PI0012038 (gene) Melon (PI 482460) v1

Overview


Name	PI0012038
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	classical arabinogalactan protein 9-like
Location	chr06: 29030694 .. 29031580 (-)
RNA-Seq Expression	PI0012038
Synteny	PI0012038

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTCCTTCTTCTGCTTCACTTTCTTCCCAGCTATGGCTTCTGCACGTGCCATGCTCGTGCTCGTCCTCTCTCTTCTTTCTCTCTCTTCCTCCTCCATTGCTCAATCTCCCTCCCCTTCTCCAGGTCCCGCCTCCCCCGCCGCACCTCCGCCGTCAACCCCACCGCCGGTAGCACCTCCCCCGACCACACCTCCCCCTGCAGCCTCACCGCCGCCTAGCATATCAACTCCACCGGCAGCAACTCCTCCCGCCACCCCACCGACGATGGCATCTCCGCCGCCAATGGAACAAAGCCCAGCCCCAGGCCCAATGCCCGACAGCCCACCATCGCCTCCAGCCCAAAGTCCAGGTCCAACGTCTCCACCGGCTCCGGCTCCAGCTCCAACGCCGCCGTCACCTCCGCCGCCGAGCGCGGGATTTTCCATCCATCAAGGTGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGCCTGGCCGTCGTATTGGTTTAACACAGCATAGTACTTGAATTTGCTGTAGATTATTATGATTATTATGAGCTTCATACTCATTTGTGTATTCTTTTTTTTTCTTTTTTAATTTCTTCACCATTTCCATCTCTTGAGAGCATCCTTGAGTGAGTGATATTTGTGGGATTTGTTAGCATTTTCATTTTTTTTTTGCTAGTTGAATAAGAGAGACTTGTTTCTTGTTCATGGTTTCATAATAATTTACTCAATTATACATTTTATGCTAATAGACAACAGAAAAAAAAAAAAATCAAACAATCTTGGGTAAGACAAATTATTATTTGAAAAAGTTTATGGATAGGAAGATTTGAACCATAGACATTTTTGTTGTTAACTTATCATAAATGTCAATTGAATTGTTCTGGTTTTGGTTGTC

mRNA sequence

TTCCTCCTTCTTCTGCTTCACTTTCTTCCCAGCTATGGCTTCTGCACGTGCCATGCTCGTGCTCGTCCTCTCTCTTCTTTCTCTCTCTTCCTCCTCCATTGCTCAATCTCCCTCCCCTTCTCCAGGTCCCGCCTCCCCCGCCGCACCTCCGCCGTCAACCCCACCGCCGGTAGCACCTCCCCCGACCACACCTCCCCCTGCAGCCTCACCGCCGCCTAGCATATCAACTCCACCGGCAGCAACTCCTCCCGCCACCCCACCGACGATGGCATCTCCGCCGCCAATGGAACAAAGCCCAGCCCCAGGCCCAATGCCCGACAGCCCACCATCGCCTCCAGCCCAAAGTCCAGGTCCAACGTCTCCACCGGCTCCGGCTCCAGCTCCAACGCCGCCGTCACCTCCGCCGCCGAGCGCGGGATTTTCCATCCATCAAGGTGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGCCTGGCCGTCGTATTGGTTTAACACAGCATAGTACTTGAATTTGCTGTAGATTATTATGATTATTATGAGCTTCATACTCATTTGTGTATTCTTTTTTTTTCTTTTTTAATTTCTTCACCATTTCCATCTCTTGAGAGCATCCTTGAGTGAGTGATATTTGTGGGATTTGTTAGCATTTTCATTTTTTTTTTGCTAGTTGAATAAGAGAGACTTGTTTCTTGTTCATGGTTTCATAATAATTTACTCAATTATACATTTTATGCTAATAGACAACAGAAAAAAAAAAAAATCAAACAATCTTGGGTAAGACAAATTATTATTTGAAAAAGTTTATGGATAGGAAGATTTGAACCATAGACATTTTTGTTGTTAACTTATCATAAATGTCAATTGAATTGTTCTGGTTTTGGTTGTC

Coding sequence (CDS)

ATGGCTTCTGCACGTGCCATGCTCGTGCTCGTCCTCTCTCTTCTTTCTCTCTCTTCCTCCTCCATTGCTCAATCTCCCTCCCCTTCTCCAGGTCCCGCCTCCCCCGCCGCACCTCCGCCGTCAACCCCACCGCCGGTAGCACCTCCCCCGACCACACCTCCCCCTGCAGCCTCACCGCCGCCTAGCATATCAACTCCACCGGCAGCAACTCCTCCCGCCACCCCACCGACGATGGCATCTCCGCCGCCAATGGAACAAAGCCCAGCCCCAGGCCCAATGCCCGACAGCCCACCATCGCCTCCAGCCCAAAGTCCAGGTCCAACGTCTCCACCGGCTCCGGCTCCAGCTCCAACGCCGCCGTCACCTCCGCCGCCGAGCGCGGGATTTTCCATCCATCAAGGTGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGCCTGGCCGTCGTATTGGTTTAA

Protein sequence

MASARAMLVLVLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPPPVAPPPTTPPPAASPPPSISTPPAATPPATPPTMASPPPMEQSPAPGPMPDSPPSPPAQSPGPTSPPAPAPAPTPPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVLV

Homology

[Close]

BLAST of PI0012038 vs. ExPASy TrEMBL
Match: A0A0A0L458 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 6.9e-41
Identity = 133/155 (85.81%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 1   MASARAMLVLVLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPPPVAPPPTTPPPAASPP 60
           MASARAMLVL+LSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPPPVAPPPTTPPPAASPP
Sbjct: 1   MASARAMLVLLLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPPPVAPPPTTPPPAASPP 60

Query: 61  PSISTPPAATPPATPPTMASPPPMEQS--PAPGP-MPDSPPSPPAQSPGPTSPPAPAPAP 120
            SISTPPAA P ATPP MASPPPME S  PAPGP MP+ PPSPP+QSP     PAPAPAP
Sbjct: 61  SSISTPPAAAPTATPPMMASPPPMEPSTAPAPGPAMPEGPPSPPSQSPMSPPGPAPAPAP 120

Query: 121 TPPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVLV 153
           TPPS  P SAGFSIHQGGY A VAAVLGGLAVVLV
Sbjct: 121 TPPSARPRSAGFSIHQGGYMAGVAAVLGGLAVVLV 155

[Close]

BLAST of PI0012038 vs. ExPASy TrEMBL
Match: A0A6J1E5X6 (classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111431090 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.6e-32
Identity = 119/161 (73.91%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MASARAMLVLVLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPPPVAPPPTTPPP----- 60
           MA+ARAMLVL LSLLSL++S+IAQSPSP+PGPA  AAPPP TPPPVA PPTTPPP     
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60

Query: 61  -AASPPPSISTPPAATPPATPPTMASPPPMEQSPAPGP--MPDSPPSPPAQSPGPTSPPA 120
            AASPPPS+STPP A PP  PP MASPP ME  P+PGP  MPDSPPSPP  SPGP   PA
Sbjct: 61  MAASPPPSMSTPPMAAPPTVPPPMASPPSMESGPSPGPSTMPDSPPSPPGPSPGPAPGPA 120

Query: 121 PAPAPTPPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV 153
           PA AP+PP  PPP AGFSI  GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160

[Close]

BLAST of PI0012038 vs. ExPASy TrEMBL
Match: Q4A2U1 (Putative membrane protein OS=Emiliania huxleyi virus 86 (isolate United Kingdom/English Channel/1999) OX=654925 GN=EhV192 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 25   SPSPSPGPASPAAPPPSTPPPVAPPPTTPPPAASPPPS--ISTPPAATPPATPPTMASPP 84
            SP PSP P SP   PP +PPP +PPP +PPP + PPPS   S PP + PP +PP  + PP
Sbjct: 2675 SPPPSPPPPSPPPSPPPSPPPPSPPPPSPPPPSPPPPSPPPSPPPPSPPPPSPPPPSPPP 2734

Query: 85   PMEQSPAPGPMPDSPPSPPAQSPGPTSPPAPAPAPT------PPSPPPPSAGFSIHQGGY 144
            P    P+P P    PPSPP  SP P  PPAP+P P+      PPSPPPPS        G 
Sbjct: 2735 PSPPPPSPPPPSPPPPSPPPPSPPPPLPPAPSPPPSPPPPSPPPSPPPPSPPDRTSTSGT 2794

Query: 145  KAAVAAVLGGLAVVLV 153
            KA + ++ GG++ +++
Sbjct: 2795 KATIGSIAGGMSGIII 2810

[Close]

BLAST of PI0012038 vs. ExPASy TrEMBL
Match: G4YB50 (Uncharacterized protein OS=Emiliania huxleyi virus 88 OX=181217 GN=EOVG_00278 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 25   SPSPSPGPASPAAPPPSTPPPVAPPPTTPPPAASPPPS--ISTPPAATPPATPPTMASPP 84
            SP PSP P SP   PP +PPP +PPP +PPP + PPPS   S PP + PP +PP  + PP
Sbjct: 2668 SPPPSPPPPSPPPSPPPSPPPPSPPPPSPPPPSPPPPSPPPSPPPPSPPPPSPPPPSPPP 2727

Query: 85   PMEQSPAPGPMPDSPPSPPAQSPGPTSPPAPAPAPT------PPSPPPPSAGFSIHQGGY 144
            P    P+P P    PPSPP  SP P  PPAP+P P+      PPSPPPPS        G 
Sbjct: 2728 PSPPPPSPPPPSPPPPSPPPPSPPPPLPPAPSPPPSPPPPSPPPSPPPPSPPDRTSTSGT 2787

Query: 145  KAAVAAVLGGLAVVLV 153
            KA + ++ GG++ +++
Sbjct: 2788 KATIGSIAGGMSGIII 2803

[Close]

BLAST of PI0012038 vs. ExPASy TrEMBL
Match: V5LRN7 (Putative membrane protein OS=Emiliania huxleyi virus 164 OX=1421423 GN=EhV164_00221 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 25   SPSPSPGPASPAAPPPSTPPPVAPPPTTPPPAASPPPS--ISTPPAATPPATPPTMASPP 84
            SP PSP P SP   PP +PPP +PPP +PPP + PPPS   S PP + PP +PP  + PP
Sbjct: 894  SPPPSPPPPSPPPSPPPSPPPPSPPPPSPPPPSPPPPSPPPSPPPPSPPPPSPPPPSPPP 953

Query: 85   PMEQSPAPGPMPDSPPSPPAQSPGPTSPPAPAPAPT------PPSPPPPSAGFSIHQGGY 144
            P    P+P P    PPSPP  SP P  PPAP+P P+      PPSPPPPS        G 
Sbjct: 954  PSPPPPSPPPPSPPPPSPPPPSPPPPLPPAPSPPPSPPPPSPPPSPPPPSPPDRTSTSGT 1013

Query: 145  KAAVAAVLGGLAVVLV 153
            KA + ++ GG++ +++
Sbjct: 1014 KATIGSIAGGMSGIII 1029

[Close]

BLAST of PI0012038 vs. NCBI nr
Match: XP_038903480.1 (classical arabinogalactan protein 9-like [Benincasa hispida])

HSP 1 Score: 184.5 bits (467), Expect = 6.8e-43
Identity = 130/154 (84.42%), Postives = 135/154 (87.66%), Query Frame = 0


Query: 1   MASARAMLVLVLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPPPVAPPPTTPPPAASPP 60
           MASARAMLVL LSLL+L SSSIAQSPSP+PGPAS AAPPPS+PPPVA PPTTPPPAASPP
Sbjct: 1   MASARAMLVLALSLLALFSSSIAQSPSPAPGPASAAAPPPSSPPPVAAPPTTPPPAASPP 60

Query: 61  PSISTPPAATPPATPPTMASPPPMEQSPAPGPMPDSPPSPPAQSPGP--TSPPAPAPAPT 120
           P+ISTPPAA PPA PP MASPP ME SP PGPMPDSPPSPP  SP P   SPP PAPAP+
Sbjct: 61  PTISTPPAAAPPAIPPMMASPPSMESSPGPGPMPDSPPSPPGPSPSPMSMSPPTPAPAPS 120

Query: 121 PPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVLV 153
           PPSPPPPSAGFSIHQGGYKAA AAVLGGLAV LV
Sbjct: 121 PPSPPPPSAGFSIHQGGYKAAAAAVLGGLAVFLV 154

[Close]

BLAST of PI0012038 vs. NCBI nr
Match: XP_022923372.1 (classical arabinogalactan protein 9-like [Cucurbita moschata])

HSP 1 Score: 148.3 bits (373), Expect = 5.4e-32
Identity = 119/161 (73.91%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MASARAMLVLVLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPPPVAPPPTTPPP----- 60
           MA+ARAMLVL LSLLSL++S+IAQSPSP+PGPA  AAPPP TPPPVA PPTTPPP     
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60

Query: 61  -AASPPPSISTPPAATPPATPPTMASPPPMEQSPAPGP--MPDSPPSPPAQSPGPTSPPA 120
            AASPPPS+STPP A PP  PP MASPP ME  P+PGP  MPDSPPSPP  SPGP   PA
Sbjct: 61  MAASPPPSMSTPPMAAPPTVPPPMASPPSMESGPSPGPSTMPDSPPSPPGPSPGPAPGPA 120

Query: 121 PAPAPTPPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV 153
           PA AP+PP  PPP AGFSI  GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160

[Close]

BLAST of PI0012038 vs. NCBI nr
Match: XP_023553563.1 (classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.4 bits (368), Expect = 2.1e-31
Identity = 120/162 (74.07%), Postives = 131/162 (80.86%), Query Frame = 0


Query: 1   MASARAMLVLVLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPPPVAPPPTTPPP----- 60
           MA+ARAMLVL LSLLSL++S+IAQSPSP+PGPA  AAPPP TPPPVA PPTTPPP     
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60

Query: 61  -AASPPPSISTPPAATPPATPPTMASPPPMEQSPAPGP--MPDSPPSPPAQSPGPTSPPA 120
            AASPPPS+STPP A PP   P MASPP ME  P+PGP  MPDSPPSPP  SPGP+S P+
Sbjct: 61  MAASPPPSMSTPPMAAPPTVLPPMASPPSMESGPSPGPTTMPDSPPSPPGPSPGPSSEPS 120

Query: 121 PAPAPT-PPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV 153
           PA AP+ PPSPPPP AGFSI  GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 161

[Close]

BLAST of PI0012038 vs. NCBI nr
Match: KAG6596882.1 (hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.5 bits (184), Expect = 4.5e-10
Identity = 86/151 (56.95%), Postives = 94/151 (62.25%), Query Frame = 0


Query: 1   MASARAMLVLVLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPPPVAPPPTTPPPAASPP 60
           MA+ARAMLVL L   +LSSS+IAQ PS    PA+ AAP PSTP PVA P  + PPAASPP
Sbjct: 1   MATARAMLVLALYFFALSSSAIAQGPS----PAAAAAPRPSTPSPVASPAMS-PPAASPP 60

Query: 61  PSISTPPAATPPATPPTMASPPPMEQSPAPGPMPDSPPSPPAQSPGPTSPPAPAPAPTPP 120
             IS+PP A         ASPP M  SP   PMPDSPPS P  SPGP S           
Sbjct: 61  LIISSPPMA---------ASPPSMGMSPVSVPMPDSPPSLP--SPGPGS----------- 119

Query: 121 SPPPPSAGFSIHQGGYKAAVAAVLGGLAVVL 152
                SAGFSIH GGYKA +AAVLGG+A VL
Sbjct: 121 -----SAGFSIHHGGYKAGLAAVLGGMAEVL 119

[Close]

BLAST of PI0012038 vs. NCBI nr
Match: YP_293946.1 (hypothetical protein EhV192 [Emiliania huxleyi virus 86] >CAI65615.1 putative membrane protein [Emiliania huxleyi virus 86])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-05
Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 25   SPSPSPGPASPAAPPPSTPPPVAPPPTTPPPAASPPPS--ISTPPAATPPATPPTMASPP 84
            SP PSP P SP   PP +PPP +PPP +PPP + PPPS   S PP + PP +PP  + PP
Sbjct: 2675 SPPPSPPPPSPPPSPPPSPPPPSPPPPSPPPPSPPPPSPPPSPPPPSPPPPSPPPPSPPP 2734

Query: 85   PMEQSPAPGPMPDSPPSPPAQSPGPTSPPAPAPAPT------PPSPPPPSAGFSIHQGGY 144
            P    P+P P    PPSPP  SP P  PPAP+P P+      PPSPPPPS        G 
Sbjct: 2735 PSPPPPSPPPPSPPPPSPPPPSPPPPLPPAPSPPPSPPPPSPPPSPPPPSPPDRTSTSGT 2794

Query: 145  KAAVAAVLGGLAVVLV 153
            KA + ++ GG++ +++
Sbjct: 2795 KATIGSIAGGMSGIII 2810

The following BLAST results are available for this feature:

BLAST of PI0012038 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012038 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L458	6.9e-41	85.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1	[more]
A0A6J1E5X6	2.6e-32	73.91	classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
Q4A2U1	1.6e-05	46.32	Putative membrane protein OS=Emiliania huxleyi virus 86 (isolate United Kingdom/...	[more]
G4YB50	1.6e-05	46.32	Uncharacterized protein OS=Emiliania huxleyi virus 88 OX=181217 GN=EOVG_00278 PE...	[more]
V5LRN7	1.6e-05	46.32	Putative membrane protein OS=Emiliania huxleyi virus 164 OX=1421423 GN=EhV164_00...	[more]

BLAST of PI0012038 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903480.1	6.8e-43	84.42	classical arabinogalactan protein 9-like [Benincasa hispida]	[more]
XP_022923372.1	5.4e-32	73.91	classical arabinogalactan protein 9-like [Cucurbita moschata]	[more]
XP_023553563.1	2.1e-31	74.07	classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]	[more]
KAG6596882.1	4.5e-10	56.95	hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sorori...	[more]
YP_293946.1	3.3e-05	46.32	hypothetical protein EhV192 [Emiliania huxleyi virus 86] >CAI65615.1 putative me...	[more]

BLAST of PI0012038 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012038.1	PI0012038.1	mRNA