PI0012332 (gene) Melon (PI 482460) v1

Overview
NamePI0012332
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionU3 small nucleolar RNA-associated protein 14 homolog A isoform X1
Locationchr01: 24931252 .. 24932120 (-)
RNA-Seq ExpressionPI0012332
SyntenyPI0012332
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTAGTGATTGTAGTGAAGGAGAGACTTTTCCTGGGGATGTTTATGAGTATGAAGAGGTTGCTCCTGAGGAGGAGTCCAGGAAGAACCACCGTTATGATACAGTTGATAACTATGACTACGAGCTGCCCTGATCACTTTAAGGTTAGTGTCATTGTTTTGGTTCATTGTCTATTTTACTTTTTAGAATTTGATTTTGCACTCCGTTGAATTAATGAATGTTTTATGACTTTTTTCACCTCCAAGTTGAGAATTTATTCTGTTAGGGTCAAAGAGGCCAAAAATTTAGATGTAGAGATACATGAAAGATAAATAGTAAAACAAAGGTTAACTAAACGCAGACAAACTTAGAATCAATGACATTTTGTAGCACTTCTGAAGTTTAATGTCTGTATTGTAAAGGAATGTGCCGGTCAGTAAGGTAATGGTGTCTCAATCTTGTATTTAGGGGCAATTTGGATACAATGAAGTTCGATTAGTTTGTCTATGGTGGATGAGTTACATTACATGCATATTTTGTCCCATGATCAGTTGTTTCTTTATGTTTTATTCATTATAGGATGAGAATGTATCCTCAGATGACGAGGAAATTGATGGAAGAAATGGTAAAGGAAACTTGACGAAGATTCAGATAATGCCGATCCGAAAAAAGACGATGGTAGTCATGCTAGGATGTTGCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTCCTCAGCTAATAATGAGTCTTATGAACTTCCATCTCAATCAGATTTATTCGCCAAGCTTTTGCTGGAGACGATGTAG

mRNA sequence

ATGAGGTTAGTGATTGTAGTGAAGGAGAGACTTTTCCTGGGGATGTTTATGAGTATGAAGAGGTTGCTCCTGAGGAGGAGTCCAGGAAGAACCACCGTTATGATACAGTTGATAACTATGACTACGAGCTGCCCTGATCACTTTAAGGATGAGAATGTATCCTCAGATGACGAGGAAATTGATGGAAGAAATGGTAAAGGAAACTTGACGAAGATTCAGATAATGCCGATCCGAAAAAAGACGATGGTAGTCATGCTAGGATCTAATAATGAGTCTTATGAACTTCCATCTCAATCAGATTTATTCGCCAAGCTTTTGCTGGAGACGATGTAG

Coding sequence (CDS)

ATGAGGTTAGTGATTGTAGTGAAGGAGAGACTTTTCCTGGGGATGTTTATGAGTATGAAGAGGTTGCTCCTGAGGAGGAGTCCAGGAAGAACCACCGTTATGATACAGTTGATAACTATGACTACGAGCTGCCCTGATCACTTTAAGGATGAGAATGTATCCTCAGATGACGAGGAAATTGATGGAAGAAATGGTAAAGGAAACTTGACGAAGATTCAGATAATGCCGATCCGAAAAAAGACGATGGTAGTCATGCTAGGATCTAATAATGAGTCTTATGAACTTCCATCTCAATCAGATTTATTCGCCAAGCTTTTGCTGGAGACGATGTAG

Protein sequence

MRLVIVVKERLFLGMFMSMKRLLLRRSPGRTTVMIQLITMTTSCPDHFKDENVSSDDEEIDGRNGKGNLTKIQIMPIRKKTMVVMLGSNNESYELPSQSDLFAKLLLETM
Homology
[Close]
BLAST of PI0012332 vs. ExPASy TrEMBL
Match: A0A0A0K5G1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G397580 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.5e-05
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 45  PDHFKDENVSSDDEEIDGRNGKGNLTK 72
           PDHFKDE+VSSDDEEIDGRNGKGNLT+
Sbjct: 108 PDHFKDEDVSSDDEEIDGRNGKGNLTE 134

[Close]
BLAST of PI0012332 vs. ExPASy TrEMBL
Match: A0A5A7VL94 (U3 small nucleolar RNA-associated protein 14-like protein A isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001790 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.7e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 45  PDHFKDENVSSDDEEIDGRNGKGNL 70
           PDHFKDE+VSSDDEEIDGRNGKGNL
Sbjct: 154 PDHFKDEDVSSDDEEIDGRNGKGNL 178

[Close]
BLAST of PI0012332 vs. ExPASy TrEMBL
Match: A0A5D3D3T7 (U3 small nucleolar RNA-associated protein 14-like protein A isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00660 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.7e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 45  PDHFKDENVSSDDEEIDGRNGKGNL 70
           PDHFKDE+VSSDDEEIDGRNGKGNL
Sbjct: 154 PDHFKDEDVSSDDEEIDGRNGKGNL 178

[Close]
BLAST of PI0012332 vs. ExPASy TrEMBL
Match: A0A1S3BSV8 (U3 small nucleolar RNA-associated protein 14 homolog A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492806 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.7e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 45  PDHFKDENVSSDDEEIDGRNGKGNL 70
           PDHFKDE+VSSDDEEIDGRNGKGNL
Sbjct: 108 PDHFKDEDVSSDDEEIDGRNGKGNL 132

[Close]
BLAST of PI0012332 vs. ExPASy TrEMBL
Match: A0A1S3BSJ8 (U3 small nucleolar RNA-associated protein 14 homolog A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492806 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.7e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 45  PDHFKDENVSSDDEEIDGRNGKGNL 70
           PDHFKDE+VSSDDEEIDGRNGKGNL
Sbjct: 108 PDHFKDEDVSSDDEEIDGRNGKGNL 132

[Close]
BLAST of PI0012332 vs. NCBI nr
Match: XP_004136023.1 (U3 small nucleolar RNA-associated protein 14 homolog A [Cucumis sativus] >XP_031744784.1 U3 small nucleolar RNA-associated protein 14 homolog A [Cucumis sativus] >XP_031744785.1 U3 small nucleolar RNA-associated protein 14 homolog A [Cucumis sativus] >XP_031744786.1 U3 small nucleolar RNA-associated protein 14 homolog A [Cucumis sativus] >KGN44945.1 hypothetical protein Csa_016491 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-04
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 45  PDHFKDENVSSDDEEIDGRNGKGNLTK 72
           PDHFKDE+VSSDDEEIDGRNGKGNLT+
Sbjct: 108 PDHFKDEDVSSDDEEIDGRNGKGNLTE 134

[Close]
BLAST of PI0012332 vs. NCBI nr
Match: TYK18136.1 (U3 small nucleolar RNA-associated protein 14-like protein A isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 7.7e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 45  PDHFKDENVSSDDEEIDGRNGKGNL 70
           PDHFKDE+VSSDDEEIDGRNGKGNL
Sbjct: 154 PDHFKDEDVSSDDEEIDGRNGKGNL 178

[Close]
BLAST of PI0012332 vs. NCBI nr
Match: KAA0067990.1 (U3 small nucleolar RNA-associated protein 14-like protein A isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 7.7e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 45  PDHFKDENVSSDDEEIDGRNGKGNL 70
           PDHFKDE+VSSDDEEIDGRNGKGNL
Sbjct: 154 PDHFKDEDVSSDDEEIDGRNGKGNL 178

[Close]
BLAST of PI0012332 vs. NCBI nr
Match: XP_008451562.1 (PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog A isoform X2 [Cucumis melo])

HSP 1 Score: 54.3 bits (129), Expect = 7.7e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 45  PDHFKDENVSSDDEEIDGRNGKGNL 70
           PDHFKDE+VSSDDEEIDGRNGKGNL
Sbjct: 108 PDHFKDEDVSSDDEEIDGRNGKGNL 132

[Close]
BLAST of PI0012332 vs. NCBI nr
Match: XP_008451560.1 (PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog A isoform X1 [Cucumis melo])

HSP 1 Score: 54.3 bits (129), Expect = 7.7e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 45  PDHFKDENVSSDDEEIDGRNGKGNL 70
           PDHFKDE+VSSDDEEIDGRNGKGNL
Sbjct: 108 PDHFKDEDVSSDDEEIDGRNGKGNL 132

The following BLAST results are available for this feature:
BLAST of PI0012332 vs.
Match NameE-valueIdentityDescription
BLAST of PI0012332 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5G17.5e-0592.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G397580 PE=4 SV=1[more]
A0A5A7VL943.7e-0496.00U3 small nucleolar RNA-associated protein 14-like protein A isoform X1 OS=Cucumi... [more]
A0A5D3D3T73.7e-0496.00U3 small nucleolar RNA-associated protein 14-like protein A isoform X2 OS=Cucumi... [more]
A0A1S3BSV83.7e-0496.00U3 small nucleolar RNA-associated protein 14 homolog A isoform X2 OS=Cucumis mel... [more]
A0A1S3BSJ83.7e-0496.00U3 small nucleolar RNA-associated protein 14 homolog A isoform X1 OS=Cucumis mel... [more]
BLAST of PI0012332 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136023.11.6e-0492.59U3 small nucleolar RNA-associated protein 14 homolog A [Cucumis sativus] >XP_031... [more]
TYK18136.17.7e-0496.00U3 small nucleolar RNA-associated protein 14-like protein A isoform X2 [Cucumis ... [more]
KAA0067990.17.7e-0496.00U3 small nucleolar RNA-associated protein 14-like protein A isoform X1 [Cucumis ... [more]
XP_008451562.17.7e-0496.00PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog A isoform X2 [Cu... [more]
XP_008451560.17.7e-0496.00PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog A isoform X1 [Cu... [more]
BLAST of PI0012332 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012332.1PI0012332.1mRNA