PI0012289 (gene) Melon (PI 482460) v1

Overview
NamePI0012289
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionIntegrase, catalytic core
Locationchr11: 7104773 .. 7105330 (+)
RNA-Seq ExpressionPI0012289
SyntenyPI0012289
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCTATGCGATTTATGAATGATTTGATGACAAATGTGTTCTACGTGATGAATTTTACACTTGATTTAAAAAGAGAACGATTTTCTAGGCGATTTATAAAGGTTTGGTGATTATTGTTCTATGCGATAATGTTGTTGTTTGAAAAGAGAAGACTATTGATTTCTATGTGATGATTGTGATGCTTGTATGCAAATAAACCATTAGTCTTATTTCTATCAAGTGAGTAGATATTTGTGGTGTGCACATAATGTGTGAAGGCATCAGCAGACAACTTCATCGTGTTTGGACCTTATGGTGTCAAGGTCTACCAAGATTTGAAAGTCAGTGGCAAACTGTTGATGGAAGAACAAGAGATAGATTTCATCTATGTCATGTTAGTAGAAGACGCCTACATGAATAAGCAAAGGCACCCAAGGACAAAGTGCGTTAATTTCATTGGTGAACAACGTCATACAAGAAATGTTACAGTTGATGAAGCATTATCAAGGAAGACACTTAAGGATGAGAGATCTTTTGAAGAAGGATCCAAAGATGAGGTAAGTCAAGTGCAATAG

mRNA sequence

ATGATTTCTATGCGATTTATGAATGATTTGATGACAAATGTGTTCTACGTGATGAATTTTACACTTGATTTAAAAAGAGAACGATTTTCTAGGCGATTTATAAAGGCATCAGCAGACAACTTCATCGTGTTTGGACCTTATGGTGTCAAGGTCTACCAAGATTTGAAAGTCAGTGGCAAACTGTTGATGGAAGAACAAGAGATAGATTTCATCTATGTCATGTTAGTAGAAGACGCCTACATGAATAAGCAAAGGCACCCAAGGACAAAGTGCGTTAATTTCATTGGTGAACAACGTCATACAAGAAATGTTACAGTTGATGAAGCATTATCAAGGAAGACACTTAAGGATGAGAGATCTTTTGAAGAAGGATCCAAAGATGAGGTAAGTCAAGTGCAATAG

Coding sequence (CDS)

ATGATTTCTATGCGATTTATGAATGATTTGATGACAAATGTGTTCTACGTGATGAATTTTACACTTGATTTAAAAAGAGAACGATTTTCTAGGCGATTTATAAAGGCATCAGCAGACAACTTCATCGTGTTTGGACCTTATGGTGTCAAGGTCTACCAAGATTTGAAAGTCAGTGGCAAACTGTTGATGGAAGAACAAGAGATAGATTTCATCTATGTCATGTTAGTAGAAGACGCCTACATGAATAAGCAAAGGCACCCAAGGACAAAGTGCGTTAATTTCATTGGTGAACAACGTCATACAAGAAATGTTACAGTTGATGAAGCATTATCAAGGAAGACACTTAAGGATGAGAGATCTTTTGAAGAAGGATCCAAAGATGAGGTAAGTCAAGTGCAATAG

Protein sequence

MISMRFMNDLMTNVFYVMNFTLDLKRERFSRRFIKASADNFIVFGPYGVKVYQDLKVSGKLLMEEQEIDFIYVMLVEDAYMNKQRHPRTKCVNFIGEQRHTRNVTVDEALSRKTLKDERSFEEGSKDEVSQVQ
Homology
BLAST of PI0012289 vs. ExPASy TrEMBL
Match: A0A0A0K4U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G305380 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 0

Query: 24  LKRERFSRRFIKASADNFIVFGPYGVKVYQDLKVSGKLLMEEQEIDFIYVMLVEDAYMNK 83
           L  E+F       SA  F+VFGP GVKVYQDL+ SGKLLME QE+D IY+ML EDAYM+ 
Sbjct: 3   LNAEKFVPISQLTSAGKFVVFGPNGVKVYQDLEASGKLLMERQEMDSIYIMLAEDAYMDM 62

Query: 84  QRHPRTKCVNFIGEQRHTRNVTVD-EAL-SRKTLKDERSFEEGSKDEVSQV 133
           QRH  T+C++   EQ HT N  +  +AL S KT KDERSFEEGSKDE+S+V
Sbjct: 63  QRHLVTECIDSTDEQCHTINEALSWKALDSEKTPKDERSFEEGSKDEISRV 113

BLAST of PI0012289 vs. ExPASy TrEMBL
Match: A0A5A7TNQ2 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00830 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 34/53 (64.15%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 37  SADNFIVFGPYGVKVYQDLKVSGKLLMEEQEIDFIYVMLVEDAYMNKQRHPRT 90
           SA NF+VFGP  VKVY +LKVSG  LME Q +D IYVML E  YMNK R   T
Sbjct: 149 SAGNFVVFGPKDVKVYHNLKVSGTPLMEGQMMDSIYVMLAETTYMNKTRKNET 201

BLAST of PI0012289 vs. ExPASy TrEMBL
Match: A0A5A7TYD2 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001190 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 0

Query: 11  MTNVFYVMNFTLDLKRERFSRRFIKASADNFIVFGPYGVKVYQDLKVSGKLLMEEQEIDF 70
           + NVFYV      +K+   S   +  SA NF+VFGP  VKVY +LKVSG  LME + +D 
Sbjct: 205 LDNVFYVSG----MKKNLVSVSQL-TSAGNFVVFGPDDVKVYHNLKVSGTPLMEGRRMDS 264

Query: 71  IYVMLVEDAYMNKQR 86
           IYVM  E AY+NK R
Sbjct: 265 IYVMSAETAYVNKTR 274

BLAST of PI0012289 vs. ExPASy TrEMBL
Match: A0A5A7ST06 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00370 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 11  MTNVFYVMNFTLDLKRERFSRRFIKASADNFIVFGPYGVKVYQDLKVSGKLLMEEQEIDF 70
           + NVFYV    L++K+   S   +  SA NFIVFG   VKVY +LKVSG  LME + +D 
Sbjct: 90  LDNVFYV----LEMKKNLVSVSQL-TSASNFIVFGSNNVKVYHNLKVSGTPLMEGRRMDS 149

Query: 71  IYVMLVEDAYMNKQRHPRT 90
           IYVM  E  Y+NK +   T
Sbjct: 150 IYVMSAETTYINKMQKNET 163

BLAST of PI0012289 vs. ExPASy TrEMBL
Match: A0A5D3DG87 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold440G00230 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 11  MTNVFYVMNFTLDLKRERFSRRFIKASADNFIVFGPYGVKVYQDLKVSGKLLMEEQEIDF 70
           + NVFYV    L++K+   S   +  SA NFIVFG   VKVY +LKVSG  LME + +D 
Sbjct: 282 LDNVFYV----LEMKKNLVSVSQL-TSASNFIVFGSNNVKVYHNLKVSGTPLMEGRRMDS 341

Query: 71  IYVMLVEDAYMNKQRHPRT 90
           IYVM  E  Y+NK +   T
Sbjct: 342 IYVMSAETTYINKTQKNET 355

BLAST of PI0012289 vs. NCBI nr
Match: KAA0045163.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK23575.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-07
Identity = 34/53 (64.15%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 37  SADNFIVFGPYGVKVYQDLKVSGKLLMEEQEIDFIYVMLVEDAYMNKQRHPRT 90
           SA NF+VFGP  VKVY +LKVSG  LME Q +D IYVML E  YMNK R   T
Sbjct: 149 SAGNFVVFGPKDVKVYHNLKVSGTPLMEGQMMDSIYVMLAETTYMNKTRKNET 201

BLAST of PI0012289 vs. NCBI nr
Match: KAA0046986.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK04797.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-06
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 0

Query: 11  MTNVFYVMNFTLDLKRERFSRRFIKASADNFIVFGPYGVKVYQDLKVSGKLLMEEQEIDF 70
           + NVFYV      +K+   S   +  SA NF+VFGP  VKVY +LKVSG  LME + +D 
Sbjct: 205 LDNVFYVSG----MKKNLVSVSQL-TSAGNFVVFGPDDVKVYHNLKVSGTPLMEGRRMDS 264

Query: 71  IYVMLVEDAYMNKQR 86
           IYVM  E AY+NK R
Sbjct: 265 IYVMSAETAYVNKTR 274

BLAST of PI0012289 vs. NCBI nr
Match: KAA0033603.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-06
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 11  MTNVFYVMNFTLDLKRERFSRRFIKASADNFIVFGPYGVKVYQDLKVSGKLLMEEQEIDF 70
           + NVFYV    L++K+   S   +  SA NFIVFG   VKVY +LKVSG  LME + +D 
Sbjct: 90  LDNVFYV----LEMKKNLVSVSQL-TSASNFIVFGSNNVKVYHNLKVSGTPLMEGRRMDS 149

Query: 71  IYVMLVEDAYMNKQRHPRT 90
           IYVM  E  Y+NK +   T
Sbjct: 150 IYVMSAETTYINKMQKNET 163

BLAST of PI0012289 vs. NCBI nr
Match: TYK22269.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-06
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 11  MTNVFYVMNFTLDLKRERFSRRFIKASADNFIVFGPYGVKVYQDLKVSGKLLMEEQEIDF 70
           + NVFYV    L++K+   S   +  SA NFIVFG   VKVY +LKVSG  LME + +D 
Sbjct: 282 LDNVFYV----LEMKKNLVSVSQL-TSASNFIVFGSNNVKVYHNLKVSGTPLMEGRRMDS 341

Query: 71  IYVMLVEDAYMNKQRHPRT 90
           IYVM  E  Y+NK +   T
Sbjct: 342 IYVMSAETTYINKTQKNET 355

BLAST of PI0012289 vs. NCBI nr
Match: KAA0037350.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ97557.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 5.8e-06
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 11  MTNVFYVMNFTLDLKRERFSRRFIKASADNFIVFGPYGVKVYQDLKVSGKLLMEEQEIDF 70
           + NVFYV      +K+   S   +  SADNF+VFG   VKVY +LKVSG  LME + +D 
Sbjct: 340 LDNVFYVTG----MKKNLVSVSQL-TSADNFVVFGLDDVKVYHNLKVSGSPLMEGRRMDS 399

Query: 71  IYVMLVEDAYMNKQRHPRT 90
           IYVM  + AY+NK R   T
Sbjct: 400 IYVMSAKTAYVNKMRKNET 413

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K4U22.5e-2360.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G305380 PE=4 SV=1[more]
A0A5A7TNQ21.5e-0764.15UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7TYD21.3e-0650.67Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7ST061.7e-0648.10Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A5D3DG872.2e-0648.10Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
Match NameE-valueIdentityDescription
KAA0045163.13.1e-0764.15UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK23575.1 UBN2_3 d... [more]
KAA0046986.12.6e-0650.67Integrase, catalytic core [Cucumis melo var. makuwa] >TYK04797.1 Integrase, cata... [more]
KAA0033603.13.4e-0648.10Integrase, catalytic core [Cucumis melo var. makuwa][more]
TYK22269.14.5e-0648.10Integrase, catalytic core [Cucumis melo var. makuwa][more]
KAA0037350.15.8e-0648.10Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ97557.1 Integrase, cata... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012289.1PI0012289.1mRNA