PI0012210 (gene) Melon (PI 482460) v1

Overview
NamePI0012210
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionZinc finger, SWIM-type
Locationchr02: 20411239 .. 20411961 (-)
RNA-Seq ExpressionPI0012210
SyntenyPI0012210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGACAACTGTCTTCCCTTCAACCTCCCCTTTAATTTCCTCACTCCCTATATAAACCCCTTCTTCTCCATTCCCCTTCTTTCCCTCAACCCCCCTCCCTCCTCCGCCTCCGGCACCGGCCATTCCCCACGGACTTCTCCATGGCCGACGCCTTACTCAGATCCGTCTACCACGGCTGCATCGCTGGCTCCGACGTCGAGATCGACCGCCGTCCTTACCATAAGAACTGCACCTGCGCTCTTCACGACCGAGATAATAGACGCTGTTCTCATTCTAAACATAAATCCGTCTCGTACCCGATCAGACGAGCCTGGAGTGAGGGATGTTTGGCTATGGTTGCTGCTTCTGCGGCTTCTGGCATTTCTTCTCCTTCTTCGCCGTCCATGGATCAGGTTGAAAGCCTTGGATCTTATAAGAGATGAGCCGTATTGTTTTTATTTTTGCTTCTTATTTCTTGTTTTGTTAATCTAATTTGAATTTTGTTTTGTAATATATATGTGGAATTCTTTTTTTCGGTTAGTGGAATTCTTGATTTGAAAAGAGTGAAGTGATGAATGTAGATTTTAATTACTTGACTCTGTTTCTTCTTCTAATCTTTGTTGATTGATTGATTCATTGATTAATGGAATGGATTTGTGTTCTTGATTCGGATGAAACGATTCTCGTTTGAAAATCATTTCATCTATTTCAATTTGAGATTGAAGTGTTATGGATCCAAGTTTCT

mRNA sequence

CCGACAACTGTCTTCCCTTCAACCTCCCCTTTAATTTCCTCACTCCCTATATAAACCCCTTCTTCTCCATTCCCCTTCTTTCCCTCAACCCCCCTCCCTCCTCCGCCTCCGGCACCGGCCATTCCCCACGGACTTCTCCATGGCCGACGCCTTACTCAGATCCGTCTACCACGGCTGCATCGCTGGCTCCGACGTCGAGATCGACCGCCGTCCTTACCATAAGAACTGCACCTGCGCTCTTCACGACCGAGATAATAGACGCTGTTCTCATTCTAAACATAAATCCGTCTCGTACCCGATCAGACGAGCCTGGAGTGAGGGATGTTTGGCTATGGTTGCTGCTTCTGCGGCTTCTGGCATTTCTTCTCCTTCTTCGCCGTCCATGGATCAGGTTGAAAGCCTTGGATCTTATAAGAGATGAGCCGTATTGTTTTTATTTTTGCTTCTTATTTCTTGTTTTGTTAATCTAATTTGAATTTTGTTTTGTAATATATATGTGGAATTCTTTTTTTCGGTTAGTGGAATTCTTGATTTGAAAAGAGTGAAGTGATGAATGTAGATTTTAATTACTTGACTCTGTTTCTTCTTCTAATCTTTGTTGATTGATTGATTCATTGATTAATGGAATGGATTTGTGTTCTTGATTCGGATGAAACGATTCTCGTTTGAAAATCATTTCATCTATTTCAATTTGAGATTGAAGTGTTATGGATCCAAGTTTCT

Coding sequence (CDS)

ATGGCCGACGCCTTACTCAGATCCGTCTACCACGGCTGCATCGCTGGCTCCGACGTCGAGATCGACCGCCGTCCTTACCATAAGAACTGCACCTGCGCTCTTCACGACCGAGATAATAGACGCTGTTCTCATTCTAAACATAAATCCGTCTCGTACCCGATCAGACGAGCCTGGAGTGAGGGATGTTTGGCTATGGTTGCTGCTTCTGCGGCTTCTGGCATTTCTTCTCCTTCTTCGCCGTCCATGGATCAGGTTGAAAGCCTTGGATCTTATAAGAGATGA

Protein sequence

MADALLRSVYHGCIAGSDVEIDRRPYHKNCTCALHDRDNRRCSHSKHKSVSYPIRRAWSEGCLAMVAASAASGISSPSSPSMDQVESLGSYKR
Homology
BLAST of PI0012210 vs. ExPASy TrEMBL
Match: A0A1S3B9X6 (uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.6e-40
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0

Query: 1  MADALLRSVYHGCIAGSDVEIDRRPYHKNCTCALHDRDNRRCSH--SKHKSVSYPIRRAW 60
          MADA LR VYHGCIAG D  IDRRPYHKNC+CALHDRDNRRCSH  SKHKSVSYPIRRAW
Sbjct: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGISSPSSPSMDQVESLGSYKR 94
          SEGCLAMVAASAASG+SSPSSPSMDQVESLGSYKR
Sbjct: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 95

BLAST of PI0012210 vs. ExPASy TrEMBL
Match: A0A0A0LWK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36
Identity = 82/95 (86.32%), Postives = 85/95 (89.47%), Query Frame = 0

Query: 1  MADALLRSVYHGCIAGSDVEIDRRPYHKNCTCALHDRDNRRCSH--SKHKSVSYPIRRAW 60
          MADALLR VY+GCI   D EIDRRPYHKNC+CALHDRDN+RCSH  SKHKSVSYPIRRAW
Sbjct: 1  MADALLRCVYYGCIVSPDAEIDRRPYHKNCSCALHDRDNKRCSHSMSKHKSVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGISSPSSPSMDQVESLGSYKR 94
          SEGCLAMV   AASGISSPSSPSMDQVESLGSYKR
Sbjct: 61 SEGCLAMV---AASGISSPSSPSMDQVESLGSYKR 92

BLAST of PI0012210 vs. ExPASy TrEMBL
Match: A0A061GQ94 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038276 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = 0

Query: 2  ADALLRSVYHGCIAGSDVEIDRRPYHKNCTCALHDRDNRRCSHS--KHKSVSYPIRRAWS 61
          AD L RS+Y GCIAG D+ I+RRPYH+NC+CALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAASAASGISSPSSPSMDQVESLGSYK 93
          EGCLAM AAS  S  S  SSP+   V   G ++
Sbjct: 66 EGCLAMAAASCHS--SPSSSPAFSGVHGAGKHR 96

BLAST of PI0012210 vs. ExPASy TrEMBL
Match: A0A6J1KE46 (uncharacterized protein LOC111493529 OS=Cucurbita maxima OX=3661 GN=LOC111493529 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.4e-20
Identity = 56/90 (62.22%), Postives = 64/90 (71.11%), Query Frame = 0

Query: 2  ADALLRSVYHGCIAGSDVEIDRRPYHKNCTCALHD--RDNRRCSHSKHKSVSYPIRRAWS 61
          AD LLR VY  CIAG D EIDRRPYH+NC CALH   R + RCSHSK KS+ YPIRR+WS
Sbjct: 3  ADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRSWS 62

Query: 62 EGCLAMVAASAASGISSPSSPSMDQVESLG 90
          EGCLA+  ASA+S  S  SSP + +    G
Sbjct: 63 EGCLALALASASS--SPSSSPVVGKTSQPG 90

BLAST of PI0012210 vs. ExPASy TrEMBL
Match: A0A6J1G546 (uncharacterized protein LOC111450804 OS=Cucurbita moschata OX=3662 GN=LOC111450804 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.4e-20
Identity = 56/90 (62.22%), Postives = 64/90 (71.11%), Query Frame = 0

Query: 2  ADALLRSVYHGCIAGSDVEIDRRPYHKNCTCALHD--RDNRRCSHSKHKSVSYPIRRAWS 61
          AD LLR VY  CIAG D EIDRRPYH+NC CALH   R + RCSHSK KS+ YPIRR+WS
Sbjct: 3  ADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRSWS 62

Query: 62 EGCLAMVAASAASGISSPSSPSMDQVESLG 90
          EGCLA+  ASA+S  S  SSP + +    G
Sbjct: 63 EGCLALALASASS--SPSSSPVIGKTSQPG 90

BLAST of PI0012210 vs. NCBI nr
Match: XP_008443899.1 (PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 7.4e-40
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0

Query: 1  MADALLRSVYHGCIAGSDVEIDRRPYHKNCTCALHDRDNRRCSH--SKHKSVSYPIRRAW 60
          MADA LR VYHGCIAG D  IDRRPYHKNC+CALHDRDNRRCSH  SKHKSVSYPIRRAW
Sbjct: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGISSPSSPSMDQVESLGSYKR 94
          SEGCLAMVAASAASG+SSPSSPSMDQVESLGSYKR
Sbjct: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 95

BLAST of PI0012210 vs. NCBI nr
Match: KAE8653037.1 (hypothetical protein Csa_019637 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 6.7e-33
Identity = 75/91 (82.42%), Postives = 80/91 (87.91%), Query Frame = 0

Query: 1  MADALLRSVYHGCIAGSDVEIDRRPYHKNCTCALHDRDNRRCSH--SKHKSVSYPIRRAW 60
          MADALLR VY+GCI   D EIDRRPYHKNC+CALHDRDN+RCSH  SKHKSVSYPIRRAW
Sbjct: 1  MADALLRCVYYGCIVSPDAEIDRRPYHKNCSCALHDRDNKRCSHSMSKHKSVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGISSPSSPSMDQVESLG 90
          SEGCLAMV   AASGISSPSSPSMDQ+E +G
Sbjct: 61 SEGCLAMV---AASGISSPSSPSMDQIEGVG 88

BLAST of PI0012210 vs. NCBI nr
Match: KAG6587850.1 (hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 72/95 (75.79%), Postives = 75/95 (78.95%), Query Frame = 0

Query: 1  MADALLRSVYHGCIAGSDVEIDRRPYHKNCTCALHDRDNRRCSH--SKHKSVSYPIRRAW 60
          MADAL  SVYHGCIA  D EI RRPYHKNC CALHDRDNRRCSH  SKH +VSYPIRRAW
Sbjct: 1  MADALFGSVYHGCIATCDAEIARRPYHKNCGCALHDRDNRRCSHSMSKHSTVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGISSPSSPSMDQVESLGSYKR 94
          SEGCLAM AAS  SGISSPSS    + E LGS +R
Sbjct: 61 SEGCLAMAAAS-GSGISSPSSSPSMESEGLGSNRR 94

BLAST of PI0012210 vs. NCBI nr
Match: XP_007013703.2 (PREDICTED: uncharacterized protein LOC18588916 [Theobroma cacao])

HSP 1 Score: 108.6 bits (270), Expect = 2.9e-20
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = 0

Query: 2  ADALLRSVYHGCIAGSDVEIDRRPYHKNCTCALHDRDNRRCSHS--KHKSVSYPIRRAWS 61
          AD L RS+Y GCIAG D+ I+RRPYH+NC+CALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAASAASGISSPSSPSMDQVESLGSYK 93
          EGCLAM AAS  S  S  SSP+   V   G ++
Sbjct: 66 EGCLAMAAASCHS--SPSSSPAFSGVHGAGKHR 96

BLAST of PI0012210 vs. NCBI nr
Match: EOY31322.1 (Uncharacterized protein TCM_038276 [Theobroma cacao])

HSP 1 Score: 108.6 bits (270), Expect = 2.9e-20
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = 0

Query: 2  ADALLRSVYHGCIAGSDVEIDRRPYHKNCTCALHDRDNRRCSHS--KHKSVSYPIRRAWS 61
          AD L RS+Y GCIAG D+ I+RRPYH+NC+CALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAASAASGISSPSSPSMDQVESLGSYK 93
          EGCLAM AAS  S  S  SSP+   V   G ++
Sbjct: 66 EGCLAMAAASCHS--SPSSSPAFSGVHGAGKHR 96

BLAST of PI0012210 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-14
Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 0

Query: 2  ADALLRSVYHGCIAGSDVEIDRRPYHKNCTCALHDR-------DNRR----C-SHSKHKS 61
          AD + RS++ GCI+G D  I+RRPYHKNC CALHD+        N+R    C  H   +S
Sbjct: 3  ADGIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSSES 62

Query: 62 VSYPIRRAWSEGCLAMV----AASAASGISSPSSPS 82
          +S+PIRR+WSEG +  +    ++S++S + S SS S
Sbjct: 63 ISFPIRRSWSEGNIMAMNLFSSSSSSSNLQSLSSSS 98

BLAST of PI0012210 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-14
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 3   DALLRSVYHGCIAGSDVEIDRRPYHKNCTCALHDRDN-----RRCSHSKHKSVSYPIRRA 62
           D + R+++ GCI+  D  I RRPYHKNC CALH+R         C H + + V +PI+R+
Sbjct: 7   DGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRS 66

Query: 63  WSEG-CLAMVAASAASGISSPSSPSMDQVESLGS 91
           WSEG  LA+  AS++S  +  S  S   + +L S
Sbjct: 67  WSEGNSLALHLASSSSSSNLQSLSSSSSISTLAS 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3B9X63.6e-4090.53uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=... [more]
A0A0A0LWK01.4e-3686.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1[more]
A0A061GQ941.4e-2059.14Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038276 PE=4 SV=1[more]
A0A6J1KE465.4e-2062.22uncharacterized protein LOC111493529 OS=Cucurbita maxima OX=3661 GN=LOC111493529... [more]
A0A6J1G5465.4e-2062.22uncharacterized protein LOC111450804 OS=Cucurbita moschata OX=3662 GN=LOC1114508... [more]
Match NameE-valueIdentityDescription
XP_008443899.17.4e-4090.53PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo][more]
KAE8653037.16.7e-3382.42hypothetical protein Csa_019637 [Cucumis sativus][more]
KAG6587850.11.3e-2875.79hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_007013703.22.9e-2059.14PREDICTED: uncharacterized protein LOC18588916 [Theobroma cacao][more]
EOY31322.12.9e-2059.14Uncharacterized protein TCM_038276 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
AT2G46490.12.5e-1444.79unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G35110.15.7e-1441.49unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..93
NoneNo IPR availablePANTHERPTHR35121HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATEDcoord: 2..83
NoneNo IPR availablePANTHERPTHR35121:SF2BNAC04G52100D PROTEINcoord: 2..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012210.1PI0012210.1mRNA