PI0012474 (gene) Melon (PI 482460) v1

Overview


Name	PI0012474
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr06: 17650213 .. 17650563 (+)
RNA-Seq Expression	PI0012474
Synteny	PI0012474

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCCTTTGAGGTCGCAAAGAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGATGAGCATAGTTTGTCCTTTGAATGTTCAAGTGAGGAGATGCCTCACCCAAATATAATGTCAGTAATGGTGACTGACGTGGATACAAGTGAAGATAGAATGACGGAGCTTGAAAATAAGGTTAACATGCTCCTGGAGGCAGTTGGAGAAAGGGATTATAAGATTGCATCCATGAAAAGTCATATCGAAAGTCATGACGCTGCTGAATCAAGTCACACATATACCATCAAGAATAAGGACAAAGGGAAGACGATTTTGTAA

mRNA sequence

ATGCCACCCTTTGAGGTCGCAAAGAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGATGAGCATAGTTTGTCCTTTGAATGTTCAAGTGAGGAGATGCCTCACCCAAATATAATGTCAGTAATGGTGACTGACGTGGATACAAGTGAAGATAGAATGACGGAGCTTGAAAATAAGGTTAACATGCTCCTGGAGGCAGTTGGAGAAAGGGATTATAAGATTGCATCCATGAAAAGTCATATCGAAAGTCATGACGCTGCTGAATCAAGTCACACATATACCATCAAGAATAAGGACAAAGGGAAGACGATTTTGTAA

Coding sequence (CDS)

ATGCCACCCTTTGAGGTCGCAAAGAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGATGAGCATAGTTTGTCCTTTGAATGTTCAAGTGAGGAGATGCCTCACCCAAATATAATGTCAGTAATGGTGACTGACGTGGATACAAGTGAAGATAGAATGACGGAGCTTGAAAATAAGGTTAACATGCTCCTGGAGGCAGTTGGAGAAAGGGATTATAAGATTGCATCCATGAAAAGTCATATCGAAAGTCATGACGCTGCTGAATCAAGTCACACATATACCATCAAGAATAAGGACAAAGGGAAGACGATTTTGTAA

Protein sequence

MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL

Homology

[Close]

BLAST of PI0012474 vs. ExPASy TrEMBL
Match: A0A5D3C857 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00540 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 95/115 (82.61%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 2   PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSE 61
           P FEVAKNIWEQ+SKPPKGGI+IKENP IDEH+ SFE SSEEMPH NIMSVMVTDVDTSE
Sbjct: 34  PHFEVAKNIWEQISKPPKGGIVIKENPTIDEHNSSFEHSSEEMPHLNIMSVMVTDVDTSE 93

Query: 62  DRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           +RM ELE KVNML++AV ERDY+IAS+K+HIESHDAAESSHT+TIKN DKGKTI+
Sbjct: 94  NRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTHTIKNVDKGKTII 148

[Close]

BLAST of PI0012474 vs. ExPASy TrEMBL
Match: A0A5A7T5T3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1244G00140 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.6e-44
Identity = 92/115 (80.00%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 2   PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSE 61
           P FEVAKNIWEQ+SKPPKGGI+IKENP IDEH+ SFE S EEMPH NIMSVMVTDVDTSE
Sbjct: 34  PHFEVAKNIWEQISKPPKGGIVIKENPTIDEHNSSFEHSIEEMPHLNIMSVMVTDVDTSE 93

Query: 62  DRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           +RM ELE KVNML++AV ERDY+IAS+K+HIESHDAAESSHT+TIKN +KGK I+
Sbjct: 94  NRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTHTIKNANKGKAII 148

[Close]

BLAST of PI0012474 vs. ExPASy TrEMBL
Match: A0A5D3CD55 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00850 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 89/115 (77.39%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 2   PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSE 61
           PPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH  S + SSEEMPHPNIMSVMVT+VDTSE
Sbjct: 34  PPFEVAKNIWEQISKPPKGGIVIKENPAIDEHYSSSQPSSEEMPHPNIMSVMVTNVDTSE 93

Query: 62  DRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           +RMTELE KVNML++ V ERDY+IA +K+HIESHDAAESSH +T+KN DKGK ++
Sbjct: 94  NRMTELEKKVNMLMKVVEERDYEIAFLKNHIESHDAAESSHKHTVKNTDKGKAVM 148

[Close]

BLAST of PI0012474 vs. ExPASy TrEMBL
Match: A0A5D3BRH6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00640 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.6e-43
Identity = 88/116 (75.86%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTS 60
           MPPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH+   E S+EE+P PNIMS+MVTDVDTS
Sbjct: 33  MPPFEVAKNIWEQISKPPKGGIVIKENPAIDEHNSLSERSNEEVPQPNIMSIMVTDVDTS 92

Query: 61  EDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           EDRMT+LE KVNML++AV ERD++IA +K+HIESHDAAESSH++TIKN +KGK I+
Sbjct: 93  EDRMTDLEKKVNMLMKAVEERDFEIALLKNHIESHDAAESSHSHTIKNVNKGKAIM 148

[Close]

BLAST of PI0012474 vs. ExPASy TrEMBL
Match: A0A5A7UZD5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004860 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.6e-43
Identity = 88/116 (75.86%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTS 60
           MPPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH+   E S+EE+P PNIMS+MVTDVDTS
Sbjct: 33  MPPFEVAKNIWEQISKPPKGGIVIKENPAIDEHNSLSERSNEEVPQPNIMSIMVTDVDTS 92

Query: 61  EDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           EDRMT+LE KVNML++AV ERD++IA +K+HIESHDAAESSH++TIKN +KGK I+
Sbjct: 93  EDRMTDLEKKVNMLMKAVEERDFEIALLKNHIESHDAAESSHSHTIKNVNKGKAIM 148

[Close]

BLAST of PI0012474 vs. NCBI nr
Match: TYK07338.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 2.5e-45
Identity = 95/115 (82.61%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 2   PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSE 61
           P FEVAKNIWEQ+SKPPKGGI+IKENP IDEH+ SFE SSEEMPH NIMSVMVTDVDTSE
Sbjct: 34  PHFEVAKNIWEQISKPPKGGIVIKENPTIDEHNSSFEHSSEEMPHLNIMSVMVTDVDTSE 93

Query: 62  DRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           +RM ELE KVNML++AV ERDY+IAS+K+HIESHDAAESSHT+TIKN DKGKTI+
Sbjct: 94  NRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTHTIKNVDKGKTII 148

[Close]

BLAST of PI0012474 vs. NCBI nr
Match: KAA0036729.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-43
Identity = 92/115 (80.00%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 2   PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSE 61
           P FEVAKNIWEQ+SKPPKGGI+IKENP IDEH+ SFE S EEMPH NIMSVMVTDVDTSE
Sbjct: 34  PHFEVAKNIWEQISKPPKGGIVIKENPTIDEHNSSFEHSIEEMPHLNIMSVMVTDVDTSE 93

Query: 62  DRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           +RM ELE KVNML++AV ERDY+IAS+K+HIESHDAAESSHT+TIKN +KGK I+
Sbjct: 94  NRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTHTIKNANKGKAII 148

[Close]

BLAST of PI0012474 vs. NCBI nr
Match: TYK09793.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 89/115 (77.39%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 2   PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSE 61
           PPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH  S + SSEEMPHPNIMSVMVT+VDTSE
Sbjct: 34  PPFEVAKNIWEQISKPPKGGIVIKENPAIDEHYSSSQPSSEEMPHPNIMSVMVTNVDTSE 93

Query: 62  DRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           +RMTELE KVNML++ V ERDY+IA +K+HIESHDAAESSH +T+KN DKGK ++
Sbjct: 94  NRMTELEKKVNMLMKVVEERDYEIAFLKNHIESHDAAESSHKHTVKNTDKGKAVM 148

[Close]

BLAST of PI0012474 vs. NCBI nr
Match: TYK02263.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42
Identity = 88/116 (75.86%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTS 60
           MPPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH+   E S+EE+P PNIMS+MVTDVDTS
Sbjct: 33  MPPFEVAKNIWEQISKPPKGGIVIKENPAIDEHNSLSERSNEEVPQPNIMSIMVTDVDTS 92

Query: 61  EDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           EDRMT+LE KVNML++AV ERD++IA +K+HIESHDAAESSH++TIKN +KGK I+
Sbjct: 93  EDRMTDLEKKVNMLMKAVEERDFEIALLKNHIESHDAAESSHSHTIKNVNKGKAIM 148

[Close]

BLAST of PI0012474 vs. NCBI nr
Match: KAA0060608.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42
Identity = 88/116 (75.86%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTS 60
           MPPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH+   E S+EE+P PNIMS+MVTDVDTS
Sbjct: 33  MPPFEVAKNIWEQISKPPKGGIVIKENPAIDEHNSLSERSNEEVPQPNIMSIMVTDVDTS 92

Query: 61  EDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKDKGKTIL 117
           EDRMT+LE KVNML++AV ERD++IA +K+HIESHDAAESSH++TIKN +KGK I+
Sbjct: 93  EDRMTDLEKKVNMLMKAVEERDFEIALLKNHIESHDAAESSHSHTIKNVNKGKAIM 148

The following BLAST results are available for this feature:

BLAST of PI0012474 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012474 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C857	1.2e-45	82.61	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T5T3	6.6e-44	80.00	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CD55	1.1e-43	77.39	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BRH6	5.6e-43	75.86	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UZD5	5.6e-43	75.86	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of PI0012474 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07338.1	2.5e-45	82.61	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036729.1	1.4e-43	80.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK09793.1	2.3e-43	77.39	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK02263.1	1.2e-42	75.86	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0060608.1	1.2e-42	75.86	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0012474 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012474.1	PI0012474.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity