PI0012263 (gene) Melon (PI 482460) v1

Overview
NamePI0012263
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr03: 15684886 .. 15685570 (-)
RNA-Seq ExpressionPI0012263
SyntenyPI0012263
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAGAGGATCAGTCGGTAAATCCATATGCTAGGAGAGTGATGGAAGAAGAATTATCTGATCGCCTGATGCAAAGATTGATAGATGGGTTGTCAAAAGATCAGGAGAAGAAGTATGGAATAGAACAGCTCAAGGCGTTAGGAGCTAAAGAATTTTCAGGGGTAGTAGAACCTGAGCAGACGGAGAAATGGTTAAGAACGTTAGAGAAGTGTCTTAGGGTAATGGAGTGCCTAGAAGAAAAGAAGGTAAATTACCAGTTTTCTTACTCCAAGAAGAAGCAAAAGATTGATGGGTGTTAGAAGAAGGTAGACGAGGTGAGGTAAGTTTGGACGAGTTTAAGGCAGGATTCAATGAGATGTATTTCTCATAGTCCTATAGAGATGCGAGGCAAGATGAATTTTTGCACCTAGAGCAAGGTGAGCTCACAGTTGCAGAATAGAAGAAGTTTATGGAGTTAATCAAGTATTCGATTGTGATGGTGGCTACTGAAAGAGATAGGTGCGACATTTTGAAGCAGGATTAAGGAGTGAGATTCGGACACTAGCTACAGCTCTTGTTGCACGGTGTAGTTACTTTAAGCTGATTGAGGTAGCATTGCGTATAGAGAAAAGTTTGGTAAAAGGGAAGAAGGCGATGACATCTACGTTTAGTGGAGAAGAGGAAAGAAAGAGTGTGAATTAG

mRNA sequence

ATGGATTCAGAGGATCAGTCGGTAAATCCATATGCTAGGAGAGTGATGGAAGAAGAATTATCTGATCGCCTGATGCAAAGATTGATAGATGGGTTGTCAAAAGATCAGGAGAAGAAGTATGGAATAGAACAGCTCAAGGCGTTAGGAGCTAAAGAATTTTCAGGGGTAGTAGAACCTGAGCAGACGGAGAAATGGTTAAGAACGTTAGAGAAGTGTCTTAGGGTAATGGAGTGCCTAGAAGAAAAGAAGGTGCGACATTTTGAAGCAGGATTAAGGAGTGAGATTCGGACACTAGCTACAGCTCTTGTTGCACGGTGTAGTTACTTTAAGCTGATTGAGGTAGCATTGCGTATAGAGAAAAGTTTGGTAAAAGGGAAGAAGGCGATGACATCTACGTTTAGTGGAGAAGAGGAAAGAAAGAGTGTGAATTAG

Coding sequence (CDS)

ATGGATTCAGAGGATCAGTCGGTAAATCCATATGCTAGGAGAGTGATGGAAGAAGAATTATCTGATCGCCTGATGCAAAGATTGATAGATGGGTTGTCAAAAGATCAGGAGAAGAAGTATGGAATAGAACAGCTCAAGGCGTTAGGAGCTAAAGAATTTTCAGGGGTAGTAGAACCTGAGCAGACGGAGAAATGGTTAAGAACGTTAGAGAAGTGTCTTAGGGTAATGGAGTGCCTAGAAGAAAAGAAGGTGCGACATTTTGAAGCAGGATTAAGGAGTGAGATTCGGACACTAGCTACAGCTCTTGTTGCACGGTGTAGTTACTTTAAGCTGATTGAGGTAGCATTGCGTATAGAGAAAAGTTTGGTAAAAGGGAAGAAGGCGATGACATCTACGTTTAGTGGAGAAGAGGAAAGAAAGAGTGTGAATTAG

Protein sequence

MDSEDQSVNPYARRVMEEELSDRLMQRLIDGLSKDQEKKYGIEQLKALGAKEFSGVVEPEQTEKWLRTLEKCLRVMECLEEKKVRHFEAGLRSEIRTLATALVARCSYFKLIEVALRIEKSLVKGKKAMTSTFSGEEERKSVN
Homology
BLAST of PI0012263 vs. ExPASy TrEMBL
Match: A0A0A0LI31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.2e-16
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 0

Query: 1  MDSEDQSVNPYARRVMEEELSDRLMQRLIDGLSKDQEKKYGIEQLKALGAKEFSGVVEPE 60
          +DSE  ++NP ARR  EE L DR  QRLI+ L++  +K +GIE++KALGA EF+G+   E
Sbjct: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64

Query: 61 QTEKWLRTLEKCLRVMECLEEKKV 85
          + EKW+RTLEKC RVM+C +E++V
Sbjct: 65 EAEKWIRTLEKCFRVMQCPKERRV 88

BLAST of PI0012263 vs. ExPASy TrEMBL
Match: A0A0A0KCZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127310 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-15
Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 0

Query: 24  LMQRLIDGLSKDQEKKYGIEQLKALGAKEFSGVVEPEQTEKWLRTLEKCLRVMECLEEKK 83
           L + LI+ LS++ EKK+GIE+LKAL A+EF+  +E EQ EKW+RTLEK  RV++C EE K
Sbjct: 4   LPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESK 63

Query: 84  VRHFEAGLRSEIRTLATALVARCSYFKLIEVALRIEKSLVKGKKAMT 131
           V  F   L+ + +    AL  RC Y KL++VALR E+SL  GK++ T
Sbjct: 64  V-EFTVLLQCK-KEQKIALAMRCDYAKLVDVALRAERSL-GGKRSST 107

BLAST of PI0012263 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 64/184 (34.78%), Postives = 82/184 (44.57%), Query Frame = 0

Query: 2   DSEDQSVNPYARRVMEEELSDRLMQRLIDGL---SKDQEKKYGIEQLKALGAKEFSGVVE 61
           +S+ +S  P     +EE+L DRL QRL+ G+     D EKKYG E+LKALGA  F+G   
Sbjct: 27  ESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTN 86

Query: 62  PEQTEKWLRTLEKCLRVMECLEEKKV---------------------------------- 121
           P   E WL  +EKC RV   LE++KV                                  
Sbjct: 87  PTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGTMTVAEYE 146

Query: 122 ---------------------RHFEAGLRSEIRTLATALVARCSYFKLIEVALRIEKSLV 128
                                + FE GLR EIRT  TA      + KL+EVALR+EKSL 
Sbjct: 147 KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN 206

BLAST of PI0012263 vs. ExPASy TrEMBL
Match: A0A5A7ULX5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006310 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-14
Identity = 60/161 (37.27%), Postives = 82/161 (50.93%), Query Frame = 0

Query: 1   MDSED---QSVNPYARRVMEEELSDRLMQRLIDGL---SKDQEKKYGIEQLKALGAKEFS 60
           M+SE+   +S  P+    +EE+L DRL QR +  +     D EKK+ IE+LKALG+  F+
Sbjct: 23  MESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFA 82

Query: 61  GVVEPEQTEKWLRTLEKCLRVMECLEEKKV----------------------------RH 120
               P   E WL  +EKC RVM C E++KV                            + 
Sbjct: 83  RTTNPANAEAWLTLIEKCFRVMRCSEDRKVELSAFLLQNGAEDWWHDRNVIKDEAERCKR 142

Query: 121 FEAGLRSEIRTLATALVARCSYFKLIEVALRIEKSLVKGKK 128
           FE GLR +IRTL TA        KL++ ALR+EKSL + K+
Sbjct: 143 FEEGLREKIRTLVTACADSNDLSKLVKGALRVEKSLNESKR 183

BLAST of PI0012263 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 8.8e-14
Identity = 64/191 (33.51%), Postives = 81/191 (42.41%), Query Frame = 0

Query: 2   DSEDQSVNPYARRVMEEELSDRLMQRLIDGL---SKDQEKKYGIEQLKALGAKEFSGVVE 61
           +S+ +S  P+    MEE+L DRL QRLI G+     D EKKYGIE+LKALGA  F G   
Sbjct: 46  ESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTN 105

Query: 62  PEQTEKWLRTLEKCLRVMECLEEKKV---------------------------------- 121
           P   E WL  +EKC RV  C E++KV                                  
Sbjct: 106 PADAEAWLTLIEKCFRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIRS 165

Query: 122 ----------------------------RHFEAGLRSEIRTLATALVARCSYFKLIEVAL 128
                                       + FE GL+ EIRT  T       + KL+E AL
Sbjct: 166 MTVTKYEKKYTELSKYATRVIEDEVERCKRFEEGLQEEIRTPVTTCADWNDFSKLVEAAL 225

BLAST of PI0012263 vs. NCBI nr
Match: KGN61535.1 (hypothetical protein Csa_006696 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 6.7e-16
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 0

Query: 1  MDSEDQSVNPYARRVMEEELSDRLMQRLIDGLSKDQEKKYGIEQLKALGAKEFSGVVEPE 60
          +DSE  ++NP ARR  EE L DR  QRLI+ L++  +K +GIE++KALGA EF+G+   E
Sbjct: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64

Query: 61 QTEKWLRTLEKCLRVMECLEEKKV 85
          + EKW+RTLEKC RVM+C +E++V
Sbjct: 65 EAEKWIRTLEKCFRVMQCPKERRV 88

BLAST of PI0012263 vs. NCBI nr
Match: KGN46719.1 (hypothetical protein Csa_020815 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-15
Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 0

Query: 24  LMQRLIDGLSKDQEKKYGIEQLKALGAKEFSGVVEPEQTEKWLRTLEKCLRVMECLEEKK 83
           L + LI+ LS++ EKK+GIE+LKAL A+EF+  +E EQ EKW+RTLEK  RV++C EE K
Sbjct: 4   LPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESK 63

Query: 84  VRHFEAGLRSEIRTLATALVARCSYFKLIEVALRIEKSLVKGKKAMT 131
           V  F   L+ + +    AL  RC Y KL++VALR E+SL  GK++ T
Sbjct: 64  V-EFTVLLQCK-KEQKIALAMRCDYAKLVDVALRAERSL-GGKRSST 107

BLAST of PI0012263 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-14
Identity = 64/184 (34.78%), Postives = 82/184 (44.57%), Query Frame = 0

Query: 2   DSEDQSVNPYARRVMEEELSDRLMQRLIDGL---SKDQEKKYGIEQLKALGAKEFSGVVE 61
           +S+ +S  P     +EE+L DRL QRL+ G+     D EKKYG E+LKALGA  F+G   
Sbjct: 27  ESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTN 86

Query: 62  PEQTEKWLRTLEKCLRVMECLEEKKV---------------------------------- 121
           P   E WL  +EKC RV   LE++KV                                  
Sbjct: 87  PTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQNDAEDWWRMEESRRRTTGTMTVAEYE 146

Query: 122 ---------------------RHFEAGLRSEIRTLATALVARCSYFKLIEVALRIEKSLV 128
                                + FE GLR EIRT  TA      + KL+EVALR+EKSL 
Sbjct: 147 KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN 206

BLAST of PI0012263 vs. NCBI nr
Match: KAA0056913.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYJ99413.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 4.8e-14
Identity = 60/161 (37.27%), Postives = 82/161 (50.93%), Query Frame = 0

Query: 1   MDSED---QSVNPYARRVMEEELSDRLMQRLIDGL---SKDQEKKYGIEQLKALGAKEFS 60
           M+SE+   +S  P+    +EE+L DRL QR +  +     D EKK+ IE+LKALG+  F+
Sbjct: 23  MESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFA 82

Query: 61  GVVEPEQTEKWLRTLEKCLRVMECLEEKKV----------------------------RH 120
               P   E WL  +EKC RVM C E++KV                            + 
Sbjct: 83  RTTNPANAEAWLTLIEKCFRVMRCSEDRKVELSAFLLQNGAEDWWHDRNVIKDEAERCKR 142

Query: 121 FEAGLRSEIRTLATALVARCSYFKLIEVALRIEKSLVKGKK 128
           FE GLR +IRTL TA        KL++ ALR+EKSL + K+
Sbjct: 143 FEEGLREKIRTLVTACADSNDLSKLVKGALRVEKSLNESKR 183

BLAST of PI0012263 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-13
Identity = 64/191 (33.51%), Postives = 81/191 (42.41%), Query Frame = 0

Query: 2   DSEDQSVNPYARRVMEEELSDRLMQRLIDGL---SKDQEKKYGIEQLKALGAKEFSGVVE 61
           +S+ +S  P+    MEE+L DRL QRLI G+     D EKKYGIE+LKALGA  F G   
Sbjct: 46  ESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTN 105

Query: 62  PEQTEKWLRTLEKCLRVMECLEEKKV---------------------------------- 121
           P   E WL  +EKC RV  C E++KV                                  
Sbjct: 106 PADAEAWLTLIEKCFRVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIRS 165

Query: 122 ----------------------------RHFEAGLRSEIRTLATALVARCSYFKLIEVAL 128
                                       + FE GL+ EIRT  T       + KL+E AL
Sbjct: 166 MTVTKYEKKYTELSKYATRVIEDEVERCKRFEEGLQEEIRTPVTTCADWNDFSKLVEAAL 225

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LI313.2e-1654.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1[more]
A0A0A0KCZ41.6e-1551.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127310 PE=4 SV=1[more]
A0A5A7T1M01.4e-1434.78Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... [more]
A0A5A7ULX52.3e-1437.27DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3DES58.8e-1433.51DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
KGN61535.16.7e-1654.76hypothetical protein Csa_006696 [Cucumis sativus][more]
KGN46719.13.3e-1551.40hypothetical protein Csa_020815 [Cucumis sativus][more]
KAA0036813.12.8e-1434.78DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0056913.14.8e-1437.27DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYJ99413.1 D... [more]
KAA0035225.11.8e-1333.51DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012263.1PI0012263.1mRNA