PI0012128 (gene) Melon (PI 482460) v1

Overview
NamePI0012128
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Description30S ribosomal protein S18, chloroplastic
Locationtig00003741: 43579 .. 43884 (+)
RNA-Seq ExpressionPI0012128
SyntenyPI0012128
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAATCCAAGCGACTCTTTCTTAAATCCAAACGATCTTTTCGTAGGCGTTTGCCCCCGATCCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGCGAGTCGACCGCTAGAACTATTGGTCTTAGAACCAGGAATAAATAG

mRNA sequence

ATGGATAAATCCAAGCGACTCTTTCTTAAATCCAAACGATCTTTTCGTAGGCGTTTGCCCCCGATCCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGCGAGTCGACCGCTAGAACTATTGGTCTTAGAACCAGGAATAAATAG

Coding sequence (CDS)

ATGGATAAATCCAAGCGACTCTTTCTTAAATCCAAACGATCTTTTCGTAGGCGTTTGCCCCCGATCCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGCGAGTCGACCGCTAGAACTATTGGTCTTAGAACCAGGAATAAATAG

Protein sequence

MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK
Homology
BLAST of PI0012128 vs. ExPASy Swiss-Prot
Match: A0ZZ57 (30S ribosomal protein S18, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps18 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.9e-45
Identity = 98/101 (97.03%), Postives = 98/101 (97.03%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSEST RT  LRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTTRTTALRTRNK 101

BLAST of PI0012128 vs. ExPASy Swiss-Prot
Match: Q2L928 (30S ribosomal protein S18, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps18 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-44
Identity = 97/101 (96.04%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILS LPFLNNEKQFERSEST RT  LRTRNK
Sbjct: 61  LITIAIKQARILSSLPFLNNEKQFERSESTTRTTALRTRNK 101

BLAST of PI0012128 vs. ExPASy Swiss-Prot
Match: Q0ZIZ8 (30S ribosomal protein S18, chloroplastic OS=Vitis vinifera OX=29760 GN=rps18 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-44
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKR FLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRPFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILS LPFLNNEKQFER+ESTART GLRTRNK
Sbjct: 61  LITIAIKQARILSSLPFLNNEKQFERTESTARTTGLRTRNK 101

BLAST of PI0012128 vs. ExPASy Swiss-Prot
Match: B1A957 (30S ribosomal protein S18, chloroplastic OS=Carica papaya OX=3649 GN=rps18 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.3e-44
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLF KSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILS LPFLNNEKQFERSEST +T GLRTRNK
Sbjct: 61  LITIAIKQARILSSLPFLNNEKQFERSESTTKTTGLRTRNK 101

BLAST of PI0012128 vs. ExPASy Swiss-Prot
Match: Q0G9U0 (30S ribosomal protein S18, chloroplastic OS=Daucus carota OX=4039 GN=rps18 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.3e-44
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKR FLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRPFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFER+EST RT GLR RNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERTESTTRTAGLRARNK 101

BLAST of PI0012128 vs. ExPASy TrEMBL
Match: A0A120L1C7 (30S ribosomal protein S18, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN=rps18 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.8e-44
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLFLKSKRSFRRRLPPI+SGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIESGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

BLAST of PI0012128 vs. ExPASy TrEMBL
Match: A0A291IBF4 (30S ribosomal protein S18, chloroplastic OS=Gynostemma burmanicum (nom. inval.) OX=1348122 GN=rps18 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.8e-44
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLFLKSKRSFRRRLPPI+SGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIESGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

BLAST of PI0012128 vs. ExPASy TrEMBL
Match: A0A2L0WR51 (30S ribosomal protein S18, chloroplastic OS=Gynostemma compressum OX=1348125 GN=rps18 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.8e-44
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVN+LTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNKLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

BLAST of PI0012128 vs. ExPASy TrEMBL
Match: A0A291IB68 (30S ribosomal protein S18, chloroplastic OS=Gynostemma longipes OX=555431 GN=rps18 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.8e-44
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLFLKSKRSFRRRLPPI+SGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIESGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

BLAST of PI0012128 vs. ExPASy TrEMBL
Match: A0A291IAQ8 (30S ribosomal protein S18, chloroplastic OS=Gynostemma caulopterum OX=1592219 GN=rps18 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.8e-44
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVN+LTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNKLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

BLAST of PI0012128 vs. NCBI nr
Match: QTA71770.1 (ribosomal protein S18 [Coriaria nepalensis])

HSP 1 Score: 187.2 bits (474), Expect = 7.0e-44
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSESTART+GLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTVGLRTRNK 101

BLAST of PI0012128 vs. NCBI nr
Match: YP_009236302.1 (ribosomal protein S18 [Gynostemma pentaphyllum] >YP_009440179.1 ribosomal protein S18 [Gynostemma longipes] >YP_009440266.1 ribosomal protein S18 [Gynostemma burmanicum (nom. inval.)] >YP_009440353.1 ribosomal protein S18 [Gynostemma pubescens] >AMF84032.1 ribosomal protein S18 [Gynostemma pentaphyllum] >ANI25206.1 ribosomal protein S18 [Gynostemma pentaphyllum] >ART65016.1 ribosomal protein S18 [Gynostemma pentaphyllum] >ATG86943.1 ribosomal protein S18 [Gynostemma longipes] >ATG87030.1 ribosomal protein S18 [Gynostemma burmanicum (nom. inval.)])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLFLKSKRSFRRRLPPI+SGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIESGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

BLAST of PI0012128 vs. NCBI nr
Match: YP_009439913.1 (ribosomal protein S18 [Gynostemma caulopterum] >YP_009468883.1 ribosomal protein S18 [Gynostemma compressum] >ATG86769.1 ribosomal protein S18 [Gynostemma caulopterum] >AVA29860.1 ribosomal protein S18 [Gynostemma compressum])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVN+LTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNKLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

BLAST of PI0012128 vs. NCBI nr
Match: YP_009526324.1 (ribosomal protein S18 [Hemsleya lijiangensis] >YP_010119756.1 ribosomal protein S18 [Hemsleya zhejiangensis] >AXU40443.1 ribosomal protein S18 [Gomphogyne cissiformis var. villosa] >AXU40530.1 ribosomal protein S18 [Hemsleya lijiangensis] >QRC26963.1 ribosomal protein S18 [Hemsleya zhejiangensis])

HSP 1 Score: 185.7 bits (470), Expect = 2.0e-43
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LIT AIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK
Sbjct: 61  LITTAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 101

BLAST of PI0012128 vs. NCBI nr
Match: YP_004072484.1 (ribosomal protein S18 [Corynocarpus laevigatus] >ADO60332.1 ribosomal protein S18 [Corynocarpus laevigatus])

HSP 1 Score: 185.3 bits (469), Expect = 2.7e-43
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTR K
Sbjct: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRTK 101

BLAST of PI0012128 vs. TAIR 10
Match: ATCG00650.1 (ribosomal protein S18 )

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-43
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 0

Query: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
           M+KSKRLF KSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNR+TLKQQR
Sbjct: 1   MNKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRVTLKQQR 60

Query: 61  LITIAIKQARILSLLPFLNNEKQFERSESTARTIGLRTRNK 102
           LITIAIKQARILSLLPFLNN+KQFERSEST RT  LRTR K
Sbjct: 61  LITIAIKQARILSLLPFLNNQKQFERSESTPRTTSLRTRKK 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0ZZ573.9e-4597.0330S ribosomal protein S18, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1... [more]
Q2L9281.9e-4496.0430S ribosomal protein S18, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps18 ... [more]
Q0ZIZ81.9e-4496.0430S ribosomal protein S18, chloroplastic OS=Vitis vinifera OX=29760 GN=rps18 PE=... [more]
B1A9573.3e-4495.0530S ribosomal protein S18, chloroplastic OS=Carica papaya OX=3649 GN=rps18 PE=3 ... [more]
Q0G9U04.3e-4495.0530S ribosomal protein S18, chloroplastic OS=Daucus carota OX=4039 GN=rps18 PE=3 ... [more]
Match NameE-valueIdentityDescription
A0A120L1C75.8e-4499.0130S ribosomal protein S18, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN... [more]
A0A291IBF45.8e-4499.0130S ribosomal protein S18, chloroplastic OS=Gynostemma burmanicum (nom. inval.) ... [more]
A0A2L0WR515.8e-4499.0130S ribosomal protein S18, chloroplastic OS=Gynostemma compressum OX=1348125 GN=... [more]
A0A291IB685.8e-4499.0130S ribosomal protein S18, chloroplastic OS=Gynostemma longipes OX=555431 GN=rps... [more]
A0A291IAQ85.8e-4499.0130S ribosomal protein S18, chloroplastic OS=Gynostemma caulopterum OX=1592219 GN... [more]
Match NameE-valueIdentityDescription
QTA71770.17.0e-4499.01ribosomal protein S18 [Coriaria nepalensis][more]
YP_009236302.11.2e-4399.01ribosomal protein S18 [Gynostemma pentaphyllum] >YP_009440179.1 ribosomal protei... [more]
YP_009439913.11.2e-4399.01ribosomal protein S18 [Gynostemma caulopterum] >YP_009468883.1 ribosomal protein... [more]
YP_009526324.12.0e-4399.01ribosomal protein S18 [Hemsleya lijiangensis] >YP_010119756.1 ribosomal protein ... [more]
YP_004072484.12.7e-4399.01ribosomal protein S18 [Corynocarpus laevigatus] >ADO60332.1 ribosomal protein S1... [more]
Match NameE-valueIdentityDescription
ATCG00650.11.3e-4392.08ribosomal protein S18 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001648Ribosomal protein S18PRINTSPR00974RIBOSOMALS18coord: 35..45
score: 60.88
coord: 67..77
score: 71.07
coord: 53..67
score: 54.34
coord: 45..52
score: 65.53
IPR001648Ribosomal protein S18TIGRFAMTIGR00165TIGR00165coord: 23..79
e-value: 2.4E-17
score: 60.9
IPR001648Ribosomal protein S18PFAMPF01084Ribosomal_S18coord: 27..75
e-value: 5.0E-19
score: 68.2
IPR001648Ribosomal protein S18PANTHERPTHR1347930S RIBOSOMAL PROTEIN S18coord: 2..100
IPR001648Ribosomal protein S18HAMAPMF_00270Ribosomal_S18coord: 12..80
score: 19.469969
IPR036870Ribosomal protein S18 superfamilyGENE3D4.10.640.10Ribosomal protein S18coord: 21..84
e-value: 3.0E-28
score: 99.4
IPR036870Ribosomal protein S18 superfamilySUPERFAMILY46911Ribosomal protein S18coord: 15..81
NoneNo IPR availablePANTHERPTHR13479:SF6130S RIBOSOMAL PROTEIN S18, CHLOROPLASTICcoord: 2..100
IPR018275Ribosomal protein S18, conserved sitePROSITEPS00057RIBOSOMAL_S18coord: 28..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012128.1PI0012128.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome