIMVTDVDTS 92

Query: 61  EDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           EDRMT+LE KVNML++AV ERD++IA +K+HIESHDAAESSH++TIKN +KGK I+
Sbjct: 93  EDRMTDLEKKVNMLMKAVEERDFEIALLKNHIESHDAAESSHSHTIKNVNKGKAIM 148

BLAST of PI0012474 vs. NCBI nr
Match: KAA0060608.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42
Identity = 88/116 (75.86%), Postives = 105/116 (90.52%), Query Frame = 0

Query: 1   MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTS 60
           MPPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH+   E S+EE+P PNIMS+MVTDVDTS
Sbjct: 33  MPPFEVAKNIWEQISKPPKGGIVIKENPAIDEHNSLSERSNEEVPQPNIMSIMVTDVDTS 92

Query: 61  EDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           EDRMT+LE KVNML++AV ERD++IA +K+HIESHDAAESSH++TIKN +KGK I+
Sbjct: 93  EDRMTDLEKKVNMLMKAVEERDFEIALLKNHIESHDAAESSHSHTIKNVNKGKAIM 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C8571.2e-4582.61Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7T5T36.6e-4480.00Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CD551.1e-4377.39Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BRH65.6e-4375.86Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UZD55.6e-4375.86Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
TYK07338.12.5e-4582.61ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0036729.11.4e-4380.00ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK09793.12.3e-4377.39ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK02263.11.2e-4275.86ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0060608.11.2e-4275.86ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 57..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012474.1PI0012474.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity