PI0012276 (gene) Melon (PI 482460) v1

Overview
NamePI0012276
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Descriptionpentatricopeptide repeat-containing protein At4g02750-like
Locationchr01: 26966770 .. 26967061 (+)
RNA-Seq ExpressionPI0012276
SyntenyPI0012276
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAACAAGGGAGTTGCAAAAGAACCAGGAGTCAGTTGGATTCAGATCAAGTGCTGGGTACGCTATTTTCTTACCAAGGACGATTCTCACGACGAGATTGAAGAAATTCATTCGTGCTTGAAGGTGTTGTTAAAACATCTCACCATGGCAGGTTATGTGCCAGAGACAAATTTTATGCTCCGTGATGTGGAAGAACAAAAACAAAATGAGCTTCGGAACCATAGTGAGAAGCTTGTCGTTGCTTATGGGATCTTGCACACACCAAACAAGATACCGATTCAAATCATGA

mRNA sequence

ATGAAAAACAAGGGAGTTGCAAAAGAACCAGGAGTCAGTTGGATTCAGATCAAGTGCTGGGTACGCTATTTTCTTACCAAGGACGATTCTCACGACGAGATTGAAGAAATTCATTCGTGCTTGAAGGTGTTACAAATTTTATGCTCCGTGATGTGGAAGAACAAAAACAAAATGAGCTTCGGAACCATAGTGAGAAGCTTGTCGTTGCTTATGGGATCTTGCACACACCAAACAAGATACCGATTCAAATCATGA

Coding sequence (CDS)

ATGAAAAACAAGGGAGTTGCAAAAGAACCAGGAGTCAGTTGGATTCAGATCAAGTGCTGGGTACGCTATTTTCTTACCAAGGACGATTCTCACGACGAGATTGAAGAAATTCATTCGTGCTTGAAGGTGTTACAAATTTTATGCTCCGTGATGTGGAAGAACAAAAACAAAATGAGCTTCGGAACCATAGTGAGAAGCTTGTCGTTGCTTATGGGATCTTGCACACACCAAACAAGATACCGATTCAAATCATGA

Protein sequence

MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVLQILCSVMWKNKNKMSFGTIVRSLSLLMGSCTHQTRYRFKS
Homology
BLAST of PI0012276 vs. ExPASy Swiss-Prot
Match: Q9SIT7 (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.5e-05
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL 45
           M+ +GV K+PG SWI+I+     F+ KD SH   ++IHS L +L
Sbjct: 621 MRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDIL 664

BLAST of PI0012276 vs. ExPASy Swiss-Prot
Match: Q9FK93 (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana OX=3702 GN=EMB2744 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.2e-05
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLK 43
           M N+GV KEPGVSWI I+     FL +D+ H EI  I++ +K
Sbjct: 567 MNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVK 608

BLAST of PI0012276 vs. ExPASy Swiss-Prot
Match: Q9SVP7 (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.7e-04
Identity = 19/38 (50.00%), Postives = 24/38 (63.16%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIH 39
           MK KGV KEPG SWI++K  +  F   D +H   +EIH
Sbjct: 921 MKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIH 958

BLAST of PI0012276 vs. ExPASy Swiss-Prot
Match: O64766 (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.1e-04
Identity = 23/59 (38.98%), Postives = 33/59 (55.93%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVLQILCSVMWKNKNKMS 60
           MK KG+ K+PG SW+++      F+  D SH + E + S   +L  L + M KNKN  S
Sbjct: 562 MKEKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFEALDS---ILSDLRNKMRKNKNVTS 617

BLAST of PI0012276 vs. ExPASy Swiss-Prot
Match: Q9SVA5 (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E52 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.1e-04
Identity = 22/46 (47.83%), Postives = 28/46 (60.87%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVLQI 47
           MK +GV KEPG SWI I   V  FL+KD SH +  +I+  L  L +
Sbjct: 783 MKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLLV 828

BLAST of PI0012276 vs. ExPASy TrEMBL
Match: A0A0A0KA26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432230 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.5e-24
Identity = 63/97 (64.95%), Postives = 70/97 (72.16%), Query Frame = 0

Query: 1  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIE------------EIHSCLKVLQILC 60
          MK+KGVAKEPGVSWIQ+KC V YFLTKDD HD+IE              H  L  +QILC
Sbjct: 1  MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIEGDSFMLEGVVKTSHHGRLCQIQILC 60

Query: 61 SVMWKN-KNKMSFGTIVRSLSLLMGSCTHQTRYRFKS 85
          S+MWK  KNK+SF TIVRSL LLMGSCTHQTR + KS
Sbjct: 61 SIMWKKIKNKISFCTIVRSLPLLMGSCTHQTRCQLKS 97

BLAST of PI0012276 vs. ExPASy TrEMBL
Match: A0A6J1HAB1 (pentatricopeptide repeat-containing protein At4g02750-like OS=Cucurbita moschata OX=3662 GN=LOC111461023 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.2e-14
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL 45
           MKNK VAKEPG SWIQI+C + YFLTKDDSHDEIEEIHSCLKVL
Sbjct: 770 MKNKEVAKEPGASWIQIRCRIHYFLTKDDSHDEIEEIHSCLKVL 813

BLAST of PI0012276 vs. ExPASy TrEMBL
Match: A0A6J1KVF3 (pentatricopeptide repeat-containing protein At4g02750-like OS=Cucurbita maxima OX=3661 GN=LOC111497943 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-13
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL 45
           MKNK VAKEPG SWIQI+C + YF+TKDDSHDEI+EIHSCLKVL
Sbjct: 770 MKNKEVAKEPGASWIQIRCRIHYFITKDDSHDEIKEIHSCLKVL 813

BLAST of PI0012276 vs. ExPASy TrEMBL
Match: A0A6J1D5R5 (pentatricopeptide repeat-containing protein At4g02750-like OS=Momordica charantia OX=3673 GN=LOC111017187 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL 45
           M NKGV KEPG+SWIQIK  V +FLTKDDSHDEI EIHSCLK L
Sbjct: 770 MINKGVTKEPGISWIQIKGRVHFFLTKDDSHDEIGEIHSCLKAL 813

BLAST of PI0012276 vs. ExPASy TrEMBL
Match: A0A2N9IF76 (DYW_deaminase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50980 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.2e-06
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL 45
           MK++GV KEPG+SWIQIK  + YFL  D++H+EI EIH  LK L
Sbjct: 723 MKDRGVNKEPGISWIQIKNKLHYFLIGDNTHNEIGEIHLTLKEL 766

BLAST of PI0012276 vs. NCBI nr
Match: KGN45242.1 (hypothetical protein Csa_015822 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 63/97 (64.95%), Postives = 70/97 (72.16%), Query Frame = 0

Query: 1  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIE------------EIHSCLKVLQILC 60
          MK+KGVAKEPGVSWIQ+KC V YFLTKDD HD+IE              H  L  +QILC
Sbjct: 1  MKDKGVAKEPGVSWIQMKCRVHYFLTKDDCHDKIEGDSFMLEGVVKTSHHGRLCQIQILC 60

Query: 61 SVMWKN-KNKMSFGTIVRSLSLLMGSCTHQTRYRFKS 85
          S+MWK  KNK+SF TIVRSL LLMGSCTHQTR + KS
Sbjct: 61 SIMWKKIKNKISFCTIVRSLPLLMGSCTHQTRCQLKS 97

BLAST of PI0012276 vs. NCBI nr
Match: KAG6593380.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.0 bits (214), Expect = 8.2e-14
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL 45
           MKNK VAKEPG SWIQI+C V YFLTKDDSHDEIEEIHSCLKVL
Sbjct: 770 MKNKEVAKEPGASWIQIRCRVHYFLTKDDSHDEIEEIHSCLKVL 813

BLAST of PI0012276 vs. NCBI nr
Match: KAG7025727.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.0 bits (214), Expect = 8.2e-14
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL 45
           MKNK VAKEPG SWIQI+C V YFLTKDDSHDEIEEIHSCLKVL
Sbjct: 846 MKNKEVAKEPGASWIQIRCRVHYFLTKDDSHDEIEEIHSCLKVL 889

BLAST of PI0012276 vs. NCBI nr
Match: XP_023515085.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL 45
           MKNK VAKEPG SWIQI+C + YFLTKDDSHDEIEEIHSCLKVL
Sbjct: 770 MKNKEVAKEPGASWIQIRCRIHYFLTKDDSHDEIEEIHSCLKVL 813

BLAST of PI0012276 vs. NCBI nr
Match: XP_022960219.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata])

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL 45
           MKNK VAKEPG SWIQI+C + YFLTKDDSHDEIEEIHSCLKVL
Sbjct: 770 MKNKEVAKEPGASWIQIRCRIHYFLTKDDSHDEIEEIHSCLKVL 813

BLAST of PI0012276 vs. TAIR 10
Match: AT2G13600.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 3.9e-06
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL 45
           M+ +GV K+PG SWI+I+     F+ KD SH   ++IHS L +L
Sbjct: 621 MRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDIL 664

BLAST of PI0012276 vs. TAIR 10
Match: AT5G39680.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 5.1e-06
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLK 43
           M N+GV KEPGVSWI I+     FL +D+ H EI  I++ +K
Sbjct: 567 MNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVK 608

BLAST of PI0012276 vs. TAIR 10
Match: AT4G13650.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 19/38 (50.00%), Postives = 24/38 (63.16%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIH 39
           MK KGV KEPG SWI++K  +  F   D +H   +EIH
Sbjct: 921 MKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIH 958

BLAST of PI0012276 vs. TAIR 10
Match: AT2G35030.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.3e-05
Identity = 23/59 (38.98%), Postives = 33/59 (55.93%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVLQILCSVMWKNKNKMS 60
           MK KG+ K+PG SW+++      F+  D SH + E + S   +L  L + M KNKN  S
Sbjct: 562 MKEKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFEALDS---ILSDLRNKMRKNKNVTS 617

BLAST of PI0012276 vs. TAIR 10
Match: AT4G39530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.3e-05
Identity = 22/46 (47.83%), Postives = 28/46 (60.87%), Query Frame = 0

Query: 1   MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVLQI 47
           MK +GV KEPG SWI I   V  FL+KD SH +  +I+  L  L +
Sbjct: 783 MKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLLV 828

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SIT75.5e-0545.45Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX... [more]
Q9FK937.2e-0550.00Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana OX... [more]
Q9SVP72.7e-0450.00Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX... [more]
O647666.1e-0438.98Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidop... [more]
Q9SVA56.1e-0447.83Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A0A0KA265.5e-2464.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432230 PE=4 SV=1[more]
A0A6J1HAB15.2e-1486.36pentatricopeptide repeat-containing protein At4g02750-like OS=Cucurbita moschata... [more]
A0A6J1KVF32.6e-1381.82pentatricopeptide repeat-containing protein At4g02750-like OS=Cucurbita maxima O... [more]
A0A6J1D5R53.1e-1179.55pentatricopeptide repeat-containing protein At4g02750-like OS=Momordica charanti... [more]
A0A2N9IF765.2e-0661.36DYW_deaminase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS... [more]
Match NameE-valueIdentityDescription
KGN45242.11.1e-2364.95hypothetical protein Csa_015822 [Cucumis sativus][more]
KAG6593380.18.2e-1488.64Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG7025727.18.2e-1488.64Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_023515085.11.1e-1386.36pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp... [more]
XP_022960219.11.1e-1386.36pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT2G13600.13.9e-0645.45Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G39680.15.1e-0650.00Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G13650.12.0e-0550.00Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G35030.14.3e-0538.98Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G39530.14.3e-0547.83Tetratricopeptide repeat (TPR)-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012276.1PI0012276.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding