Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAGAGGATCAGTCGGTAAATCCATATGCTAGGAGAGTGATGGAAGAAGAATTATCTGATCGCCTGATGCAAAGATTGATAGATGGGTTGTCAAAAGATCAGGAGAAGAAGTATGGAATAGAACAGCTCAAGGCGTTAGGAGCTAAAGAATTTTCAGGGGTAGTAGAACCTGAGCAGACGGAGAAATGGTTAAGAACGTTAGAGAAGTGTCTTAGGGTAATGGAGTGCCTAGAAGAAAAGAAGGTAAATTACCAGTTTTCTTACTCCAAGAAGAAGCAAAAGATTGATGGGTGTTAGAAGAAGGTAGACGAGGTGAGGTAAGTTTGGACGAGTTTAAGGCAGGATTCAATGAGATGTATTTCTCATAGTCCTATAGAGATGCGAGGCAAGATGAATTTTTGCACCTAGAGCAAGGTGAGCTCACAGTTGCAGAATAGAAGAAGTTTATGGAGTTAATCAAGTATTCGATTGTGATGGTGGCTACTGAAAGAGATAGGTGCGACATTTTGAAGCAGGATTAAGGAGTGAGATTCGGACACTAGCTACAGCTCTTGTTGCACGGTGTAGTTACTTTAAGCTGATTGAGGTAGCATTGCGTATAGAGAAAAGTTTGGTAAAAGGGAAGAAGGCGATGACATCTACGTTTAGTGGAGAAGAGGAAAGAAAGAGTGTGAATTAG
mRNA sequence
ATGGATTCAGAGGATCAGTCGGTAAATCCATATGCTAGGAGAGTGATGGAAGAAGAATTATCTGATCGCCTGATGCAAAGATTGATAGATGGGTTGTCAAAAGATCAGGAGAAGAAGTATGGAATAGAACAGCTCAAGGCGTTAGGAGCTAAAGAATTTTCAGGGGTAGTAGAACCTGAGCAGACGGAGAAATGGTTAAGAACGTTAGAGAAGTGTCTTAGGGTAATGGAGTGCCTAGAAGAAAAGAAGGTGCGACATTTTGAAGCAGGATTAAGGAGTGAGATTCGGACACTAGCTACAGCTCTTGTTGCACGGTGTAGTTACTTTAAGCTGATTGAGGTAGCATTGCGTATAGAGAAAAGTTTGGTAAAAGGGAAGAAGGCGATGACATCTACGTTTAGTGGAGAAGAGGAAAGAAAGAGTGTGAATTAG
Coding sequence (CDS)
ATGGATTCAGAGGATCAGTCGGTAAATCCATATGCTAGGAGAGTGATGGAAGAAGAATTATCTGATCGCCTGATGCAAAGATTGATAGATGGGTTGTCAAAAGATCAGGAGAAGAAGTATGGAATAGAACAGCTCAAGGCGTTAGGAGCTAAAGAATTTTCAGGGGTAGTAGAACCTGAGCAGACGGAGAAATGGTTAAGAACGTTAGAGAAGTGTCTTAGGGTAATGGAGTGCCTAGAAGAAAAGAAGGTGCGACATTTTGAAGCAGGATTAAGGAGTGAGATTCGGACACTAGCTACAGCTCTTGTTGCACGGTGTAGTTACTTTAAGCTGATTGAGGTAGCATTGCGTATAGAGAAAAGTTTGGTAAAAGGGAAGAAGGCGATGACATCTACGTTTAGTGGAGAAGAGGAAAGAAAGAGTGTGAATTAG
Protein sequence
MDSEDQSVNPYARRVMEEELSDRLMQRLIDGLSKDQEKKYGIEQLKALGAKEFSGVVEPEQTEKWLRTLEKCLRVMECLEEKKVRHFEAGLRSEIRTLATALVARCSYFKLIEVALRIEKSLVKGKKAMTSTFSGEEERKSVN
Homology
BLAST of PI0012263 vs. ExPASy TrEMBL
Match:
A0A0A0LI31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)
HSP 1 Score: 94.7 bits (234), Expect = 3.2e-16
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 0
Query: 1 MDSEDQSVNPYARRVMEEELSDRLMQRLIDGLSKDQEKKYGIEQLKALGAKEFSGVVEPE 60
+DSE ++NP ARR EE L DR QRLI+ L++ +K +GIE++KALGA EF+G+ E
Sbjct: 5 IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64
Query: 61 QTEKWLRTLEKCLRVMECLEEKKV 85
+ EKW+RTLEKC RVM+C +E++V
Sbjct: 65 EAEKWIRTLEKCFRVMQCPKERRV 88
BLAST of PI0012263 vs. ExPASy TrEMBL
Match:
A0A0A0KCZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127310 PE=4 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 1.6e-15
Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 0
Query: 24 LMQRLIDGLSKDQEKKYGIEQLKALGAKEFSGVVEPEQTEKWLRTLEKCLRVMECLEEKK 83
L + LI+ LS++ EKK+GIE+LKAL A+EF+ +E EQ EKW+RTLEK RV++C EE K
Sbjct: 4 LPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESK 63
Query: 84 VRHFEAGLRSEIRTLATALVARCSYFKLIEVALRIEKSLVKGKKAMT 131
V F L+ + + AL RC Y KL++VALR E+SL GK++ T
Sbjct: 64 V-EFTVLLQCK-KEQKIALAMRCDYAKLVDVALRAERSL-GGKRSST 107
BLAST of PI0012263 vs. ExPASy TrEMBL
Match:
A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)
HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 64/184 (34.78%), Postives = 82/184 (44.57%), Query Frame = 0
Query: 2 DSEDQSVNPYARRVMEEELSDRLMQRLIDGL---SKDQEKKYGIEQLKALGAKEFSGVVE 61
+S+ +S P +EE+L DRL QRL+ G+ D EKKYG E+LKALGA F+G
Sbjct: 27 ESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTN 86
Query: 62 PEQTEKWLRTLEKCLRVMECLEEKKV---------------------------------- 121
P E WL +EKC RV LE++KV
Sbjct: 87 PTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGTMTVAEYE 146
Query: 122 ---------------------RHFEAGLRSEIRTLATALVARCSYFKLIEVALRIEKSLV 128
+ FE GLR EIRT TA + KL+EVALR+EKSL
Sbjct: 147 KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN 206
BLAST of PI0012263 vs. ExPASy TrEMBL
Match:
A0A5A7ULX5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006310 PE=4 SV=1)
HSP 1 Score: 88.6 bits (218), Expect = 2.3e-14
Identity = 60/161 (37.27%), Postives = 82/161 (50.93%), Query Frame = 0
Query: 1 MDSED---QSVNPYARRVMEEELSDRLMQRLIDGL---SKDQEKKYGIEQLKALGAKEFS 60
M+SE+ +S P+ +EE+L DRL QR + + D EKK+ IE+LKALG+ F+
Sbjct: 23 MESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFA 82
Query: 61 GVVEPEQTEKWLRTLEKCLRVMECLEEKKV----------------------------RH 120
P E WL +EKC RVM C E++KV +
Sbjct: 83 RTTNPANAEAWLTLIEKCFRVMRCSEDRKVELSAFLLQNGAEDWWHDRNVIKDEAERCKR 142
Query: 121 FEAGLRSEIRTLATALVARCSYFKLIEVALRIEKSLVKGKK 128
FE GLR +IRTL TA KL++ ALR+EKSL + K+
Sbjct: 143 FEEGLREKIRTLVTACADSNDLSKLVKGALRVEKSLNESKR 183
BLAST of PI0012263 vs. ExPASy TrEMBL
Match:
A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)
HSP 1 Score: 86.7 bits (213), Expect = 8.8e-14
Identity = 64/191 (33.51%), Postives = 81/191 (42.41%), Query Frame = 0
Query: 2 DSEDQSVNPYARRVMEEELSDRLMQRLIDGL---SKDQEKKYGIEQLKALGAKEFSGVVE 61
+S+ +S P+ MEE+L DRL QRLI G+ D EKKYGIE+LKALGA F G
Sbjct: 46 ESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTN 105
Query: 62 PEQTEKWLRTLEKCLRVMECLEEKKV---------------------------------- 121
P E WL +EKC RV C E++KV
Sbjct: 106 PADAEAWLTLIEKCFRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIRS 165
Query: 122 ----------------------------RHFEAGLRSEIRTLATALVARCSYFKLIEVAL 128
+ FE GL+ EIRT T + KL+E AL
Sbjct: 166 MTVTKYEKKYTELSKYATRVIEDEVERCKRFEEGLQEEIRTPVTTCADWNDFSKLVEAAL 225
BLAST of PI0012263 vs. NCBI nr
Match:
KGN61535.1 (hypothetical protein Csa_006696 [Cucumis sativus])
HSP 1 Score: 94.7 bits (234), Expect = 6.7e-16
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 0
Query: 1 MDSEDQSVNPYARRVMEEELSDRLMQRLIDGLSKDQEKKYGIEQLKALGAKEFSGVVEPE 60
+DSE ++NP ARR EE L DR QRLI+ L++ +K +GIE++KALGA EF+G+ E
Sbjct: 5 IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64
Query: 61 QTEKWLRTLEKCLRVMECLEEKKV 85
+ EKW+RTLEKC RVM+C +E++V
Sbjct: 65 EAEKWIRTLEKCFRVMQCPKERRV 88
BLAST of PI0012263 vs. NCBI nr
Match:
KGN46719.1 (hypothetical protein Csa_020815 [Cucumis sativus])
HSP 1 Score: 92.4 bits (228), Expect = 3.3e-15
Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 0
Query: 24 LMQRLIDGLSKDQEKKYGIEQLKALGAKEFSGVVEPEQTEKWLRTLEKCLRVMECLEEKK 83
L + LI+ LS++ EKK+GIE+LKAL A+EF+ +E EQ EKW+RTLEK RV++C EE K
Sbjct: 4 LPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESK 63
Query: 84 VRHFEAGLRSEIRTLATALVARCSYFKLIEVALRIEKSLVKGKKAMT 131
V F L+ + + AL RC Y KL++VALR E+SL GK++ T
Sbjct: 64 V-EFTVLLQCK-KEQKIALAMRCDYAKLVDVALRAERSL-GGKRSST 107
BLAST of PI0012263 vs. NCBI nr
Match:
KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 89.4 bits (220), Expect = 2.8e-14
Identity = 64/184 (34.78%), Postives = 82/184 (44.57%), Query Frame = 0
Query: 2 DSEDQSVNPYARRVMEEELSDRLMQRLIDGL---SKDQEKKYGIEQLKALGAKEFSGVVE 61
+S+ +S P +EE+L DRL QRL+ G+ D EKKYG E+LKALGA F+G
Sbjct: 27 ESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTN 86
Query: 62 PEQTEKWLRTLEKCLRVMECLEEKKV---------------------------------- 121
P E WL +EKC RV LE++KV
Sbjct: 87 PTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGTMTVAEYE 146
Query: 122 ---------------------RHFEAGLRSEIRTLATALVARCSYFKLIEVALRIEKSLV 128
+ FE GLR EIRT TA + KL+EVALR+EKSL
Sbjct: 147 KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN 206
BLAST of PI0012263 vs. NCBI nr
Match:
KAA0056913.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYJ99413.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 88.6 bits (218), Expect = 4.8e-14
Identity = 60/161 (37.27%), Postives = 82/161 (50.93%), Query Frame = 0
Query: 1 MDSED---QSVNPYARRVMEEELSDRLMQRLIDGL---SKDQEKKYGIEQLKALGAKEFS 60
M+SE+ +S P+ +EE+L DRL QR + + D EKK+ IE+LKALG+ F+
Sbjct: 23 MESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFA 82
Query: 61 GVVEPEQTEKWLRTLEKCLRVMECLEEKKV----------------------------RH 120
P E WL +EKC RVM C E++KV +
Sbjct: 83 RTTNPANAEAWLTLIEKCFRVMRCSEDRKVELSAFLLQNGAEDWWHDRNVIKDEAERCKR 142
Query: 121 FEAGLRSEIRTLATALVARCSYFKLIEVALRIEKSLVKGKK 128
FE GLR +IRTL TA KL++ ALR+EKSL + K+
Sbjct: 143 FEEGLREKIRTLVTACADSNDLSKLVKGALRVEKSLNESKR 183
BLAST of PI0012263 vs. NCBI nr
Match:
KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 86.7 bits (213), Expect = 1.8e-13
Identity = 64/191 (33.51%), Postives = 81/191 (42.41%), Query Frame = 0
Query: 2 DSEDQSVNPYARRVMEEELSDRLMQRLIDGL---SKDQEKKYGIEQLKALGAKEFSGVVE 61
+S+ +S P+ MEE+L DRL QRLI G+ D EKKYGIE+LKALGA F G
Sbjct: 46 ESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTN 105
Query: 62 PEQTEKWLRTLEKCLRVMECLEEKKV---------------------------------- 121
P E WL +EKC RV C E++KV
Sbjct: 106 PADAEAWLTLIEKCFRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIRS 165
Query: 122 ----------------------------RHFEAGLRSEIRTLATALVARCSYFKLIEVAL 128
+ FE GL+ EIRT T + KL+E AL
Sbjct: 166 MTVTKYEKKYTELSKYATRVIEDEVERCKRFEEGLQEEIRTPVTTCADWNDFSKLVEAAL 225
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LI31 | 3.2e-16 | 54.76 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1 | [more] |
A0A0A0KCZ4 | 1.6e-15 | 51.40 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127310 PE=4 SV=1 | [more] |
A0A5A7T1M0 | 1.4e-14 | 34.78 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... | [more] |
A0A5A7ULX5 | 2.3e-14 | 37.27 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A5D3DES5 | 8.8e-14 | 33.51 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
Match Name | E-value | Identity | Description | |
KGN61535.1 | 6.7e-16 | 54.76 | hypothetical protein Csa_006696 [Cucumis sativus] | [more] |
KGN46719.1 | 3.3e-15 | 51.40 | hypothetical protein Csa_020815 [Cucumis sativus] | [more] |
KAA0036813.1 | 2.8e-14 | 34.78 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
KAA0056913.1 | 4.8e-14 | 37.27 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYJ99413.1 D... | [more] |
KAA0035225.1 | 1.8e-13 | 33.51 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D... | [more] |
Match Name | E-value | Identity | Description | |