PI0012461 (gene) Melon (PI 482460) v1

Overview


Name	PI0012461
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pol protein
Location	chr05: 7464795 .. 7465034 (+)
RNA-Seq Expression	PI0012461
Synteny	PI0012461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGGAAATACGTGGTTGACCCATCTCATGTTTTGGATTATGAGCCTTTAGCGATTGATGAGAATTTGAGCTACGTAGAGCATCCAGTTGAGATTTTAGCCAAGGAAGTAAAGACGCTCCGTAACCGGGAAATTGCCTTAGTAAAGGTCCTTTGGCGCAATCACCAGATGGAAGAGGCCACATGGGAGCGAGAGGATGACATGAGAGCTCGTTACCCAGAGTTGTTCGAGGGTTAG

mRNA sequence

ATGTTGAGGAAATACGTGGTTGACCCATCTCATGTTTTGGATTATGAGCCTTTAGCGATTGATGAGAATTTGAGCTACGTAGAGCATCCAGTTGAGATTTTAGCCAAGGAAGTAAAGACGCTCCGTAACCGGGAAATTGCCTTAGTAAAGGTCCTTTGGCGCAATCACCAGATGGAAGAGGCCACATGGGAGCGAGAGGATGACATGAGAGCTCGTTACCCAGAGTTGTTCGAGGGTTAG

Coding sequence (CDS)

ATGTTGAGGAAATACGTGGTTGACCCATCTCATGTTTTGGATTATGAGCCTTTAGCGATTGATGAGAATTTGAGCTACGTAGAGCATCCAGTTGAGATTTTAGCCAAGGAAGTAAAGACGCTCCGTAACCGGGAAATTGCCTTAGTAAAGGTCCTTTGGCGCAATCACCAGATGGAAGAGGCCACATGGGAGCGAGAGGATGACATGAGAGCTCGTTACCCAGAGTTGTTCGAGGGTTAG

Protein sequence

MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG

Homology

[Close]

BLAST of PI0012461 vs. ExPASy TrEMBL
Match: A0A5A7VIQ0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15212G00010 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.2e-32
Identity = 68/79 (86.08%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEE 60
           MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI+LVKVLWRNH++EE
Sbjct: 284 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEISLVKVLWRNHRVEE 343

Query: 61  ATWEREDDMRARYPELFEG 80
           ATWEREDDMR+RYPELFEG
Sbjct: 344 ATWEREDDMRSRYPELFEG 362

[Close]

BLAST of PI0012461 vs. ExPASy TrEMBL
Match: A0A5A7TGS7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00240 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 67/79 (84.81%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1    MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEE 60
            MLRKYV+DPSHV+DYEPL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNH++EE
Sbjct: 1596 MLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1655

Query: 61   ATWEREDDMRARYPELFEG 80
            ATWEREDDMR+RYPELFEG
Sbjct: 1656 ATWEREDDMRSRYPELFEG 1674

[Close]

BLAST of PI0012461 vs. ExPASy TrEMBL
Match: A0A5A7UJG5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31080G00010 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-31
Identity = 68/78 (87.18%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1   MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEE 60
           MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI LVKVLWRNHQ+EE
Sbjct: 302 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHQVEE 361

Query: 61  ATWEREDDMRARYPELFE 79
           ATWEREDDMR+RYPELFE
Sbjct: 362 ATWEREDDMRSRYPELFE 379

[Close]

BLAST of PI0012461 vs. ExPASy TrEMBL
Match: A0A5A7TM23 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33643G00010 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.0e-31
Identity = 68/79 (86.08%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEE 60
          MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI LVKVLWRNH++EE
Sbjct: 1  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60

Query: 61 ATWEREDDMRARYPELFEG 80
          ATWEREDDMR RYPELFEG
Sbjct: 61 ATWEREDDMRFRYPELFEG 79

[Close]

BLAST of PI0012461 vs. ExPASy TrEMBL
Match: A0A5A7T8G8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00730 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 67/79 (84.81%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1    MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEE 60
            MLRKYV DPSHV+DYEPL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNH++EE
Sbjct: 1196 MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1255

Query: 61   ATWEREDDMRARYPELFEG 80
            ATWEREDDMR+RYPELFEG
Sbjct: 1256 ATWEREDDMRSRYPELFEG 1274

[Close]

BLAST of PI0012461 vs. NCBI nr
Match: KAA0068212.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 68/79 (86.08%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEE 60
           MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI+LVKVLWRNH++EE
Sbjct: 284 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEISLVKVLWRNHRVEE 343

Query: 61  ATWEREDDMRARYPELFEG 80
           ATWEREDDMR+RYPELFEG
Sbjct: 344 ATWEREDDMRSRYPELFEG 362

[Close]

BLAST of PI0012461 vs. NCBI nr
Match: KAA0040871.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.4e-31
Identity = 67/79 (84.81%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1    MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEE 60
            MLRKYV+DPSHV+DYEPL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNH++EE
Sbjct: 1596 MLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1655

Query: 61   ATWEREDDMRARYPELFEG 80
            ATWEREDDMR+RYPELFEG
Sbjct: 1656 ATWEREDDMRSRYPELFEG 1674

[Close]

BLAST of PI0012461 vs. NCBI nr
Match: KAA0053631.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 3.1e-31
Identity = 68/78 (87.18%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1   MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEE 60
           MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI LVKVLWRNHQ+EE
Sbjct: 302 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHQVEE 361

Query: 61  ATWEREDDMRARYPELFE 79
           ATWEREDDMR+RYPELFE
Sbjct: 362 ATWEREDDMRSRYPELFE 379

[Close]

BLAST of PI0012461 vs. NCBI nr
Match: KAA0043066.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 4.1e-31
Identity = 68/79 (86.08%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEE 60
          MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI LVKVLWRNH++EE
Sbjct: 1  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60

Query: 61 ATWEREDDMRARYPELFEG 80
          ATWEREDDMR RYPELFEG
Sbjct: 61 ATWEREDDMRFRYPELFEG 79

[Close]

BLAST of PI0012461 vs. NCBI nr
Match: KAA0037901.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 5.3e-31
Identity = 67/79 (84.81%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1    MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEE 60
            MLRKYV DPSHV+DYEPL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNH++EE
Sbjct: 1196 MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1255

Query: 61   ATWEREDDMRARYPELFEG 80
            ATWEREDDMR+RYPELFEG
Sbjct: 1256 ATWEREDDMRSRYPELFEG 1274

The following BLAST results are available for this feature:

BLAST of PI0012461 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIQ0	5.2e-32	86.08	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15212G00010 ...	[more]
A0A5A7TGS7	1.2e-31	84.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]
A0A5A7UJG5	1.5e-31	87.18	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TM23	2.0e-31	86.08	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33643G00010 ...	[more]
A0A5A7T8G8	2.6e-31	84.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36...	[more]

BLAST of PI0012461 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068212.1	1.1e-31	86.08	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040871.1	2.4e-31	84.81	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0053631.1	3.1e-31	87.18	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0043066.1	4.1e-31	86.08	pol protein [Cucumis melo var. makuwa]	[more]
KAA0037901.1	5.3e-31	84.81	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0012461 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148:SF33	OS05G0296332 PROTEIN	coord: 1..77
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..77
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 7..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012461.1	PI0012461.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding