PI0012111 (gene) Melon (PI 482460) v1

Overview
NamePI0012111
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr02: 5841676 .. 5842101 (+)
RNA-Seq ExpressionPI0012111
SyntenyPI0012111
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCCTTATATTCAAGTTAAAGAGTTTCGTCTTCCTCAAGCTCAAAAGCTTCATCATTACTTTTTCAAGCTCAAATTCAAAGGCTTTGCGACTCCAACTCCTCTTCAAAATGTTGATGCAGCTCTACCTCTCCTCAAAATAGAGATGTCAATGAATTTCTTCCCACATCGTGGAGATGGTCATCGGCGTCTCCAATATGTTACAGCTAAGAGAGTCGTCAGTGTCTCCAATATGTTACAACCAAGAGGGTCGTCGCCGTCTCCAATATGTTGTAGTCGAGAGGGTCGTTGTCTCCAATGTGTTGCAATTGAGGAGGTCGTCATCTCTAAAATGCAGCCGAGGAGATTGTTGTCTCTAAAATGTAGCCAAGGAGGCTGCCGTCTCCAAAATGCAGCCAAGAAGTTCATCGTCTCCAAAATGTAG

mRNA sequence

ATGCTTCCTTATATTCAAGTTAAAGAGTTTCGTCTTCCTCAAGCTCAAAAGCTTCATCATTACTTTTTCAAGCTCAAATTCAAAGGCTTTGCGACTCCAACTCCTCTTCAAAATGTTGATGCAGCTCTACCTCTCCTCAAAATAGAGATGTCAATGAATTTCTTCCCACATCGTGGAGATGGTCATCGGCGTCTCCAATATGTTACAGCTAAGAGAGTCGTCAGTGTCTCCAATATGTTACAACCAAGAGGGTCGTCGCCGTCTCCAATATGTTGTAGTCGAGAGGGTCGTTGTCTCCAATGTGTTGCAATTGAGGAGGTCGTCATCTCTAAAATGCAGCCGAGGAGATTGTTGTCTCTAAAATGTAGCCAAGGAGGCTGCCGTCTCCAAAATGCAGCCAAGAAGTTCATCGTCTCCAAAATGTAG

Coding sequence (CDS)

ATGCTTCCTTATATTCAAGTTAAAGAGTTTCGTCTTCCTCAAGCTCAAAAGCTTCATCATTACTTTTTCAAGCTCAAATTCAAAGGCTTTGCGACTCCAACTCCTCTTCAAAATGTTGATGCAGCTCTACCTCTCCTCAAAATAGAGATGTCAATGAATTTCTTCCCACATCGTGGAGATGGTCATCGGCGTCTCCAATATGTTACAGCTAAGAGAGTCGTCAGTGTCTCCAATATGTTACAACCAAGAGGGTCGTCGCCGTCTCCAATATGTTGTAGTCGAGAGGGTCGTTGTCTCCAATGTGTTGCAATTGAGGAGGTCGTCATCTCTAAAATGCAGCCGAGGAGATTGTTGTCTCTAAAATGTAGCCAAGGAGGCTGCCGTCTCCAAAATGCAGCCAAGAAGTTCATCGTCTCCAAAATGTAG

Protein sequence

MLPYIQVKEFRLPQAQKLHHYFFKLKFKGFATPTPLQNVDAALPLLKIEMSMNFFPHRGDGHRRLQYVTAKRVVSVSNMLQPRGSSPSPICCSREGRCLQCVAIEEVVISKMQPRRLLSLKCSQGGCRLQNAAKKFIVSKM
Homology
BLAST of PI0012111 vs. ExPASy TrEMBL
Match: A0A5A7UWX8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00740 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-10
Identity = 56/130 (43.08%), Postives = 76/130 (58.46%), Query Frame = 0

Query: 16  QKLHHYFFKLKFKGFATPTPLQNVD----------AALPLLKIEMSMNFFPHRGDGHRRL 75
           +KLH  FFK KFK F      Q               L +L++  S++   +  + H RL
Sbjct: 631 KKLHRCFFKFKFKSFKLHRCSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVH-RL 690

Query: 76  QYVTAKRVVSVSNMLQPRGSSPSPICCSREGRCLQCVAIEEVVISKM-QPRRLLS-LKCS 134
           +YV  ++V+ VSNMLQPR SS S ICC++E R L+ VA E+VV+S M QPRR LS + CS
Sbjct: 691 KYVVTEKVI-VSNMLQPRRSS-SQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCS 750

BLAST of PI0012111 vs. ExPASy TrEMBL
Match: A0A5D3C8K3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00620 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-10
Identity = 56/130 (43.08%), Postives = 76/130 (58.46%), Query Frame = 0

Query: 16  QKLHHYFFKLKFKGFATPTPLQNVD----------AALPLLKIEMSMNFFPHRGDGHRRL 75
           +KLH  FFK KFK F      Q               L +L++  S++   +  + H RL
Sbjct: 631 KKLHRCFFKFKFKSFKLHRCSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVH-RL 690

Query: 76  QYVTAKRVVSVSNMLQPRGSSPSPICCSREGRCLQCVAIEEVVISKM-QPRRLLS-LKCS 134
           +YV  ++V+ VSNMLQPR SS S ICC++E R L+ VA E+VV+S M QPRR LS + CS
Sbjct: 691 KYVVTEKVI-VSNMLQPRRSS-SQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCS 750

BLAST of PI0012111 vs. ExPASy TrEMBL
Match: A0A5D3BZN7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00880 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.1e-08
Identity = 50/129 (38.76%), Postives = 67/129 (51.94%), Query Frame = 0

Query: 1   MLPYIQVKEFR-------------LPQAQKLHHYFFKLKFKGF----ATPTPLQNVDAAL 60
           MLP+IQ + F              L   + LH  FFK K   F    AT  PLQN+D A 
Sbjct: 1   MLPHIQARSFHPRFLIFKFEGFVFLELKKDLHRCFFKHKLGRFIDADATLPPLQNIDTA- 60

Query: 61  PLLKIEMSMNFFPHRGDGHRRLQYVTAKRVVSVSNMLQPRGSSPSPICCSREGRCLQCVA 113
                  S      + D H  L+YV  ++++ +SNMLQPR SS S ICC+RE R L+ V 
Sbjct: 61  ----NSASSQICYSQEDCH--LKYVAVEKII-ISNMLQPRRSS-SQICCNREDRHLKYVT 120

BLAST of PI0012111 vs. ExPASy TrEMBL
Match: A0A5A7V172 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold640G00360 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 47/97 (48.45%), Postives = 57/97 (58.76%), Query Frame = 0

Query: 57  HRGDGHRRLQYVTAKRVVS---------VSNMLQPRGSSPSPICCSREGRCLQCVAIEEV 116
           HR D H  L+YV  +R  S         +SNMLQPR SSP  ICC+REG  L+ V +E+V
Sbjct: 788 HREDRH--LKYVAVRRSSSPIGCIKRMIISNMLQPRRSSPQ-ICCNREGHHLKYVVVEKV 847

Query: 117 VISKMQPRRLLS--LKCSQGGCRLQN-AAKKFIVSKM 142
           V+S M  RR LS  + CSQ G RL    A+K  VS M
Sbjct: 848 VVSHMLQRRRLSSQICCSQEGRRLNYVVAEKVFVSNM 881

BLAST of PI0012111 vs. ExPASy TrEMBL
Match: A0A5A7T154 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00780 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 55/142 (38.73%), Postives = 73/142 (51.41%), Query Frame = 0

Query: 16  QKLHHYFFKLKFKGFATPTPLQNVDAALPLLKI---EMSMNFFPHRGDGHRRLQYVTAKR 75
           +KLH  FFK KFKGF      +      PL  +   ++ ++   HR   H  L+YV A++
Sbjct: 492 KKLHRCFFKFKFKGFKLHRCSREDLYLHPLTCVAVEKLVISNILHREGRH--LKYVVAEK 551

Query: 76  VVSVSNMLQPRGSSPSPICCSR----------EGRCLQCVAIEEVVISKM-QPRRLLSLK 135
            V++SNMLQPR SS S ICCS+          E   L+ V  EEV+ S M  PRR  S  
Sbjct: 552 -VAISNMLQPRRSS-SQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQI 611

Query: 136 C--SQGGCRLQNAAKKFIVSKM 142
           C   +G C     A+K +VS M
Sbjct: 612 CCSREGRCLKYVVAEKVVVSNM 629

BLAST of PI0012111 vs. NCBI nr
Match: TYK08171.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 9.2e-10
Identity = 56/130 (43.08%), Postives = 76/130 (58.46%), Query Frame = 0

Query: 16  QKLHHYFFKLKFKGFATPTPLQNVD----------AALPLLKIEMSMNFFPHRGDGHRRL 75
           +KLH  FFK KFK F      Q               L +L++  S++   +  + H RL
Sbjct: 631 KKLHRCFFKFKFKSFKLHRCSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVH-RL 690

Query: 76  QYVTAKRVVSVSNMLQPRGSSPSPICCSREGRCLQCVAIEEVVISKM-QPRRLLS-LKCS 134
           +YV  ++V+ VSNMLQPR SS S ICC++E R L+ VA E+VV+S M QPRR LS + CS
Sbjct: 691 KYVVTEKVI-VSNMLQPRRSS-SQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCS 750

BLAST of PI0012111 vs. NCBI nr
Match: KAA0059640.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 9.2e-10
Identity = 56/130 (43.08%), Postives = 76/130 (58.46%), Query Frame = 0

Query: 16  QKLHHYFFKLKFKGFATPTPLQNVD----------AALPLLKIEMSMNFFPHRGDGHRRL 75
           +KLH  FFK KFK F      Q               L +L++  S++   +  + H RL
Sbjct: 631 KKLHRCFFKFKFKSFKLHRCSQEAHHLKYVAVEKVVILNMLQLRRSISQTCYSREVH-RL 690

Query: 76  QYVTAKRVVSVSNMLQPRGSSPSPICCSREGRCLQCVAIEEVVISKM-QPRRLLS-LKCS 134
           +YV  ++V+ VSNMLQPR SS S ICC++E R L+ VA E+VV+S M QPRR LS + CS
Sbjct: 691 KYVVTEKVI-VSNMLQPRRSS-SQICCNQEIRHLKYVAAEKVVVSNMLQPRRSLSQICCS 750

BLAST of PI0012111 vs. NCBI nr
Match: KAA0031630.1 (hypothetical protein E6C27_scaffold139G003990 [Cucumis melo var. makuwa] >TYK04478.1 hypothetical protein E5676_scaffold409G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-07
Identity = 50/129 (38.76%), Postives = 67/129 (51.94%), Query Frame = 0

Query: 1   MLPYIQVKEFR-------------LPQAQKLHHYFFKLKFKGF----ATPTPLQNVDAAL 60
           MLP+IQ + F              L   + LH  FFK K   F    AT  PLQN+D A 
Sbjct: 1   MLPHIQARSFHPRFLIFKFEGFVFLELKKDLHRCFFKHKLGRFIDADATLPPLQNIDTA- 60

Query: 61  PLLKIEMSMNFFPHRGDGHRRLQYVTAKRVVSVSNMLQPRGSSPSPICCSREGRCLQCVA 113
                  S      + D H  L+YV  ++++ +SNMLQPR SS S ICC+RE R L+ V 
Sbjct: 61  ----NSASSQICYSQEDCH--LKYVAVEKII-ISNMLQPRRSS-SQICCNREDRHLKYVT 120

BLAST of PI0012111 vs. NCBI nr
Match: KAA0059585.1 (uncharacterized protein E6C27_scaffold54G00040 [Cucumis melo var. makuwa] >TYK25791.1 uncharacterized protein E5676_scaffold640G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-07
Identity = 47/97 (48.45%), Postives = 57/97 (58.76%), Query Frame = 0

Query: 57  HRGDGHRRLQYVTAKRVVS---------VSNMLQPRGSSPSPICCSREGRCLQCVAIEEV 116
           HR D H  L+YV  +R  S         +SNMLQPR SSP  ICC+REG  L+ V +E+V
Sbjct: 788 HREDRH--LKYVAVRRSSSPIGCIKRMIISNMLQPRRSSPQ-ICCNREGHHLKYVVVEKV 847

Query: 117 VISKMQPRRLLS--LKCSQGGCRLQN-AAKKFIVSKM 142
           V+S M  RR LS  + CSQ G RL    A+K  VS M
Sbjct: 848 VVSHMLQRRRLSSQICCSQEGRRLNYVVAEKVFVSNM 881

BLAST of PI0012111 vs. NCBI nr
Match: KAA0035946.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30454.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-06
Identity = 55/142 (38.73%), Postives = 73/142 (51.41%), Query Frame = 0

Query: 16  QKLHHYFFKLKFKGFATPTPLQNVDAALPLLKI---EMSMNFFPHRGDGHRRLQYVTAKR 75
           +KLH  FFK KFKGF      +      PL  +   ++ ++   HR   H  L+YV A++
Sbjct: 492 KKLHRCFFKFKFKGFKLHRCSREDLYLHPLTCVAVEKLVISNILHREGRH--LKYVVAEK 551

Query: 76  VVSVSNMLQPRGSSPSPICCSR----------EGRCLQCVAIEEVVISKM-QPRRLLSLK 135
            V++SNMLQPR SS S ICCS+          E   L+ V  EEV+ S M  PRR  S  
Sbjct: 552 -VAISNMLQPRRSS-SQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQI 611

Query: 136 C--SQGGCRLQNAAKKFIVSKM 142
           C   +G C     A+K +VS M
Sbjct: 612 CCSREGRCLKYVVAEKVVVSNM 629

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UWX84.5e-1043.08Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3C8K34.5e-1043.08Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BZN77.1e-0838.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V1721.6e-0748.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T1541.3e-0638.73Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
TYK08171.19.2e-1043.08ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0059640.19.2e-1043.08ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0031630.11.5e-0738.76hypothetical protein E6C27_scaffold139G003990 [Cucumis melo var. makuwa] >TYK044... [more]
KAA0059585.13.3e-0748.45uncharacterized protein E6C27_scaffold54G00040 [Cucumis melo var. makuwa] >TYK25... [more]
KAA0035946.12.8e-0638.73ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30454.1 ty3-gyp... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012111.1PI0012111.1mRNA