PI0011973 (gene) Melon (PI 482460) v1

Overview


Name	PI0011973
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Transposon Ty3-G Gag-Pol polyprotein
Location	chr01: 8351656 .. 8352036 (+)
RNA-Seq Expression	PI0011973
Synteny	PI0011973

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTCAATGATAAGGAAATCAAGTTCAACGTCTTTGACGCGTTGAAATTCCCTGAGGATGCTGAAAGCTACAACGTAAATGAATCCATTGGGTGGGATTGTTGCGAGGAAGATGTGATCGTCGAGCTGTTTGGTCTTGAAGAATTCAATTTTGAGTTTTCCGAAAGTGTCCTGAAAGAGGTGAATGTCGTGTTTGACATGAGGAAGTTTGAACCTTTGGATATGCAAACCAAAGGAGAAAAGAAAATAAAGCCATCAAAAGAGCAGCCACCAGAGATAAAGCTCAAGTCGTTGTCCAACCACCTGAAATATGCATACTTTGGGGAGAATGACACCTTGCCCATCATCATCTCCGCCCACTTGAATGCTGATTCGTAG

mRNA sequence

ATGCAAGTCAATGATAAGGAAATCAAGTTCAACGTCTTTGACGCGTTGAAATTCCCTGAGGATGCTGAAAGCTACAACGTAAATGAATCCATTGGGTGGGATTGTTGCGAGGAAGATGTGATCGTCGAGCTGTTTGGTCTTGAAGAATTCAATTTTGAGTTTTCCGAAAGTGTCCTGAAAGAGGTGAATGTCGTGTTTGACATGAGGAAGTTTGAACCTTTGGATATGCAAACCAAAGGAGAAAAGAAAATAAAGCCATCAAAAGAGCAGCCACCAGAGATAAAGCTCAAGTCGTTGTCCAACCACCTGAAATATGCATACTTTGGGGAGAATGACACCTTGCCCATCATCATCTCCGCCCACTTGAATGCTGATTCGTAG

Coding sequence (CDS)

ATGCAAGTCAATGATAAGGAAATCAAGTTCAACGTCTTTGACGCGTTGAAATTCCCTGAGGATGCTGAAAGCTACAACGTAAATGAATCCATTGGGTGGGATTGTTGCGAGGAAGATGTGATCGTCGAGCTGTTTGGTCTTGAAGAATTCAATTTTGAGTTTTCCGAAAGTGTCCTGAAAGAGGTGAATGTCGTGTTTGACATGAGGAAGTTTGAACCTTTGGATATGCAAACCAAAGGAGAAAAGAAAATAAAGCCATCAAAAGAGCAGCCACCAGAGATAAAGCTCAAGTCGTTGTCCAACCACCTGAAATATGCATACTTTGGGGAGAATGACACCTTGCCCATCATCATCTCCGCCCACTTGAATGCTGATTCGTAG

Protein sequence

MQVNDKEIKFNVFDALKFPEDAESYNVNESIGWDCCEEDVIVELFGLEEFNFEFSESVLKEVNVVFDMRKFEPLDMQTKGEKKIKPSKEQPPEIKLKSLSNHLKYAYFGENDTLPIIISAHLNADS

Homology

[Close]

BLAST of PI0011973 vs. ExPASy TrEMBL
Match: A0A5A7UE99 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00340 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 8.0e-27
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 1   MQVNDKEIKFNVFDALKFPEDAESYNVNESIGWDCCEEDVIVELFGLEEFNFEFSES-VL 60
           M  ND+EIKFN + ++KFP +   YN  ES+GWD C+E+   ELF  EEF  E   S +L
Sbjct: 76  MCFNDEEIKFNCYQSMKFPANDVKYNAIESLGWDYCKEEPYHELFSTEEFFEEEDPSYIL 135

Query: 61  KEVNVVFDMRKFEPLDMQTKGEKKIKPSKEQPPEIKLKSLSNHLKYAYFGENDTLPI 117
           +EVNV+    KFE LD++TKG+KKIK S E+PPEI+LK L NHLKYAY GENDTL I
Sbjct: 136 EEVNVMLGKTKFESLDLKTKGKKKIKSSIEEPPEIELKPLPNHLKYAYLGENDTLYI 192

[Close]

BLAST of PI0011973 vs. ExPASy TrEMBL
Match: A0A5A7V9Q0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001970 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 62/98 (63.27%), Postives = 78/98 (79.59%), Query Frame = 0


Query: 29  ESIGWDCCEEDVIVELFGLEE-FNFEFSESVLKEVNVVFDMRKFEPLDMQTKGEKKIKPS 88
           ES+GWD C+E+V VELF  EE F  E S+ +L+EVNVV+  RKFEPLD+QTKG+KKIKP 
Sbjct: 10  ESLGWDYCKEEVFVELFSPEEFFEEEDSDYILEEVNVVYGARKFEPLDLQTKGKKKIKPL 69

Query: 89  KEQPPEIKLKSLSNHLKYAYFGENDTLPIIISAHLNAD 126
            ++P E++LKSL NHLKYAY GEN+T  +IISA LN +
Sbjct: 70  IKKPRELELKSLPNHLKYAYLGENETRLVIISAQLNVE 107

[Close]

BLAST of PI0011973 vs. ExPASy TrEMBL
Match: A0A5A7UF79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00260 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 63/107 (58.88%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 18  FPEDAESYNVNESIGWDCCEEDVIVELFGLEEFNFEFSES-VLKEVNVVFDMRKFEPLDM 77
           FP D E+ NV E +GW+  E++   ELF  EEF  E   S +LKEVNVV   +KFE LD+
Sbjct: 150 FPTDDENCNVIEFLGWNYFEKEAYQELFSTEEFFEEDDPSYILKEVNVVSSEKKFESLDL 209

Query: 78  QTKGEKKIKPSKEQPPEIKLKSLSNHLKYAYFGENDTLPIIISAHLN 124
           Q KGEKK KPS E+PPE++LKSL NHLKY Y  ENDTLP+ IS HL+
Sbjct: 210 QIKGEKKTKPSIEEPPELELKSLPNHLKYVYLRENDTLPVSISTHLD 256

[Close]

BLAST of PI0011973 vs. ExPASy TrEMBL
Match: A0A5D3BCZ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00470 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.4e-23
Identity = 62/125 (49.60%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 1   MQVNDKEIKFNVFDALKFPEDAESYNVNESIGWDCCEEDVIVELFGLEEFNFEFSESVLK 60
           M  NDKEIKFNV + +KF  DAE+Y+   ++      +   +    L+    + +E +L 
Sbjct: 191 MHFNDKEIKFNVVNTMKFSADAENYSA-IALDGTIVRKKPTISCLELKNSLRKMNEIILD 250

Query: 61  EVNVVFDMRKFEPLDMQTKGEKKIKPSKEQPPEIKLKSLSNHLKYAYFGENDTLPIIISA 120
           E+N +FD  KFEPLD+QTKGEKK K S  +PPE++LK L NHLK  Y GENDTLP+IIS 
Sbjct: 251 ELNAMFDELKFEPLDLQTKGEKKTKSSIGEPPELELKLLPNHLKCVYLGENDTLPVIIST 310

Query: 121 HLNAD 126
           HL  D
Sbjct: 311 HLEGD 314

[Close]

BLAST of PI0011973 vs. ExPASy TrEMBL
Match: A0A5D3C0Z2 (Integrase_H2C2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00690 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.6e-22
Identity = 60/107 (56.07%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 18  FPEDAESYNVNESIGWDCCEEDVIVELFGLEEFNFEFSE-SVLKEVNVVFDMRKFEPLDM 77
           FP D ES N  E +GWD CEE+   ELF  +EF  E     +LKEVN V    KFE LD+
Sbjct: 110 FPIDVESCNAIECLGWDYCEEEAYYELFSTKEFLEEDKPYYILKEVNTVSGKNKFESLDL 169

Query: 78  QTKGEKKIKPSKEQPPEIKLKSLSNHLKYAYFGENDTLPIIISAHLN 124
           QTKGE K + S E+PP+++LK L NHLKYAY  ENDTLP+ I AHL+
Sbjct: 170 QTKGENKTQASIEEPPKLELKPLPNHLKYAYLRENDTLPVSIPAHLD 216

[Close]

BLAST of PI0011973 vs. NCBI nr
Match: KAA0054122.1 (uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.7e-26
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 1   MQVNDKEIKFNVFDALKFPEDAESYNVNESIGWDCCEEDVIVELFGLEEFNFEFSES-VL 60
           M  ND+EIKFN + ++KFP +   YN  ES+GWD C+E+   ELF  EEF  E   S +L
Sbjct: 76  MCFNDEEIKFNCYQSMKFPANDVKYNAIESLGWDYCKEEPYHELFSTEEFFEEEDPSYIL 135

Query: 61  KEVNVVFDMRKFEPLDMQTKGEKKIKPSKEQPPEIKLKSLSNHLKYAYFGENDTLPI 117
           +EVNV+    KFE LD++TKG+KKIK S E+PPEI+LK L NHLKYAY GENDTL I
Sbjct: 136 EEVNVMLGKTKFESLDLKTKGKKKIKSSIEEPPEIELKPLPNHLKYAYLGENDTLYI 192

[Close]

BLAST of PI0011973 vs. NCBI nr
Match: KAA0062401.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK26580.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 4.5e-24
Identity = 62/98 (63.27%), Postives = 78/98 (79.59%), Query Frame = 0


Query: 29  ESIGWDCCEEDVIVELFGLEE-FNFEFSESVLKEVNVVFDMRKFEPLDMQTKGEKKIKPS 88
           ES+GWD C+E+V VELF  EE F  E S+ +L+EVNVV+  RKFEPLD+QTKG+KKIKP 
Sbjct: 10  ESLGWDYCKEEVFVELFSPEEFFEEEDSDYILEEVNVVYGARKFEPLDLQTKGKKKIKPL 69

Query: 89  KEQPPEIKLKSLSNHLKYAYFGENDTLPIIISAHLNAD 126
            ++P E++LKSL NHLKYAY GEN+T  +IISA LN +
Sbjct: 70  IKKPRELELKSLPNHLKYAYLGENETRLVIISAQLNVE 107

[Close]

BLAST of PI0011973 vs. NCBI nr
Match: KAA0052866.1 (uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04359.1 uncharacterized protein E5676_scaffold675G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 3.8e-23
Identity = 63/107 (58.88%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 18  FPEDAESYNVNESIGWDCCEEDVIVELFGLEEFNFEFSES-VLKEVNVVFDMRKFEPLDM 77
           FP D E+ NV E +GW+  E++   ELF  EEF  E   S +LKEVNVV   +KFE LD+
Sbjct: 150 FPTDDENCNVIEFLGWNYFEKEAYQELFSTEEFFEEDDPSYILKEVNVVSSEKKFESLDL 209

Query: 78  QTKGEKKIKPSKEQPPEIKLKSLSNHLKYAYFGENDTLPIIISAHLN 124
           Q KGEKK KPS E+PPE++LKSL NHLKY Y  ENDTLP+ IS HL+
Sbjct: 210 QIKGEKKTKPSIEEPPELELKSLPNHLKYVYLRENDTLPVSISTHLD 256

[Close]

BLAST of PI0011973 vs. NCBI nr
Match: TYJ96997.1 (hypothetical protein E5676_scaffold506G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-22
Identity = 62/125 (49.60%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 1   MQVNDKEIKFNVFDALKFPEDAESYNVNESIGWDCCEEDVIVELFGLEEFNFEFSESVLK 60
           M  NDKEIKFNV + +KF  DAE+Y+   ++      +   +    L+    + +E +L 
Sbjct: 191 MHFNDKEIKFNVVNTMKFSADAENYSA-IALDGTIVRKKPTISCLELKNSLRKMNEIILD 250

Query: 61  EVNVVFDMRKFEPLDMQTKGEKKIKPSKEQPPEIKLKSLSNHLKYAYFGENDTLPIIISA 120
           E+N +FD  KFEPLD+QTKGEKK K S  +PPE++LK L NHLK  Y GENDTLP+IIS 
Sbjct: 251 ELNAMFDELKFEPLDLQTKGEKKTKSSIGEPPELELKLLPNHLKCVYLGENDTLPVIIST 310

Query: 121 HLNAD 126
           HL  D
Sbjct: 311 HLEGD 314

[Close]

BLAST of PI0011973 vs. NCBI nr
Match: KAA0040570.1 (uncharacterized protein E6C27_scaffold262G001400 [Cucumis melo var. makuwa] >TYK05613.1 uncharacterized protein E5676_scaffold98G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 9.4e-22
Identity = 60/107 (56.07%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 18  FPEDAESYNVNESIGWDCCEEDVIVELFGLEEFNFEFSE-SVLKEVNVVFDMRKFEPLDM 77
           FP D ES N  E +GWD CEE+   ELF  +EF  E     +LKEVN V    KFE LD+
Sbjct: 110 FPIDVESCNAIECLGWDYCEEEAYYELFSTKEFLEEDKPYYILKEVNTVSGKNKFESLDL 169

Query: 78  QTKGEKKIKPSKEQPPEIKLKSLSNHLKYAYFGENDTLPIIISAHLN 124
           QTKGE K + S E+PP+++LK L NHLKYAY  ENDTLP+ I AHL+
Sbjct: 170 QTKGENKTQASIEEPPKLELKPLPNHLKYAYLRENDTLPVSIPAHLD 216

The following BLAST results are available for this feature:

BLAST of PI0011973 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011973 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UE99	8.0e-27	58.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V9Q0	2.2e-24	63.27	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31...	[more]
A0A5A7UF79	1.8e-23	58.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BCZ6	5.4e-23	49.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C0Z2	4.6e-22	56.07	Integrase_H2C2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of PI0011973 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054122.1	1.7e-26	58.12	uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa]	[more]
KAA0062401.1	4.5e-24	63.27	reverse transcriptase [Cucumis melo var. makuwa] >TYK26580.1 reverse transcripta...	[more]
KAA0052866.1	3.8e-23	58.88	uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04...	[more]
TYJ96997.1	1.1e-22	49.60	hypothetical protein E5676_scaffold506G00470 [Cucumis melo var. makuwa]	[more]
KAA0040570.1	9.4e-22	56.07	uncharacterized protein E6C27_scaffold262G001400 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of PI0011973 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559:SF373	REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED	coord: 47..123
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 47..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011973.1	PI0011973.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity