PI0012275 (gene) Melon (PI 482460) v1

Overview


Name	PI0012275
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pol protein
Location	chr08: 5091791 .. 5092030 (+)
RNA-Seq Expression	PI0012275
Synteny	PI0012275

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGGAAATACGTGGCTGACCCATCTCATGTTTTGGATTATGAACCTTTGGAGATTGATGAGAATTTGAGCTACGTGGAGCACCCAGTTGAGGTTTTGGCCAAGGAAGTAAAGACGCTTCGTAACCGGGAAATTGCCTTAGTAAAGGTCCTTTGGCGCAATCACCGGATGGAAGAAGCCACATGGGAGCGGAAGGATGACATGAGAGCTCGTTACCCGGAGTTGTTCGAGGGTTAG

mRNA sequence

ATGTTGAGGAAATACGTGGCTGACCCATCTCATGTTTTGGATTATGAACCTTTGGAGATTGATGAGAATTTGAGCTACGTGGAGCACCCAGTTGAGGTTTTGGCCAAGGAAGTAAAGACGCTTCGTAACCGGGAAATTGCCTTAGTAAAGGTCCTTTGGCGCAATCACCGGATGGAAGAAGCCACATGGGAGCGGAAGGATGACATGAGAGCTCGTTACCCGGAGTTGTTCGAGGGTTAG

Coding sequence (CDS)

ATGTTGAGGAAATACGTGGCTGACCCATCTCATGTTTTGGATTATGAACCTTTGGAGATTGATGAGAATTTGAGCTACGTGGAGCACCCAGTTGAGGTTTTGGCCAAGGAAGTAAAGACGCTTCGTAACCGGGAAATTGCCTTAGTAAAGGTCCTTTGGCGCAATCACCGGATGGAAGAAGCCACATGGGAGCGGAAGGATGACATGAGAGCTCGTTACCCGGAGTTGTTCGAGGGTTAG

Protein sequence

MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG

Homology

[Close]

BLAST of PI0012275 vs. ExPASy TrEMBL
Match: A0A5A7VIQ0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15212G00010 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.1e-33
Identity = 70/79 (88.61%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEE 60
           MLRKYV DPSHV+DYEPLEIDENLSYVE PVEVLA+EVKTLRN+EI+LVKVLWRNHR+EE
Sbjct: 284 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEISLVKVLWRNHRVEE 343

Query: 61  ATWERKDDMRARYPELFEG 80
           ATWER+DDMR+RYPELFEG
Sbjct: 344 ATWEREDDMRSRYPELFEG 362

[Close]

BLAST of PI0012275 vs. ExPASy TrEMBL
Match: A0A5A7TM23 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33643G00010 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEE 60
          MLRKYV DPSHV+DYEPLEIDENLSYVE PVEVLA+EVKTLRN+EI LVKVLWRNHR+EE
Sbjct: 1  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60

Query: 61 ATWERKDDMRARYPELFEG 80
          ATWER+DDMR RYPELFEG
Sbjct: 61 ATWEREDDMRFRYPELFEG 79

[Close]

BLAST of PI0012275 vs. ExPASy TrEMBL
Match: A0A5A7T8G8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00730 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 69/79 (87.34%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1    MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEE 60
            MLRKYV DPSHV+DYEPLEIDENLSY E PVEVLA+EVKTLRN+EI LVKVLWRNHR+EE
Sbjct: 1196 MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1255

Query: 61   ATWERKDDMRARYPELFEG 80
            ATWER+DDMR+RYPELFEG
Sbjct: 1256 ATWEREDDMRSRYPELFEG 1274

[Close]

BLAST of PI0012275 vs. ExPASy TrEMBL
Match: A0A5A7TGS7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00240 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 69/79 (87.34%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1    MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEE 60
            MLRKYV DPSHV+DYEPLEIDENLSY E PVEVLA+EVKTLRN+EI LVKVLWRNHR+EE
Sbjct: 1596 MLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1655

Query: 61   ATWERKDDMRARYPELFEG 80
            ATWER+DDMR+RYPELFEG
Sbjct: 1656 ATWEREDDMRSRYPELFEG 1674

[Close]

BLAST of PI0012275 vs. ExPASy TrEMBL
Match: A0A5A7TGX4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00100 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 69/79 (87.34%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1    MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEE 60
            MLRKYV DPSHV+DYEPLEIDENLSY E PVEVLA+EVKTLRN+EI LVKVLWRNHR+EE
Sbjct: 1474 MLRKYVPDPSHVVDYEPLEIDENLSYAEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1533

Query: 61   ATWERKDDMRARYPELFEG 80
            ATWER+DDMR+RYPELFEG
Sbjct: 1534 ATWEREDDMRSRYPELFEG 1552

[Close]

BLAST of PI0012275 vs. NCBI nr
Match: KAA0068212.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 70/79 (88.61%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEE 60
           MLRKYV DPSHV+DYEPLEIDENLSYVE PVEVLA+EVKTLRN+EI+LVKVLWRNHR+EE
Sbjct: 284 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEISLVKVLWRNHRVEE 343

Query: 61  ATWERKDDMRARYPELFEG 80
           ATWER+DDMR+RYPELFEG
Sbjct: 344 ATWEREDDMRSRYPELFEG 362

[Close]

BLAST of PI0012275 vs. NCBI nr
Match: KAA0043066.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 4.8e-32
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEE 60
          MLRKYV DPSHV+DYEPLEIDENLSYVE PVEVLA+EVKTLRN+EI LVKVLWRNHR+EE
Sbjct: 1  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60

Query: 61 ATWERKDDMRARYPELFEG 80
          ATWER+DDMR RYPELFEG
Sbjct: 61 ATWEREDDMRFRYPELFEG 79

[Close]

BLAST of PI0012275 vs. NCBI nr
Match: KAA0037901.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 6.3e-32
Identity = 69/79 (87.34%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1    MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEE 60
            MLRKYV DPSHV+DYEPLEIDENLSY E PVEVLA+EVKTLRN+EI LVKVLWRNHR+EE
Sbjct: 1196 MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1255

Query: 61   ATWERKDDMRARYPELFEG 80
            ATWER+DDMR+RYPELFEG
Sbjct: 1256 ATWEREDDMRSRYPELFEG 1274

[Close]

BLAST of PI0012275 vs. NCBI nr
Match: KAA0059750.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 6.3e-32
Identity = 68/79 (86.08%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEE 60
           MLRKYV DPSHV+DYEPLEIDENLSYVE P+EVLA+EVKTLRN+EI LVKVLWRNHR+EE
Sbjct: 51  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPIEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110

Query: 61  ATWERKDDMRARYPELFEG 80
           ATWER+DDMR+RYP+LFEG
Sbjct: 111 ATWEREDDMRSRYPDLFEG 129

[Close]

BLAST of PI0012275 vs. NCBI nr
Match: KAA0040695.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 6.3e-32
Identity = 69/79 (87.34%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1    MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEE 60
            MLRKYV DPSHV+DYEPLEIDENLSY E PVEVLA+EVKTLRN+EI LVKVLWRNHR+EE
Sbjct: 1474 MLRKYVPDPSHVVDYEPLEIDENLSYAEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1533

Query: 61   ATWERKDDMRARYPELFEG 80
            ATWER+DDMR+RYPELFEG
Sbjct: 1534 ATWEREDDMRSRYPELFEG 1552

The following BLAST results are available for this feature:

BLAST of PI0012275 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012275 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIQ0	6.1e-33	88.61	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15212G00010 ...	[more]
A0A5A7TM23	2.3e-32	88.61	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33643G00010 ...	[more]
A0A5A7T8G8	3.0e-32	87.34	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36...	[more]
A0A5A7TGS7	3.0e-32	87.34	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]
A0A5A7TGX4	3.0e-32	87.34	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold52...	[more]

BLAST of PI0012275 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068212.1	1.3e-32	88.61	pol protein [Cucumis melo var. makuwa]	[more]
KAA0043066.1	4.8e-32	88.61	pol protein [Cucumis melo var. makuwa]	[more]
KAA0037901.1	6.3e-32	87.34	pol protein [Cucumis melo var. makuwa]	[more]
KAA0059750.1	6.3e-32	86.08	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040695.1	6.3e-32	87.34	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0012275 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..77
None	No IPR available	PANTHER	PTHR46148:SF33	OS05G0296332 PROTEIN	coord: 1..77
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 10..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012275.1	PI0012275.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding