PI0012226 (gene) Melon (PI 482460) v1

Overview


Name	PI0012226
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol polyprotein
Location	chr09: 16481732 .. 16483069 (+)
RNA-Seq Expression	PI0012226
Synteny	PI0012226

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGTACTCGCCATGGCAACTATCAGTCCAAAGATGTGAAGAAGCCCTCTTCCTCATCTCTCACTGATACTCGTCTCCACAAAGTTGGCACCTCTATTACTAGCACCCGTATTAACAAACACGGTGTTCGCATGCCAGGTTCTAAGTCTCCATCTGTCTCTCACAACATAACCCATATTGCTCTACCTTCTAGTGAGGAAGTGTTGGTTTCTCATGGTTCTTCTTCTACTTAGGACCCATCTCAAGTACATTCTCTTCCTGTTGTTTTTTATACCTCTGATCTTCTACATGTGTCTCCTACTATCCTAAATGAGTCTAATGCTCCTGATGATTCCGCTTTGCATGAAACTCTTAATCCTGTTTCCTCTGATCATGCCACTACAACTGTGCATTCTGTTTATAATATTATTGATACTATTAATTCTGATGATTATACTACTAATATTGAGACTGATGTTGAAAATGTGTCTGTGCCTGTTGTTGGTAATGATGTTGCTACTATTGTGACTAATATTAATATTGACCATAATGATCCTACTGATACGTCTGTTCATGATGATCTTGTCTCTGAGTCGTGTGTTGATTTATATTGCTTCTATCGAGACTGTTGATGATTTGTTCAGGGATGTCAATTGTACAATTCCCTCCTCTCCTACCTCTTCTAAAGATAACATTGTTCTTTCCCAACTTGTTAAACGACGCCCCCTTGTTTTCTTTATCCCTATTCCTACACCGACCTCTAATAACATTCCTCCCACATATCTTCTGAGCACACAACACCTACCAAATCCAGAAACAAACGTGTGTCTACTAAGGTTGGTCGAAGGAAATTACCCCTAAATGTTGCCCTTGTGCCTATAGATGGTGTCTTTTTTCACAGTGAAGAGAACGTTAGACTATGGAAATATGTTGTTCATCATCGTCTTATCGATGAGTTCGAGGTTTCTGATCAACACCACTCTTGTTTAGTCATTATGGATTTAATTCAAAAAGTTGGTTTGTCCAGCGCTGTCTCCAAAATTAGCCCTTTATACCCAAAACTCATTTGTGGAATGATTGTCAATTTTTCATCTTCCCTTAATGATCCTAGCAGTCCTGACCACTTCGAAATTCATGTGCGTGGTTTTGGTTTTGATCCCTCTCCCTTAGCTATTAATCAGTTCCTTGGTATTGTTCTACCAATGGATTTGTCAGCTACCTATCCTTCTCCTGATACTCTTGTTTATGAGTTGACCGATGGGACTATAACCTTTAGCAAAATATCCATGGAATTTGAAAGTAGAGACAAAATCTCATTGAATTGTGAAAAGAATTCTTTCGAATTGTTCTTGTAA

mRNA sequence

ATGGACAGTACTCGCCATGGCAACTATCAGTCCAAAGATGTGAAGAAGCCCTCTTCCTCATCTCTCACTGATACTCGTCTCCACAAAGTTGGCACCTCTATTACTAGCACCCGTATTAACAAACACGGTGTTCGCATGCCAGGTTCTAAGTCTCCATCTGTCTCTCACAACATAACCCATATTGCTCTACCTTCTAGTGAGGAAGTGTTGGTTTCTCATGATGGTGTCTTTTTTCACAGTGAAGAGAACGTTAGACTATGGAAATATGTTGTTCATCATCGTCTTATCGATGAGTTCGAGGTTTCTGATCAACACCACTCTTGTTTAGTCATTATGGATTTAATTCAAAAAGTTGGTTTGTCCAGCGCTGTCTCCAAAATTAGCCCTTTATACCCAAAACTCATTTGTGGAATGATTGTCAATTTTTCATCTTCCCTTAATGATCCTAGCAGTCCTGACCACTTCGAAATTCATGTGCGTGGTTTTGGTTTTGATCCCTCTCCCTTAGCTATTAATCAGTTCCTTGGTATTGTTCTACCAATGGATTTGTCAGCTACCTATCCTTCTCCTGATACTCTTGTTTATGAGTTGACCGATGGGACTATAACCTTTAGCAAAATATCCATGGAATTTGAAAGTAGAGACAAAATCTCATTGAATTGTGAAAAGAATTCTTTCGAATTGTTCTTGTAA

Coding sequence (CDS)

ATGGACAGTACTCGCCATGGCAACTATCAGTCCAAAGATGTGAAGAAGCCCTCTTCCTCATCTCTCACTGATACTCGTCTCCACAAAGTTGGCACCTCTATTACTAGCACCCGTATTAACAAACACGGTGTTCGCATGCCAGGTTCTAAGTCTCCATCTGTCTCTCACAACATAACCCATATTGCTCTACCTTCTAGTGAGGAAGTGTTGGTTTCTCATGATGGTGTCTTTTTTCACAGTGAAGAGAACGTTAGACTATGGAAATATGTTGTTCATCATCGTCTTATCGATGAGTTCGAGGTTTCTGATCAACACCACTCTTGTTTAGTCATTATGGATTTAATTCAAAAAGTTGGTTTGTCCAGCGCTGTCTCCAAAATTAGCCCTTTATACCCAAAACTCATTTGTGGAATGATTGTCAATTTTTCATCTTCCCTTAATGATCCTAGCAGTCCTGACCACTTCGAAATTCATGTGCGTGGTTTTGGTTTTGATCCCTCTCCCTTAGCTATTAATCAGTTCCTTGGTATTGTTCTACCAATGGATTTGTCAGCTACCTATCCTTCTCCTGATACTCTTGTTTATGAGTTGACCGATGGGACTATAACCTTTAGCAAAATATCCATGGAATTTGAAAGTAGAGACAAAATCTCATTGAATTGTGAAAAGAATTCTTTCGAATTGTTCTTGTAA

Protein sequence

MDSTRHGNYQSKDVKKPSSSSLTDTRLHKVGTSITSTRINKHGVRMPGSKSPSVSHNITHIALPSSEEVLVSHDGVFFHSEENVRLWKYVVHHRLIDEFEVSDQHHSCLVIMDLIQKVGLSSAVSKISPLYPKLICGMIVNFSSSLNDPSSPDHFEIHVRGFGFDPSPLAINQFLGIVLPMDLSATYPSPDTLVYELTDGTITFSKISMEFESRDKISLNCEKNSFELFL

Homology

[Close]

BLAST of PI0012226 vs. ExPASy TrEMBL
Match: A0A5D3D4K0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00460 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28
Identity = 66/133 (49.62%), Postives = 88/133 (66.17%), Query Frame = 0


Query: 71  VSHDGVFFHSEENVRLWKYVVHHRLIDEFEVSDQHHSCLVIMDLIQKVGLSSAVSKISPL 130
           VS DG+ FH +ENV+ WK+VV  RL DE  V D+H SC+ IMDLI++ GL+  +  + P 
Sbjct: 724 VSIDGISFHDKENVQCWKFVVQRRLADEVNVFDKHQSCMSIMDLIERAGLAKTIFNVGPF 783

Query: 131 YPKLICGMIVNFSSSLNDPSSPDHFEIHVRGFGFDPSPLAINQFLGIVLPMDLSATYPSP 190
           YP+LI   IVNF    NDPSSPD+   HVRGF F+ SP  IN+FLG V+ +D S++ PS 
Sbjct: 784 YPQLIREFIVNFPDEFNDPSSPDYQTAHVRGFKFEISPTVINRFLGNVVDIDCSSSSPSI 843

Query: 191 DTLVYELTDGTIT 204
             L   L+  T++
Sbjct: 844 GILASVLSGATLS 856

[Close]

BLAST of PI0012226 vs. ExPASy TrEMBL
Match: A0A5A7VFF7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00670 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.9e-28
Identity = 60/130 (46.15%), Postives = 88/130 (67.69%), Query Frame = 0


Query: 74  DGVFFHSEENVRLWKYVVHHRLIDEFEVSDQHHSCLVIMDLIQKVGLSSAVSKISPLYPK 133
           +G+ FH EENV+ WK+VV  R+ DE  +SD+HHSC+ IM+LI+K GLS  +S + P YP+
Sbjct: 246 NGISFHLEENVKRWKFVVQRRIADEVNISDKHHSCVSIMNLIEKAGLSKTISDVGPFYPQ 305

Query: 134 LICGMIVNFSSSLNDPSSPDHFEIHVRGFGFDPSPLAINQFLGIVLPMDLSATYPSPDTL 193
           LI   IVN  +  NDPSSP++  +H++GF F  SP  IN FLG  + ++ S + P+ D L
Sbjct: 306 LIREFIVNLPADFNDPSSPNYQTVHIKGFKFTISPTVINGFLGNAISINFSPSSPATDVL 365

Query: 194 VYELTDGTIT 204
            + L+ G ++
Sbjct: 366 AFVLSGGILS 375

[Close]

BLAST of PI0012226 vs. ExPASy TrEMBL
Match: A0A5D3B7L1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002300 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.0e-27
Identity = 62/130 (47.69%), Postives = 88/130 (67.69%), Query Frame = 0


Query: 74  DGVFFHSEENVRLWKYVVHHRLIDEFEVSDQHHSCLVIMDLIQKVGLSSAVSKISPLYPK 133
           DG+ FH EEN+  WK+VV  R+ DE  +SD+HHSC+ IM+LI+K  LS  +S + P YP+
Sbjct: 421 DGISFHLEENIHRWKFVVQRRIADEVNISDKHHSCVSIMNLIEKARLSKTISDVYPFYPQ 480

Query: 134 LICGMIVNFSSSLNDPSSPDHFEIHVRGFGFDPSPLAINQFLGIVLPMDLSATYPSPDTL 193
           LI   IVN  +++NDPSSPD+  +H+RGF F  SP  IN F+G V+ ++ S +  S D L
Sbjct: 481 LIREFIVNLPTNVNDPSSPDYLTVHIRGFKFTISPTMINGFMGNVVSINFSPSSSSTDVL 540

Query: 194 VYELTDGTIT 204
             EL+  T++
Sbjct: 541 ASELSRVTLS 550

[Close]

BLAST of PI0012226 vs. ExPASy TrEMBL
Match: A0A1S3C0F4 (uncharacterized protein LOC103495053 OS=Cucumis melo OX=3656 GN=LOC103495053 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.0e-27
Identity = 62/130 (47.69%), Postives = 88/130 (67.69%), Query Frame = 0


Query: 74  DGVFFHSEENVRLWKYVVHHRLIDEFEVSDQHHSCLVIMDLIQKVGLSSAVSKISPLYPK 133
           DG+ FH EEN+  WK+VV  R+ DE  +SD+HHSC+ IM+LI+K  LS  +S + P YP+
Sbjct: 124 DGISFHLEENIHRWKFVVQRRIADEVNISDKHHSCVSIMNLIEKARLSKTISDVYPFYPQ 183

Query: 134 LICGMIVNFSSSLNDPSSPDHFEIHVRGFGFDPSPLAINQFLGIVLPMDLSATYPSPDTL 193
           LI   IVN  +++NDPSSPD+  +H+RGF F  SP  IN F+G V+ ++ S +  S D L
Sbjct: 184 LIREFIVNLPTNVNDPSSPDYLTVHIRGFKFTISPTMINGFMGNVVSINFSPSSSSTDVL 243

Query: 194 VYELTDGTIT 204
             EL+  T++
Sbjct: 244 ASELSRVTLS 253

[Close]

BLAST of PI0012226 vs. ExPASy TrEMBL
Match: A0A5D3BB19 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00310 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 62/129 (48.06%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 75  GVFFHSEENVRLWKYVVHHRLIDEFEVSDQHHSCLVIMDLIQKVGLSSAVSKISPLYPKL 134
           G+ FH EENV+ WK+VV  R+ DE  +S++HHSC+ I++LI+K GLS  +S +  +YPKL
Sbjct: 148 GISFHHEENVQRWKFVVQRRIADEVNISNKHHSCVSIINLIEKAGLSKTISNVGSIYPKL 207

Query: 135 ICGMIVNFSSSLNDPSSPDHFEIHVRGFGFDPSPLAINQFLGIVLPMDLSATYPSPDTLV 194
           I   IVN S+  NDPSSPD+  +H+RGF F  SP  IN FLG  + ++ S + PS D L 
Sbjct: 208 IRKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLA 267

Query: 195 YELTDGTIT 204
             L+ G ++
Sbjct: 268 SVLSGGALS 276

[Close]

BLAST of PI0012226 vs. NCBI nr
Match: KAA0039208.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK18475.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 4.2e-28
Identity = 66/133 (49.62%), Postives = 88/133 (66.17%), Query Frame = 0


Query: 71  VSHDGVFFHSEENVRLWKYVVHHRLIDEFEVSDQHHSCLVIMDLIQKVGLSSAVSKISPL 130
           VS DG+ FH +ENV+ WK+VV  RL DE  V D+H SC+ IMDLI++ GL+  +  + P 
Sbjct: 724 VSIDGISFHDKENVQCWKFVVQRRLADEVNVFDKHQSCMSIMDLIERAGLAKTIFNVGPF 783

Query: 131 YPKLICGMIVNFSSSLNDPSSPDHFEIHVRGFGFDPSPLAINQFLGIVLPMDLSATYPSP 190
           YP+LI   IVNF    NDPSSPD+   HVRGF F+ SP  IN+FLG V+ +D S++ PS 
Sbjct: 784 YPQLIREFIVNFPDEFNDPSSPDYQTAHVRGFKFEISPTVINRFLGNVVDIDCSSSSPSI 843

Query: 191 DTLVYELTDGTIT 204
             L   L+  T++
Sbjct: 844 GILASVLSGATLS 856

[Close]

BLAST of PI0012226 vs. NCBI nr
Match: KAA0066044.1 (uncharacterized protein E6C27_scaffold21G00170 [Cucumis melo var. makuwa] >TYJ99852.1 uncharacterized protein E5676_scaffold446G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-27
Identity = 60/130 (46.15%), Postives = 88/130 (67.69%), Query Frame = 0


Query: 74  DGVFFHSEENVRLWKYVVHHRLIDEFEVSDQHHSCLVIMDLIQKVGLSSAVSKISPLYPK 133
           +G+ FH EENV+ WK+VV  R+ DE  +SD+HHSC+ IM+LI+K GLS  +S + P YP+
Sbjct: 246 NGISFHLEENVKRWKFVVQRRIADEVNISDKHHSCVSIMNLIEKAGLSKTISDVGPFYPQ 305

Query: 134 LICGMIVNFSSSLNDPSSPDHFEIHVRGFGFDPSPLAINQFLGIVLPMDLSATYPSPDTL 193
           LI   IVN  +  NDPSSP++  +H++GF F  SP  IN FLG  + ++ S + P+ D L
Sbjct: 306 LIREFIVNLPADFNDPSSPNYQTVHIKGFKFTISPTVINGFLGNAISINFSPSSPATDVL 365

Query: 194 VYELTDGTIT 204
            + L+ G ++
Sbjct: 366 AFVLSGGILS 375

[Close]

BLAST of PI0012226 vs. NCBI nr
Match: KAA0036856.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95920.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-27
Identity = 62/130 (47.69%), Postives = 88/130 (67.69%), Query Frame = 0


Query: 74  DGVFFHSEENVRLWKYVVHHRLIDEFEVSDQHHSCLVIMDLIQKVGLSSAVSKISPLYPK 133
           DG+ FH EEN+  WK+VV  R+ DE  +SD+HHSC+ IM+LI+K  LS  +S + P YP+
Sbjct: 421 DGISFHLEENIHRWKFVVQRRIADEVNISDKHHSCVSIMNLIEKARLSKTISDVYPFYPQ 480

Query: 134 LICGMIVNFSSSLNDPSSPDHFEIHVRGFGFDPSPLAINQFLGIVLPMDLSATYPSPDTL 193
           LI   IVN  +++NDPSSPD+  +H+RGF F  SP  IN F+G V+ ++ S +  S D L
Sbjct: 481 LIREFIVNLPTNVNDPSSPDYLTVHIRGFKFTISPTMINGFMGNVVSINFSPSSSSTDVL 540

Query: 194 VYELTDGTIT 204
             EL+  T++
Sbjct: 541 ASELSRVTLS 550

[Close]

BLAST of PI0012226 vs. NCBI nr
Match: XP_008454699.1 (PREDICTED: uncharacterized protein LOC103495053 [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-27
Identity = 62/130 (47.69%), Postives = 88/130 (67.69%), Query Frame = 0


Query: 74  DGVFFHSEENVRLWKYVVHHRLIDEFEVSDQHHSCLVIMDLIQKVGLSSAVSKISPLYPK 133
           DG+ FH EEN+  WK+VV  R+ DE  +SD+HHSC+ IM+LI+K  LS  +S + P YP+
Sbjct: 124 DGISFHLEENIHRWKFVVQRRIADEVNISDKHHSCVSIMNLIEKARLSKTISDVYPFYPQ 183

Query: 134 LICGMIVNFSSSLNDPSSPDHFEIHVRGFGFDPSPLAINQFLGIVLPMDLSATYPSPDTL 193
           LI   IVN  +++NDPSSPD+  +H+RGF F  SP  IN F+G V+ ++ S +  S D L
Sbjct: 184 LIREFIVNLPTNVNDPSSPDYLTVHIRGFKFTISPTMINGFMGNVVSINFSPSSSSTDVL 243

Query: 194 VYELTDGTIT 204
             EL+  T++
Sbjct: 244 ASELSRVTLS 253

[Close]

BLAST of PI0012226 vs. NCBI nr
Match: TYJ96199.1 (uncharacterized protein E5676_scaffold261G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-27
Identity = 62/129 (48.06%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 75  GVFFHSEENVRLWKYVVHHRLIDEFEVSDQHHSCLVIMDLIQKVGLSSAVSKISPLYPKL 134
           G+ FH EENV+ WK+VV  R+ DE  +S++HHSC+ I++LI+K GLS  +S +  +YPKL
Sbjct: 148 GISFHHEENVQRWKFVVQRRIADEVNISNKHHSCVSIINLIEKAGLSKTISNVGSIYPKL 207

Query: 135 ICGMIVNFSSSLNDPSSPDHFEIHVRGFGFDPSPLAINQFLGIVLPMDLSATYPSPDTLV 194
           I   IVN S+  NDPSSPD+  +H+RGF F  SP  IN FLG  + ++ S + PS D L 
Sbjct: 208 IRKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLA 267

Query: 195 YELTDGTIT 204
             L+ G ++
Sbjct: 268 SVLSGGALS 276

The following BLAST results are available for this feature:

BLAST of PI0012226 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012226 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4K0	2.0e-28	49.62	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G...	[more]
A0A5A7VFF7	5.9e-28	46.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3B7L1	1.0e-27	47.69	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G...	[more]
A0A1S3C0F4	1.0e-27	47.69	uncharacterized protein LOC103495053 OS=Cucumis melo OX=3656 GN=LOC103495053 PE=...	[more]
A0A5D3BB19	1.3e-27	48.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0012226 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039208.1	4.2e-28	49.62	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK18475.1 gag-pol polyprotein [...	[more]
KAA0066044.1	1.2e-27	46.15	uncharacterized protein E6C27_scaffold21G00170 [Cucumis melo var. makuwa] >TYJ99...	[more]
KAA0036856.1	2.1e-27	47.69	gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95920.1 gag-pol polyprotein [...	[more]
XP_008454699.1	2.1e-27	47.69	PREDICTED: uncharacterized protein LOC103495053 [Cucumis melo]	[more]
TYJ96199.1	2.7e-27	48.06	uncharacterized protein E5676_scaffold261G00310 [Cucumis melo var. makuwa]	[more]

BLAST of PI0012226 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012226.1	PI0012226.1	mRNA