PI0012366 (gene) Melon (PI 482460) v1

Overview


Name	PI0012366
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Location	chr08: 1438315 .. 1438710 (+)
RNA-Seq Expression	PI0012366
Synteny	PI0012366

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCGCGGAACCTTATCTGAGTTATATTTGCCTGCCCGTTCATTAGAGCCTAGCAAGCATGTGACACCACGATTCAAAAATTGGTGGGCCACGAAGCATGGGACCTATTTTGAGGATAATAAACACCATTTGGTGAGCAGTGCCATTCCTCCCCCGTCACAACCCAAACTGCCAAAGAATCGAGGAAGCAATGTAGGCGGCAAACAGATCCACTTGATTGAGGCAATGGCTCTTACCCACGATAGAGAGGTTAAGGAACACAGAGAGCAGAGCGATAGCAGCAGAAGCGACCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGCATCGGGCGATGATTCATGTGGAAGAGGTTCAACTGCCATGGAAATTCCTAACGTTCCAACACCATTG

mRNA sequence

ATGAGGCGCGGAACCTTATCTGAGTTATATTTGCCTGCCCGTTCATTAGAGCCTAGCAAGCATGTGACACCACGATTCAAAAATTGGTGGGCCACGAAGCATGGGACCTATTTTGAGGATAATAAACACCATTTGGTGAGCAGTGCCATTCCTCCCCCGTCACAACCCAAACTGCCAAAGAATCGAGGAAGCAATGTAGGCGGCAAACAGATCCACTTGATTGAGGCAATGGCTCTTACCCACGATAGAGAGGTTAAGGAACACAGAGAGCAGAGCGATAGCAGCAGAAGCGACCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGCATCGGGCGATGATTCATGTGGAAGAGGTTCAACTGCCATGGAAATTCCTAACGTTCCAACACCATTG

Coding sequence (CDS)

ATGAGGCGCGGAACCTTATCTGAGTTATATTTGCCTGCCCGTTCATTAGAGCCTAGCAAGCATGTGACACCACGATTCAAAAATTGGTGGGCCACGAAGCATGGGACCTATTTTGAGGATAATAAACACCATTTGGTGAGCAGTGCCATTCCTCCCCCGTCACAACCCAAACTGCCAAAGAATCGAGGAAGCAATGTAGGCGGCAAACAGATCCACTTGATTGAGGCAATGGCTCTTACCCACGATAGAGAGGTTAAGGAACACAGAGAGCAGAGCGATAGCAGCAGAAGCGACCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGCATCGGGCGATGATTCATGTGGAAGAGGTTCAACTGCCATGGAAATTCCTAACGTTCCAACACCATTG

Protein sequence

MRRGTLSELYLPARSLEPSKHVTPRFKNWWATKHGTYFEDNKHHLVSSAIPPPSQPKLPKNRGSNVGGKQIHLIEAMALTHDREVKEHREQSDSSRSDRHWKRPLKKAKASGDDSCGRGSTAMEIPNVPTPL

Homology

[Close]

BLAST of PI0012366 vs. ExPASy TrEMBL
Match: A0A5A7SQC9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00140 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.9e-50
Identity = 96/128 (75.00%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 2   RRGTLSELYLPARSLEPSKHVTPRFKNWWATKHGTYFEDNKHHLVSSAIPPPSQPKLPKN 61
           RR TLSELYLP RSLEP KHVT RF +WW TKHGTYFEDN+HHLVSS IPPPSQP+LPKN
Sbjct: 183 RRNTLSELYLPTRSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSVIPPPSQPRLPKN 242

Query: 62  RGSNVGGKQIHLIEAMALTHDREVKEHREQSDSSRSDRHWKRPLKKAKASGDDSCGRGST 121
           RGSN+GGK+I L+EAMA   + EVKEH+++SDSS+SDRHWKRPLKKAK SGD   GRG +
Sbjct: 243 RGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLS 302

Query: 122 AMEIPNVP 130
           A+E+P+VP
Sbjct: 303 ALEVPDVP 310

[Close]

BLAST of PI0012366 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.6e-49
Identity = 96/128 (75.00%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 2   RRGTLSELYLPARSLEPSKHVTPRFKNWWATKHGTYFEDNKHHLVSSAIPPPSQPKLPKN 61
           RR TLSELYLPARSLEP KHVT RF +WW TKHGTYFEDN+HHLVSSAIPP SQP+LPKN
Sbjct: 502 RRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPSSQPRLPKN 561

Query: 62  RGSNVGGKQIHLIEAMALTHDREVKEHREQSDSSRSDRHWKRPLKKAKASGDDSCGRGST 121
           RGSN+GGK+I L+EAMA   + EVKE +++SDSS+SDRHWKRPLKKAK SGD   GRG +
Sbjct: 562 RGSNLGGKEIRLVEAMAPNLEEEVKERKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLS 621

Query: 122 AMEIPNVP 130
           A+E+P+VP
Sbjct: 622 ALEVPDVP 629

[Close]

BLAST of PI0012366 vs. ExPASy TrEMBL
Match: A0A5A7UVI5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00470 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.3e-48
Identity = 96/129 (74.42%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MRRGTLSELYLPARSLEPSKHVTPRFKNWWATKHGTYFEDNKHHLVSSAIPPPSQPKLPK 60
           MRR TLSELYLPARSLEP KHVT RF +WW TKHGTYFEDN+HHLVSSAIPPPSQP+LPK
Sbjct: 325 MRRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPK 384

Query: 61  NRGSNVGGKQIHLIEAMALTHDREVKEHREQSDSSRSDRHWKRPLKKAKASGDDSCGRGS 120
           NRGSN+GGK+I L+EAMA   + EV EH  +SDS++SDRHWKRPLKK K SGD   GRG 
Sbjct: 385 NRGSNLGGKEIRLVEAMAPNLEDEVNEH--ESDSNKSDRHWKRPLKKTKVSGDHPDGRGL 444

Query: 121 TAMEIPNVP 130
           +A+E+P+VP
Sbjct: 445 SALEVPDVP 451

[Close]

BLAST of PI0012366 vs. ExPASy TrEMBL
Match: A0A5A7SHN8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00400 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.7e-48
Identity = 94/128 (73.44%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 2   RRGTLSELYLPARSLEPSKHVTPRFKNWWATKHGTYFEDNKHHLVSSAIPPPSQPKLPKN 61
           RR TLSELYLPARSLEP KHVT RF +WW TKHGTYFEDN+HHLVSSAIPPPSQ +LPKN
Sbjct: 502 RRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQSRLPKN 561

Query: 62  RGSNVGGKQIHLIEAMALTHDREVKEHREQSDSSRSDRHWKRPLKKAKASGDDSCGRGST 121
           RG N+GGK+I L+EAMA   + EVKEH+++SDSS+SDRHWKRPLKKA+ SGD    RG +
Sbjct: 562 RGRNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAEVSGDHPNERGLS 621

Query: 122 AMEIPNVP 130
           A+E+P+VP
Sbjct: 622 ALEVPDVP 629

[Close]

BLAST of PI0012366 vs. ExPASy TrEMBL
Match: A0A5D3D7V4 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00260 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.6e-48
Identity = 95/128 (74.22%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 2   RRGTLSELYLPARSLEPSKHVTPRFKNWWATKHGTYFEDNKHHLVSSAIPPPSQPKLPKN 61
           RR TL ELYLPARSLEP KHVT RF +WW TKHGTYFEDN+HHLVSS IPPPSQP+LPKN
Sbjct: 470 RRNTLFELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSVIPPPSQPRLPKN 529

Query: 62  RGSNVGGKQIHLIEAMALTHDREVKEHREQSDSSRSDRHWKRPLKKAKASGDDSCGRGST 121
           RGSN+GGK+I L+EAMA   + EVKEH  +SDSS+SD HWKRPLKKAK SGD   GRG +
Sbjct: 530 RGSNLGGKEIRLVEAMAPNLEEEVKEH--ESDSSKSDHHWKRPLKKAKVSGDHPNGRGLS 589

Query: 122 AMEIPNVP 130
           A+E+P+VP
Sbjct: 590 ALEVPDVP 595

[Close]

BLAST of PI0012366 vs. NCBI nr
Match: KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 208.4 bits (529), Expect = 3.8e-50
Identity = 96/128 (75.00%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 2   RRGTLSELYLPARSLEPSKHVTPRFKNWWATKHGTYFEDNKHHLVSSAIPPPSQPKLPKN 61
           RR TLSELYLP RSLEP KHVT RF +WW TKHGTYFEDN+HHLVSS IPPPSQP+LPKN
Sbjct: 183 RRNTLSELYLPTRSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSVIPPPSQPRLPKN 242

Query: 62  RGSNVGGKQIHLIEAMALTHDREVKEHREQSDSSRSDRHWKRPLKKAKASGDDSCGRGST 121
           RGSN+GGK+I L+EAMA   + EVKEH+++SDSS+SDRHWKRPLKKAK SGD   GRG +
Sbjct: 243 RGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLS 302

Query: 122 AMEIPNVP 130
           A+E+P+VP
Sbjct: 303 ALEVPDVP 310

[Close]

BLAST of PI0012366 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 3.2e-49
Identity = 96/128 (75.00%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 2   RRGTLSELYLPARSLEPSKHVTPRFKNWWATKHGTYFEDNKHHLVSSAIPPPSQPKLPKN 61
           RR TLSELYLPARSLEP KHVT RF +WW TKHGTYFEDN+HHLVSSAIPP SQP+LPKN
Sbjct: 502 RRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPSSQPRLPKN 561

Query: 62  RGSNVGGKQIHLIEAMALTHDREVKEHREQSDSSRSDRHWKRPLKKAKASGDDSCGRGST 121
           RGSN+GGK+I L+EAMA   + EVKE +++SDSS+SDRHWKRPLKKAK SGD   GRG +
Sbjct: 562 RGSNLGGKEIRLVEAMAPNLEEEVKERKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLS 621

Query: 122 AMEIPNVP 130
           A+E+P+VP
Sbjct: 622 ALEVPDVP 629

[Close]

BLAST of PI0012366 vs. NCBI nr
Match: KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 202.2 bits (513), Expect = 2.7e-48
Identity = 96/129 (74.42%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MRRGTLSELYLPARSLEPSKHVTPRFKNWWATKHGTYFEDNKHHLVSSAIPPPSQPKLPK 60
           MRR TLSELYLPARSLEP KHVT RF +WW TKHGTYFEDN+HHLVSSAIPPPSQP+LPK
Sbjct: 325 MRRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPK 384

Query: 61  NRGSNVGGKQIHLIEAMALTHDREVKEHREQSDSSRSDRHWKRPLKKAKASGDDSCGRGS 120
           NRGSN+GGK+I L+EAMA   + EV EH  +SDS++SDRHWKRPLKK K SGD   GRG 
Sbjct: 385 NRGSNLGGKEIRLVEAMAPNLEDEVNEH--ESDSNKSDRHWKRPLKKTKVSGDHPDGRGL 444

Query: 121 TAMEIPNVP 130
           +A+E+P+VP
Sbjct: 445 SALEVPDVP 451

[Close]

BLAST of PI0012366 vs. NCBI nr
Match: KAA0025356.1 (hypothetical protein E6C27_scaffold1204G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 3.6e-48
Identity = 94/128 (73.44%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 2   RRGTLSELYLPARSLEPSKHVTPRFKNWWATKHGTYFEDNKHHLVSSAIPPPSQPKLPKN 61
           RR TLSELYLPARSLEP KHVT RF +WW TKHGTYFEDN+HHLVSSAIPPPSQ +LPKN
Sbjct: 502 RRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQSRLPKN 561

Query: 62  RGSNVGGKQIHLIEAMALTHDREVKEHREQSDSSRSDRHWKRPLKKAKASGDDSCGRGST 121
           RG N+GGK+I L+EAMA   + EVKEH+++SDSS+SDRHWKRPLKKA+ SGD    RG +
Sbjct: 562 RGRNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAEVSGDHPNERGLS 621

Query: 122 AMEIPNVP 130
           A+E+P+VP
Sbjct: 622 ALEVPDVP 629

[Close]

BLAST of PI0012366 vs. NCBI nr
Match: TYK19639.1 (hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-47
Identity = 95/128 (74.22%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 2   RRGTLSELYLPARSLEPSKHVTPRFKNWWATKHGTYFEDNKHHLVSSAIPPPSQPKLPKN 61
           RR TL ELYLPARSLEP KHVT RF +WW TKHGTYFEDN+HHLVSS IPPPSQP+LPKN
Sbjct: 470 RRNTLFELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSVIPPPSQPRLPKN 529

Query: 62  RGSNVGGKQIHLIEAMALTHDREVKEHREQSDSSRSDRHWKRPLKKAKASGDDSCGRGST 121
           RGSN+GGK+I L+EAMA   + EVKEH  +SDSS+SD HWKRPLKKAK SGD   GRG +
Sbjct: 530 RGSNLGGKEIRLVEAMAPNLEEEVKEH--ESDSSKSDHHWKRPLKKAKVSGDHPNGRGLS 589

Query: 122 AMEIPNVP 130
           A+E+P+VP
Sbjct: 590 ALEVPDVP 595

The following BLAST results are available for this feature:

BLAST of PI0012366 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012366 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQC9	1.9e-50	75.00	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TX42	1.6e-49	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UVI5	1.3e-48	74.42	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7SHN8	1.7e-48	73.44	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3D7V4	6.6e-48	74.22	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of PI0012366 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031751.1	3.8e-50	75.00	hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]	[more]
KAA0047478.1	3.2e-49	75.00	hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]	[more]
KAA0057575.1	2.7e-48	74.42	hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa]	[more]
KAA0025356.1	3.6e-48	73.44	hypothetical protein E6C27_scaffold1204G00400 [Cucumis melo var. makuwa]	[more]
TYK19639.1	1.4e-47	74.22	hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa]	[more]

BLAST of PI0012366 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012366.1	PI0012366.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane